mRNA_P-littoralis_Contig1323.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1323.7.1
Unique NamemRNA_P-littoralis_Contig1323.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1323.7.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.050e-7
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGTYAEAVPLNKRATEIWMKVLGPEHPTAATALNNRAMLLGKQ 129
            QG YAEA PL  RATEIW + LGPEHP  ATALNNRA LL +Q
Sbjct:  657 QGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699
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BLAST of mRNA_P-littoralis_Contig1323.7.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.330e-6
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 QGTYAEAVPLNKRATEIWMKVLGPEHPTAATA 96
            QG YAEAVPLN+RATEIW+K LGPEHP  ATA
Sbjct: 1064 QGNYAEAVPLNERATEIWIKALGPEHPQVATA 1095
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1323.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU94_9PHAE1.050e-772.09NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE3.330e-681.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1323contigP-littoralis_Contig1323:23192..26389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6W2
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size1011
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons10
Evalue9.33e-05
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size1011
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1323.7.1prot_P-littoralis_Contig1323.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1323 23192..26389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789606.8093421-CDS-P-littoralis_Contig1323:23191..232301680789606.8093421-CDS-P-littoralis_Contig1323:23191..23230Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 23192..23230 -
1680789606.8222013-CDS-P-littoralis_Contig1323:23764..238901680789606.8222013-CDS-P-littoralis_Contig1323:23764..23890Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 23765..23890 -
1680789606.8337295-CDS-P-littoralis_Contig1323:23975..240741680789606.8337295-CDS-P-littoralis_Contig1323:23975..24074Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 23976..24074 -
1680789606.8459485-CDS-P-littoralis_Contig1323:24584..247191680789606.8459485-CDS-P-littoralis_Contig1323:24584..24719Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 24585..24719 -
1680789606.8567104-CDS-P-littoralis_Contig1323:25017..251431680789606.8567104-CDS-P-littoralis_Contig1323:25017..25143Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 25018..25143 -
1680789606.8657439-CDS-P-littoralis_Contig1323:25168..251841680789606.8657439-CDS-P-littoralis_Contig1323:25168..25184Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 25169..25184 -
1680789606.8767972-CDS-P-littoralis_Contig1323:25223..253331680789606.8767972-CDS-P-littoralis_Contig1323:25223..25333Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 25224..25333 -
1680789606.8855958-CDS-P-littoralis_Contig1323:25426..255011680789606.8855958-CDS-P-littoralis_Contig1323:25426..25501Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 25427..25501 -
1680789606.894777-CDS-P-littoralis_Contig1323:25599..257551680789606.894777-CDS-P-littoralis_Contig1323:25599..25755Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 25600..25755 -
1680789606.9035912-CDS-P-littoralis_Contig1323:26260..263891680789606.9035912-CDS-P-littoralis_Contig1323:26260..26389Pylaiella littoralis U1_48CDSP-littoralis_Contig1323 26261..26389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1323.7.1

>prot_P-littoralis_Contig1323.7.1 ID=prot_P-littoralis_Contig1323.7.1|Name=mRNA_P-littoralis_Contig1323.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=337bp
QGTYAEAVPLNKRATEIWMKVLGPEHPTAATALNNRAMLLGKQGKYEEAE
PLYKRSLAIDEKVYGPDHPAVATDLNNWAGLLKNQVRAIFFLKNFSQAIR
EKVLGPEHPDVAASLNNRGVGKYSEADPLYKRAAAMNEAVFGPERPRVAT
DLNNRADLDHTPGKYDQADPVYSRAINIWEAALGPEHPQVATGLDNRAQL
LESQGKYDDAELLYVRAIAIREKALGPEHPALALSLNNRANLLQIQVRTY
AEAEPLYKRSLAIHEKVYGPDHPKVATDLNDWGKYAEAKPLYKRSLAINE
EVLGPEHPHVASLLNNLAGLLKSQGKYAEAEPLYERS
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mRNA from alignment at P-littoralis_Contig1323:23192..26389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1323.7.1 ID=mRNA_P-littoralis_Contig1323.7.1|Name=mRNA_P-littoralis_Contig1323.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3198bp|location=Sequence derived from alignment at P-littoralis_Contig1323:23192..26389- (Pylaiella littoralis U1_48)
CAGGGCACCTATGCCGAAGCTGTGCCCCTGAACAAACGGGCCACGGAGAT
TTGGATGAAAGTCTTAGGTCCTGAGCACCCGACAGCGGCAACAGCGCTCA
ACAACCGGGCGATGTTGTTGGGGAAGCAGGTGAGAGCCGTCGGAAAATCC
CAGGAATTTTCTAGTGGTGGGATGTGACTGTAGTGTTGTTGAACGTGCAG
GTGAGGGCCATCAGAGTTTTCTGGGAAAAATCTTGTGAACAGAGAGAGGC
GGACGTAAATTTCGAAGAATATTCTTGTGGTGGGTATGTCTTGCTCAACA
ACCGGGCGGGGTTGTTGGAGAGCCAGGTAAGAGCCGTCAGAAATTTCCAG
GTTTTTTCGTGGGGTCCAAATTTGTCGGTGAATCGTTTTTGTTCTTGGTG
GGCCACTGCCTCACATCAACCCACTACTTTCGCGGGGCAAGTACGACGAA
GCCGGGCCGTTGTTTGAACGTTCCCTTGCCATCTACGAAAAGTATACGGG
CCTGATCATCCTGCGGTGGCAACAGCGCTCGACAACCGGTCGGTAGTTGT
TGAGCATTTGTTCCCCCGCTGTTCTCGAGTATATATATACCCAGTTCAAC
AAATTCCTCCCTCGTCGTTTTTGGCACCCTCCAGGGGAAGTATGAAGAGG
CAGAGCCACTTTACAAGCGCTCGCTAGCTATTGATGAGAAAGTTTACGGC
CCCGACCACCCGGCGGTGGCTACAGACCTCAACAACTGGGCGGGGTTGTT
GAAGAATCAGGTGAGAGCCATTTTTTTTCTTAAAAATTTCGTAGGGCTCA
CAACGGTTGTTGTTGAAATGAATTTGGTTTTTGTGTACCACTACCTCACA
CGAAGCCACTGCTTGTGCACAGGGCCGAGCCATCGTAGTCACAAGCCATA
CGAGAGAAGGTGCTGGGTCCGGAGCATCCTGATGTGGCCGCATCGCTCAA
CAACCGGGGCGTGGTTGTTGAGAATGTCCCTCCGCAGTTCTAGATCAGAC
CTGAACTGAACATTGACTCTAGCACCCTCCTATCGGGTTCCTCCCCTCCA
CTTTAGGGCAAGTATTCTGAGGCGGACCCTCTGTACAAACGAGCTGCTGC
GATGAACGAGGCCGTTTTTGGTCCAGAACGCCCAAGAGTGGCTACAGATC
TCAACAACCGGGCAGAGTTGTTGAGCATTTGTTCATCTGCAACTTTCTAC
ACTAGCCTTGATCACACCCCTGTTGCACGATTCCCTCATATTCCAGGGGA
AGTACGATCAGGCCGATCCTGTGTATTCTCGAGCAATTAATATCTGGGAG
GCGGCACTAGGCCCTGAGCACCCCCAAGTGGCTACTGGACTCGACAACCG
GGCGCAGTTGTTGGAGAGCCAGGTGAGAGCCTTCAGAAATTTCCAGGAGT
TTTCTAGTGTTGGGATATGACTGTAGTGTTGTTGAACGTGCAGGTGAGGG
CCATCAGAATTTTCTGGGAAAAATCTCGTGGACAGAGAGAGGCGGACGTA
AATTTCGAAAAATATTCTGGTGGTGGGTGTGTCTTGCTCAACAACCGGGC
GGCGTTGTTGCAGAGACAGGTGAGAGCAAAACGATGCTTCTAGACGAGAA
CGTTCCTGCGCGGTTCTAGATCCCACTTGTTTTAATGTTCGACCCCGTCA
CGCTGTTGACTGTTCTCCAGGGAAAGTATGACGACGCGGAACTGTTGTAC
GTAAGAGCTATCGCTATCCGAGAGAAGGCGTTGGGCCCAGAGCATCCAGC
TCTTGCCTTGTCGCTCAACAACCGGGCGAATTTGTTGCAGATCCAGGTGA
GAACCGTGAGAATTTTCCGAGAATTTTCCGAGAATTTTCTGGTGGTGCTC
TGTGGATGTCAAAGCGCTCAACAGCCGGGCTTGTTGAGGGCACAGGTGTG
AGCCGTGAGAATTCTCCAGGGACGTTCTTGTGGTGCCCGATAGATGTTGC
AGGAGCTCAACAGCGGGGCGCAGTTGTTGAGAGCACAGGTGAGAGTCGAA
GGATTTCCCAGGATTTTTCTCGTCATTGTCGGCTCAAATTTCTACAGCAG
TGTTGCAAGAGACTACAGCTAGTACTTGGGACCCGGATTTTCTCGACCGG
GCAACTATGCCAAAGCTGTGCCCCTGAACGAACGGGCCACAGAGATTTGG
ATGGAAACCTTAGGTCCTGAGCACCCGACAGTGGCAACAGCTCTGAACAA
CCGGGCGAGACCCGATCAATGCTTCTATATGCTTCTAGAAGAAATGTTCC
TCCGCAGTTCTAGATCCGACTTATACTAAAAGAGAACAAACCTGTCGACT
GCATTCCAGGGGAAGTATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCT
GGCTATCCATGAGAAAGTTTACGGTCCTGATCACCCGAAGGTCGCTACAG
ACCTCAACGACTGGGTGTGGTTGTTGAGCATTTGTTCCTCCACAATCAAC
TCCATTAGCCTGAACCACACTCCTGTCATGCTTTTCTTTCACACTTCAGG
GCAAGTACGCCGAGGCCAAGCCACTGTACAAGCGCTCGCTGGCTATCAAT
GAGGAAGTGCTTGGTCCAGAGCATCCCCATGTGGCTTCATTGCTCAACAA
CCTGGCGGGGTTGTTGAAGAGTCAGGTGAGAACCGTGAGAATTTTCCAGG
AGTTTTCTGGTGGTGCTCTGTGGATGTCAAAGTGCTCAACAACCAGGCTT
GTTGAGGGTACAGATGAGAGCCGTGATCATTCTCCAGGAAAGTTCTTGTG
ATGCCCGATAGATGTTTCAGGAGCTCAACAGCCTAGGGTTGTTGAAGGAT
CAGGTGAGACCAGCGGAAACACTCCAGGAAATTTGGGCGGGGTTGTTGGA
GAGCCAGGTGAGAGCCGTCAGAAATTTTCAGCTTTTCTCCTGGGGTCCAA
ATTTGTCGGTGAATCGTTTTTGCTCTTGGTGGGCCACTTCCTCACATCAA
CCCACTACTTCTTTCGCAGGGCAAGTACGACGAAACCGGACCGTTGTATG
AACGTTCTCTTGCCATCCGCGAGAAAGTGTACGGGCCTGATCATCCTGCG
GTGGCAATAGCGCTCAACAACCGGGCGTGGTTGTTGAGCATTTGTTCCTC
CACAATCAACACCACTAGCCTGAACCACACTCCTGTCGTGCTTTTATTTC
ACACTTCAGGGCAAGTACGCCGAGGCCGAGCCATTGTACGAGCGGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1323:23192..26389-

>mRNA_P-littoralis_Contig1323.7.1 ID=mRNA_P-littoralis_Contig1323.7.1|Name=mRNA_P-littoralis_Contig1323.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig1323:23192..26389- (Pylaiella littoralis U1_48)
CAGGGCACCTATGCCGAAGCTGTGCCCCTGAACAAACGGGCCACGGAGAT
TTGGATGAAAGTCTTAGGTCCTGAGCACCCGACAGCGGCAACAGCGCTCA
ACAACCGGGCGATGTTGTTGGGGAAGCAGGGGAAGTATGAAGAGGCAGAG
CCACTTTACAAGCGCTCGCTAGCTATTGATGAGAAAGTTTACGGCCCCGA
CCACCCGGCGGTGGCTACAGACCTCAACAACTGGGCGGGGTTGTTGAAGA
ATCAGGTGAGAGCCATTTTTTTTCTTAAAAATTTCTCACAAGCCATACGA
GAGAAGGTGCTGGGTCCGGAGCATCCTGATGTGGCCGCATCGCTCAACAA
CCGGGGCGTGGGCAAGTATTCTGAGGCGGACCCTCTGTACAAACGAGCTG
CTGCGATGAACGAGGCCGTTTTTGGTCCAGAACGCCCAAGAGTGGCTACA
GATCTCAACAACCGGGCAGACCTTGATCACACCCCTGGGAAGTACGATCA
GGCCGATCCTGTGTATTCTCGAGCAATTAATATCTGGGAGGCGGCACTAG
GCCCTGAGCACCCCCAAGTGGCTACTGGACTCGACAACCGGGCGCAGTTG
TTGGAGAGCCAGGGAAAGTATGACGACGCGGAACTGTTGTACGTAAGAGC
TATCGCTATCCGAGAGAAGGCGTTGGGCCCAGAGCATCCAGCTCTTGCCT
TGTCGCTCAACAACCGGGCGAATTTGTTGCAGATCCAGGTGAGAACCTAT
GCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTATCCATGAGAAAGT
TTACGGTCCTGATCACCCGAAGGTCGCTACAGACCTCAACGACTGGGGCA
AGTACGCCGAGGCCAAGCCACTGTACAAGCGCTCGCTGGCTATCAATGAG
GAAGTGCTTGGTCCAGAGCATCCCCATGTGGCTTCATTGCTCAACAACCT
GGCGGGGTTGTTGAAGAGTCAGGGCAAGTACGCCGAGGCCGAGCCATTGT
ACGAGCGGTCA
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