mRNA_P-littoralis_Contig1326.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1326.2.1
Unique NamemRNA_P-littoralis_Contig1326.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1326.2.1 vs. uniprot
Match: Q8QN78_ESV1K (EsV-1-212 n=2 Tax=root TaxID=1 RepID=Q8QN78_ESV1K)

HSP 1 Score: 119 bits (297), Expect = 2.700e-33
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 PNKNKHSEEHKAKIAARKKNSRSSSKTPDTFSGCIVPQLREDLKGKVSYIRINGKGPVTPVADMETLDRMVRLLRTEGATELFQQN 258
            P K K SEEHKAKIAARK   RSS KTPD ++GCI  QLR DLKGKVSYIRING+GP+ PVADMETL+RM RLL+TE   +LFQQN
Sbjct:    2 PAKKKRSEEHKAKIAARKL--RSSPKTPDIWNGCIASQLRNDLKGKVSYIRINGEGPIEPVADMETLERMARLLQTEDGRKLFQQN 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1326.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN78_ESV1K2.700e-3373.26EsV-1-212 n=2 Tax=root TaxID=1 RepID=Q8QN78_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1326contigP-littoralis_Contig1326:19612..19872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-212
Ec32 orthologEc-06_004880.1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.4156713-CDS-P-littoralis_Contig1326:19611..198721680789607.4156713-CDS-P-littoralis_Contig1326:19611..19872Pylaiella littoralis U1_48CDSP-littoralis_Contig1326 19612..19872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1326.2.1prot_P-littoralis_Contig1326.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1326 19612..19872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1326.2.1

>prot_P-littoralis_Contig1326.2.1 ID=prot_P-littoralis_Contig1326.2.1|Name=mRNA_P-littoralis_Contig1326.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
PNKNKHSEEHKAKIAARKKNSRSSSKTPDTFSGCIVPQLREDLKGKVSYI
RINGKGPVTPVADMETLDRMVRLLRTEGATELFQQN*
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mRNA from alignment at P-littoralis_Contig1326:19612..19872-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1326.2.1 ID=mRNA_P-littoralis_Contig1326.2.1|Name=mRNA_P-littoralis_Contig1326.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1326:19612..19872- (Pylaiella littoralis U1_48)
CCTAACAAGAACAAACACTCCGAGGAGCACAAGGCGAAGATCGCTGCAAG
GAAAAAGAACAGCCGAAGTTCCTCCAAAACGCCTGACACCTTTTCAGGAT
GCATCGTACCGCAGTTACGCGAAGACCTCAAGGGCAAGGTCTCCTACATA
AGAATCAATGGAAAAGGGCCCGTGACGCCGGTAGCGGACATGGAAACTCT
CGATCGCATGGTCCGTCTCCTACGGACAGAGGGTGCTACGGAGTTGTTTC
AACAAAACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1326:19612..19872-

>mRNA_P-littoralis_Contig1326.2.1 ID=mRNA_P-littoralis_Contig1326.2.1|Name=mRNA_P-littoralis_Contig1326.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1326:19612..19872- (Pylaiella littoralis U1_48)
CCTAACAAGAACAAACACTCCGAGGAGCACAAGGCGAAGATCGCTGCAAG
GAAAAAGAACAGCCGAAGTTCCTCCAAAACGCCTGACACCTTTTCAGGAT
GCATCGTACCGCAGTTACGCGAAGACCTCAAGGGCAAGGTCTCCTACATA
AGAATCAATGGAAAAGGGCCCGTGACGCCGGTAGCGGACATGGAAACTCT
CGATCGCATGGTCCGTCTCCTACGGACAGAGGGTGCTACGGAGTTGTTTC
AACAAAACTGA
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