mRNA_P-littoralis_Contig1320.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.210e-45 Identity = 86/154 (55.84%), Postives = 108/154 (70.13%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRGLRPRSRRVSAADVKPFHVRPVHLRHKIGDEFAQYAWGPDFRLPESSDLQPKYQTLVDCRQFATQTG-RLQWEFKGLTPSGTES 459
+AAR KANASI R SAGV ++SLVLVR S RHRD RG KLQHD+YTGPW V +++ GLSV+V M G + RSRRVS ADVKPFH+R + LRH + +EFAQ+AWGPDF+LP + T+ DCR+ +G R WE+KG + +G S
Sbjct: 1623 VAARAKANASIDRSSAGVGVMKESLVLVREFESCRHRDHRGRKLQHDLYTGPWKVTGIIQPGLSVEVMMHGRKKRSRRVSTADVKPFHLRELPLRHSLAEEFAQHAWGPDFKLPPGAKESLGLVTIADCRRVQPASGMRTVWEYKGKSGNGVVS 1776
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE) HSP 1 Score: 152 bits (385), Expect = 4.820e-40 Identity = 80/153 (52.29%), Postives = 106/153 (69.28%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRGLRPRSRRVSAADVKPFHVRPVHLRHKIGDEFAQYAWGPDFRLPESSDLQPKYQTLVDCRQFATQTGRLQWEFKGLTPSGTES 459
+AAR KANA+I R SAGV+ R+SLVLVR S R+RDRRG +LQHD+YTGP V +V+ GL V+V + G R R+RRVS ADVKPFH+ P LR I DEFA YAWG D +LP + ++ ++ DCR+ ++T ++ WE++G SG S
Sbjct: 619 VAARAKANATIERSSAGVAVGRNSLVLVRETESRRYRDRRGRELQHDLYTGPSKVTDVIRPGLIVEVSLHGRRKRTRRVSTADVKPFHLSPPSLRLSISDEFAAYAWGADVKLPSGAAELLEFVSIADCRRSRSRT-QVVWEYRGKLGSGAVS 770
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE) HSP 1 Score: 150 bits (378), Expect = 4.690e-39 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRGLRPRSRRVSAADVKPFHVRPVHLRHKIGDEFAQYAWGPDF 333
+AAR KANA+ + SAGV+ R+SLVL+R S RHRDRR KLQHD+YTGPW V +V++ GLSV+V + G R RSRRVS ADVKPFH+RP LRH I DEFA YAWGPDF
Sbjct: 1292 VAARAKANATFEKSSAGVAVGRNSLVLIRETESRRHRDRRERKLQHDLYTGPWKVTDVIQPGLSVEVSLHGRRKRSRRVSTADVKPFHLRPPSLRHSIADEFATYAWGPDF 1402
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.190e-24 Identity = 58/90 (64.44%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRGLRPRSRRVSAADVKPFHVR 270
+AAR KANASI R SAGV +DSLVLV S RHRD RG +LQHD+YTGPW V V++ GLSV+V M G + RSRRVS ADV PFH+R
Sbjct: 1606 VAARAKANASIERSSAGVGDVKDSLVLVGESESSRHRDHRGRELQHDLYTGPWKVTGVVQPGLSVEVMMHGRKKRSRRVSTADVNPFHLR 1695
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 6.970e-19 Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRG 213
+AAR K+NA+ISR +A V+ ++ +LV+VR S RHRD+RG KLQHD+YTGPWTV EVL++GLSVQV+M+G
Sbjct: 1010 VAARAKSNANISRSTASVTVEKGNLVMVREADSSRHRDKRGRKLQHDLYTGPWTVEEVLQRGLSVQVKMQG 1080
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Match: A0A6H5JV25_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV25_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.150e-18 Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 1 MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTGPWTVVEVLEKGLSVQVEMRG 213
+AAR KANASI R SAGV +DSLVLVR S RHRD RG KLQHD+YTGPW V +++ GLSV+V M G
Sbjct: 238 VAARAKANASIERSSAGVGVMKDSLVLVRESESSRHRDHRGRKLQHDLYTGPWKVTGIIQPGLSVEVMMHG 308 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1320.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1320.4.1 >prot_P-littoralis_Contig1320.4.1 ID=prot_P-littoralis_Contig1320.4.1|Name=mRNA_P-littoralis_Contig1320.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp MAAREKANASISRPSAGVSADRDSLVLVRTPASLRHRDRRGMKLQHDVYTback to top mRNA from alignment at P-littoralis_Contig1320:35095..35553+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1320.4.1 ID=mRNA_P-littoralis_Contig1320.4.1|Name=mRNA_P-littoralis_Contig1320.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig1320:35095..35553+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1320:35095..35553+ >mRNA_P-littoralis_Contig1320.4.1 ID=mRNA_P-littoralis_Contig1320.4.1|Name=mRNA_P-littoralis_Contig1320.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig1320:35095..35553+ (Pylaiella littoralis U1_48)back to top |