mRNA_P-littoralis_Contig1323.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1323.6.1
Unique NamemRNA_P-littoralis_Contig1323.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1323.6.1 vs. uniprot
Match: A0A6H5JI83_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI83_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.160e-24
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:  242 MVKTGVSLLAFVAAAAGPAMVVGFALSPSAMTSGARRRATGSSTRLSMMAAAEGKQRVLVIGGTRFSGLYLTKELHSRGHE 484
            M K GVS+L F+AAA GPAMV GFALSP+AM++GAR     SS R   MAAAEGKQRVLVIGGTRFSGLYLTKELHSRGHE
Sbjct:    2 MAKAGVSMLTFIAAAVGPAMVAGFALSPNAMSTGAR---PSSSLR---MAAAEGKQRVLVIGGTRFSGLYLTKELHSRGHE 76
[Close]
BLAST of mRNA_P-littoralis_Contig1323.6.1 vs. uniprot
Match: A0A835Z1X3_9STRA (38 kDa ribosome-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.880e-6
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  401 GKQRVLVIGGTRFSGLYLTKELHSRGHE 484
            G QRVLVIGGTRFSGLYL KELHSRGHE
Sbjct:    4 GPQRVLVIGGTRFSGLYLQKELHSRGHE 31
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1323.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI83_9PHAE2.160e-2476.54NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835Z1X3_9STRA4.880e-692.8638 kDa ribosome-associated protein n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1323contigP-littoralis_Contig1323:18871..19354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDG3
PFAMsEpimerase
Model size485
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
GOsGO:0000427,GO:0000428,GO:0001101,GO:0001871,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005840,GO:0005911,GO:0005975,GO:0005996,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0009991,GO:0010035,GO:0010287,GO:0010297,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030054,GO:0030246,GO:0030247,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031668,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042579,GO:0042631,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0104004,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue9.66e-26
EggNOG OGs2CMCJ@1|root,2QPZ0@2759|Eukaryota
Ec32 ortholog description38 kDa ribosome-associated protein precursor
Ec32 orthologEc-15_000730.1
DescriptionNAD dependent epimerase/dehydratase family
Cds size243
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789606.997357-CDS-P-littoralis_Contig1323:18870..191131680789606.997357-CDS-P-littoralis_Contig1323:18870..19113Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 18871..19113 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.0086384-UTR-P-littoralis_Contig1323:19113..193541680789607.0086384-UTR-P-littoralis_Contig1323:19113..19354Pylaiella littoralis U1_48UTRP-littoralis_Contig1323 19114..19354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1323.6.1prot_P-littoralis_Contig1323.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1323 18871..19113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1323.6.1

>prot_P-littoralis_Contig1323.6.1 ID=prot_P-littoralis_Contig1323.6.1|Name=mRNA_P-littoralis_Contig1323.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MVKTGVSLLAFVAAAAGPAMVVGFALSPSAMTSGARRRATGSSTRLSMMA
AAEGKQRVLVIGGTRFSGLYLTKELHSRGHE
back to top

mRNA from alignment at P-littoralis_Contig1323:18871..19354-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1323.6.1 ID=mRNA_P-littoralis_Contig1323.6.1|Name=mRNA_P-littoralis_Contig1323.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=484bp|location=Sequence derived from alignment at P-littoralis_Contig1323:18871..19354- (Pylaiella littoralis U1_48)
GCCGGATCTGCGACGACATGACGATGGATCCGTTATAGATTGGATCCTCG
ATCCTCGGGTTTCGACCCCACCCCCCTTCCGACGAACAATATTTGCATTG
TACGGGGGAGAGGGGGGGGTGGAGACAAATCTCGCCGCCCACCTCGGTCC
GGCTCCCGGCTCGGCTGGCTAGATTTCCTGGACGTATCTGGGTCTCTCTC
CCTTGTCCATCTCTCCGTGGCACACACGTTGAACACTAAACATGGTGAAA
ACAGGGGTATCTCTGCTGGCCTTCGTTGCGGCCGCCGCCGGGCCTGCCAT
GGTGGTCGGCTTTGCGCTGTCGCCAAGCGCCATGACCTCCGGTGCTCGCA
GGCGAGCAACGGGGTCATCAACGAGGCTCAGCATGATGGCGGCGGCAGAG
GGCAAGCAGCGGGTGCTGGTGATCGGAGGCACTCGTTTCAGCGGGCTGTA
CCTCACCAAGGAGCTTCACTCCAGGGGGCACGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1323:18871..19354-

>mRNA_P-littoralis_Contig1323.6.1 ID=mRNA_P-littoralis_Contig1323.6.1|Name=mRNA_P-littoralis_Contig1323.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig1323:18871..19354- (Pylaiella littoralis U1_48)
ATGGTGAAAACAGGGGTATCTCTGCTGGCCTTCGTTGCGGCCGCCGCCGG
GCCTGCCATGGTGGTCGGCTTTGCGCTGTCGCCAAGCGCCATGACCTCCG
GTGCTCGCAGGCGAGCAACGGGGTCATCAACGAGGCTCAGCATGATGGCG
GCGGCAGAGGGCAAGCAGCGGGTGCTGGTGATCGGAGGCACTCGTTTCAG
CGGGCTGTACCTCACCAAGGAGCTTCACTCCAGGGGGCACGAG
back to top