mRNA_P-littoralis_Contig132.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.105.1
Unique NamemRNA_P-littoralis_Contig132.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 9.690e-47
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            +TWRVILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQE+LPGACLAVLVAD WRDSQVD
Sbjct:  110 DTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRDSQVD 200
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BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 9.740e-47
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            +TWRVILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQE+LPGACLAVLVAD WRDSQVD
Sbjct:  110 DTWRVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQEQLPGACLAVLVADAWRDSQVD 200
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.830e-46
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            ETWRVILCWASA R I+VD+QGIP SL++LQVRSG+DS+SP FRQLNIATFGHRVVRYTPMT FGK WQE+LPGACLAVLVADTWRDSQVD
Sbjct:  132 ETWRVILCWASAGRRIDVDSQGIPFSLLSLQVRSGVDSQSPLFRQLNIATFGHRVVRYTPMTAFGKKWQEQLPGACLAVLVADTWRDSQVD 222
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BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.040e-45
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQV 270
            E+WRVI CWASA REIEVDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+T FGK WQ++LPGACLAVLVA+ WRDSQV
Sbjct:  132 ESWRVIFCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVAEVWRDSQV 221
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5K2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.060e-44
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            +TWRVILCWASA + I+VDTQGIP+SLVNLQVRSG+D +S FFRQLNIA FGHRVVRY P++ FGK WQE+LPGACLAVLVAD WRDSQVD
Sbjct:   95 DTWRVILCWASAGKRIDVDTQGIPISLVNLQVRSGVDLQSRFFRQLNIAAFGHRVVRYAPISAFGKKWQEQLPGACLAVLVADAWRDSQVD 185
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.450e-43
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQV 270
            E+WRVILCWASA R IEVDT GIP+SLV+LQVRSGIDS+SPFFRQLNIATFGHRVVRY P+T FGK WQ++LPGACLAVLVAD WRDSQV
Sbjct:  112 ESWRVILCWASAGRRIEVDT-GIPISLVSLQVRSGIDSQSPFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRDSQV 200
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.900e-43
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            ETWRVILCWASA REIEV+TQGIP+SLV+LQVRSG+DS+SP FR L IATFGHRVVRY P+T F K WQE+LPGACL VLVAD WRDSQVD
Sbjct:  125 ETWRVILCWASAGREIEVNTQGIPISLVDLQVRSGVDSQSPLFRPLTIATFGHRVVRYAPITAFRKKWQEQLPGACLVVLVADAWRDSQVD 215
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BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.700e-41
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEK-LPGACLAVLVAD 249
            +TWRVI CWASA R I+VDTQGIP+SLVNLQVRSG+DS+SPFFRQLNIATFGHRVVRY P+  FGK WQE+ LPGACLAVLVAD
Sbjct:  165 DTWRVIFCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPFFRQLNIATFGHRVVRYAPIAAFGKKWQEQQLPGACLAVLVAD 248
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.250e-41
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMF----------GKTWQEKLPGACLAVLVADTWRDSQV 270
            +TW VILCWASA R I+VDTQGIP+SLVNLQVRSG+DS+SP FRQLNIATFGHRVVRY P+T F          GK WQ++LPGACLAVLVAD WRDSQV
Sbjct:  112 DTWLVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPLFRQLNIATFGHRVVRYAPITAFVXXXXXXXXXGKKWQKQLPGACLAVLVADVWRDSQV 211
[Close]
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.450e-37
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIATFGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD 273
            +TWR ILCW SA R IE+D +GIP SL NLQVR+GI+S SP FRQLNIA+FGHRVVRY P+T F  TW+++LPGACLAVLVAD WRD Q+D
Sbjct:  135 DTWRAILCWGSAGRRIEIDHEGIPASLSNLQVRAGIESSSPRFRQLNIASFGHRVVRYEPLTTFCMTWKKRLPGACLAVLVADAWRDCQLD 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNU8_9PHAE9.690e-4785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE9.740e-4785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.830e-4685.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI4.040e-4584.44Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K2W2_9PHAE1.060e-4480.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMS8_9PHAE6.450e-4384.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE7.900e-4381.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE1.700e-4182.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE79_9PHAE5.250e-4174.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE1.450e-3771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:508507..508781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQN9
Model size275
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.63e-46
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789606.1992698-CDS-P-littoralis_Contig132:508506..5087791680789606.1992698-CDS-P-littoralis_Contig132:508506..508779Pylaiella littoralis U1_48CDSP-littoralis_Contig132 508507..508779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.105.1prot_P-littoralis_Contig132.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 508507..508779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.105.1

>prot_P-littoralis_Contig132.105.1 ID=prot_P-littoralis_Contig132.105.1|Name=mRNA_P-littoralis_Contig132.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
ETWRVILCWASADREIEVDTQGIPMSLVNLQVRSGIDSKSPFFRQLNIAT
FGHRVVRYTPMTMFGKTWQEKLPGACLAVLVADTWRDSQVD
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mRNA from alignment at P-littoralis_Contig132:508507..508781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.105.1 ID=mRNA_P-littoralis_Contig132.105.1|Name=mRNA_P-littoralis_Contig132.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=275bp|location=Sequence derived from alignment at P-littoralis_Contig132:508507..508781+ (Pylaiella littoralis U1_48)
GAGACCTGGCGAGTGATCCTCTGCTGGGCATCAGCTGACAGGGAGATCGA
AGTCGACACCCAGGGCATCCCGATGTCTCTTGTGAACCTCCAGGTCCGAT
CTGGTATCGACTCAAAGAGCCCGTTTTTCAGACAACTTAACATAGCGACC
TTCGGGCACAGAGTCGTGAGATATACCCCCATGACCATGTTCGGCAAAAC
GTGGCAAGAAAAGCTGCCAGGAGCCTGTCTCGCTGTCCTCGTCGCCGACA
CTTGGCGCGATAGTCAAGTCGACCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:508507..508781+

>mRNA_P-littoralis_Contig132.105.1 ID=mRNA_P-littoralis_Contig132.105.1|Name=mRNA_P-littoralis_Contig132.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig132:508507..508781+ (Pylaiella littoralis U1_48)
GAGACCTGGCGAGTGATCCTCTGCTGGGCATCAGCTGACAGGGAGATCGA
AGTCGACACCCAGGGCATCCCGATGTCTCTTGTGAACCTCCAGGTCCGAT
CTGGTATCGACTCAAAGAGCCCGTTTTTCAGACAACTTAACATAGCGACC
TTCGGGCACAGAGTCGTGAGATATACCCCCATGACCATGTTCGGCAAAAC
GTGGCAAGAAAAGCTGCCAGGAGCCTGTCTCGCTGTCCTCGTCGCCGACA
CTTGGCGCGATAGTCAAGTCGAC
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