prot_P-littoralis_Contig132.81.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig132.81.3
Unique Name	prot_P-littoralis_Contig132.81.3
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	355

Homology

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BLAST of mRNA_P-littoralis_Contig132.81.3 vs. uniprot
Match: D7FZM3_ECTSI (HABP4_PAI-RBP1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZM3_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 9.880e-84
Identity = 227/362 (62.71%), Postives = 241/362 (66.57%), Query Frame = 0

Query:    5 HIPKLVFCHLHSFFTSPTPVFSLRA-TPHPRW-VFHLIVLRFFR--GREVKKSGGGGRNWGNDAAAGMDNAAANAENDXXXXXXXXXXXXXXXXDPEPAAVTEGADGGEGDGGESPKDDTPPAXXXXXXXXEIQLTLDEHQAALDAKAKELADMVGDVSIKTVDDSEFAEGAIRQKQDVEEEGYMGGKATKTRKVKTQ-RTREVFQDVGFRAPAMNSGGGDGXXXXXXXXXEGXXXXXXXXXFDRGDRPQRSGYGXXXXXXXXXXXXXXXXXXXXGYDRENRXXXXXXXXXXXXXXGPPRPRFQGGGGG----YRGEGXXXXXXXXXXYQGGXXXXXXXXX---ARASAPLNLKDDEAFPSL 354
            H PK  +C    F+   T V S R+ T  PRW VF L         GRE+KKSGGGGRNWGNDAAAGMDNAAANAEN+                      +TE  DG   DGGESPK+DTP          EIQLTLDEHQA LDAKAKELADM+G+VSIKTVDDSEF +GAIR KQDVEEEG+MGGKATKTRKVKTQ R +EVFQDVGFRAPAMNSGG DG  XXXXXXX  XXXXXXXXXFDRGDRPQRSGY XXXXXXXXXXXXXXX         +                GPPRPRF GGGGG    +RGEG          YQG XXXXXXXX    AR SAPLNLKDDEAFPSL
Sbjct:  155 HFPKFSYC----FWCVTTLVGSGRSNTSRPRWMVFELKAATMLLEWGREIKKSGGGGRNWGNDAAAGMDNAAANAENEAEGDQGAGWGANGSAAPNAEDPMTETGDGQATDGGESPKEDTPAPRVPEPEPEEIQLTLDEHQAMLDAKAKELADMIGEVSIKTVDDSEFNDGAIRNKQDVEEEGFMGGKATKTRKVKTQQRAKEVFQDVGFRAPAMNSGG-DGRGXXXXXXXXXXXXXXXXXXFDRGDRPQRSGYXXXXXXXXXXXXXXXXEGDESTPAEDG---------------GPPRPRFHGGGGGRGXXFRGEGRG--------YQGXXXXXXXXXYRGDARTSAPLNLKDDEAFPSL 488

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig132.81.3 vs. uniprot

BLAST of mRNA_P-littoralis_Contig132.81.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FZM3_ECTSI	9.880e-84	62.71	HABP4_PAI-RBP1 domain-containing protein n=2 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 47..150 e-value: 2.9E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig132	contig	P-littoralis_Contig132:363365..371559 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig132.81.3	mRNA_P-littoralis_Contig132.81.3	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig132 359920..373551 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig132.81.3 ID=prot_P-littoralis_Contig132.81.3|Name=mRNA_P-littoralis_Contig132.81.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=355bp
MKECHIPKLVFCHLHSFFTSPTPVFSLRATPHPRWVFHLIVLRFFRGREV
KKSGGGGRNWGNDAAAGMDNAAANAENDGEEASWGANGAAPNAEDPEPAA
VTEGADGGEGDGGESPKDDTPPAPRPEPEPEEIQLTLDEHQAALDAKAKE
LADMVGDVSIKTVDDSEFAEGAIRQKQDVEEEGYMGGKATKTRKVKTQRT
REVFQDVGFRAPAMNSGGGDGRGRGRGRGREGGRGRGGGRGFDRGDRPQR
SGYGGGEGEEGSRGGGNWRGGGRGGYDRENRGEDGGDGAAPKEDGGPPRP
RFQGGGGGYRGEGRGEGRGEGRGYQGGGGGGGYRGDARASAPLNLKDDEA
FPSL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006861	HABP4_PAIRBP1-bd