mRNA_P-littoralis_Contig132.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.60.1
Unique NamemRNA_P-littoralis_Contig132.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 2.360e-135
Identity = 248/379 (65.44%), Postives = 276/379 (72.82%), Query Frame = 3
Query:   21 MDAATETLTLRRQLEKAVLSEDVERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAMDAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 1157
            MDA+ ET  LRRQLEKAV +EDVER+ DVL SLG V+VTLAVLQESKVG+TVSKLKKH++E VS SAKALVKKWKRV E+SG QG                 P SAGKG G S +E  S SGXXX                      A   L      T      A +  S A PLSRQ+S  SSTSEL  ++EVD +L +D   P RL+MR+K+ DTLLLGS ED+R+PTA VAK VECAM+  +PY  KK  YL KARQLVFNLKKNDQLRQDVREG V P+RLV MTSTELM+KDK+E MDKA +ERTEARMLDWYDKN+DKINKQCGIKET+GMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC
Sbjct:    1 MDASAETAVLRRQLEKAVSAEDVERIADVLGSLGKVEVTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXXXSP-PGSAGKGSGASKQEVPSPSGXXXXXXXXXXXXXXXXXXXXXXATAATSPLKGAVGKT------ATSSTSEAVPLSRQTS-GSSTSELCTTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIPTARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 213 bits (542), Expect = 8.950e-59
Identity = 151/381 (39.63%), Postives = 207/381 (54.33%), Query Frame = 3
Query:   27 AATETLTLRRQLEKAVLSEDVERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAMD----AKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 1157
            AA E   LR  +EKAV   D  R+CD+L  L  VD+T+ ++ ESK+GS VSKL+KH++  V+  AKALVK WK++ +++G +G   A     +                           XXX SA A + LR        +P       D     T +  S A      A P   Q+  ++ ++   AS      L+EDGL P+RL+MR+K L+  +L   ++   P   +A    C ++    AK P+           RQL+FNLKKN  LR DV  GAV    L+ M+ TE++S  K++ M+  + +  +AR +DW +KNQD+INKQCGI   EGMFECGRCKS KT Y QKQTRSADEPMTTFVTC +C  +W+FC
Sbjct:    5 AAREVAELRDAMEKAVTKADAPRVCDILSQLEKVDMTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGSNRA-----QEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEQKLRVQ------APVEKALK-DLRRGSTDSFVSDASPRVGGAKPAKAQTPKATVSAAHMAS------LQEDGLLPNRLKMRQKFLEIFVLPEDDESAAPDGQLAAEAACGVERELNAKFPF----------VRQLLFNLKKNAALRSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 6.770e-46
Identity = 135/382 (35.34%), Postives = 189/382 (49.48%), Query Frame = 3
Query:   27 AATETLTLRRQLEKAVLSED-----VERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAMDAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 1157
            +A   L  + +LEKA+  E       ER+ D++  L  V VT+  L+++KVG T+ KL+KHS++ V+ +AK L+KKWKR+ E     G  AA +PA        AP       G S +   S+                    GG          D    D                   +++       +L        V  E+GL P RL++R+++  T+     +      A  A+ VE A+     +  K ++Y  K RQL FNLKKN +LR DV  G++AP+ LV ++S EL + D + E  +   +   A   DW   N  K+N  CGIK+ EG+F+C RCKS KTT+TQKQTRSADEPMT FVTC NC NRWKFC
Sbjct:    5 SAETVLPFKDKLEKAIAKESNGESKAERIIDLIGRLNEVPVTVDDLRDTKVGLTIGKLRKHSDQSVAGAAKKLLKKWKRMAEGE-MTGEAAANTPA-------PAPSPPAASNGASEEGVASN--------------------GGXXXXXXXXXXDXXXXDK------------------KKADDEGGVPDL--------VQGEEGLVPQRLKVRERMF-TIFTQDVDASVQKGAAAAREVEAAIHEIFNFSQKTKEYSAKVRQLNFNLKKNSKLRADVVNGSLAPDLLVQLSSDELATDDLRNERARIREDAINASRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD)

HSP 1 Score: 166 bits (421), Expect = 3.020e-42
Identity = 130/364 (35.71%), Postives = 180/364 (49.45%), Query Frame = 3
Query:   78 SEDVERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLL---GSPEDQRLPTAHVAKNVECAMDAKSPYFY---KKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            S D   + DVL++L    +T  +L+E+K+G TV K++KH NE +++ AK LVK WK +  S       A AS +  +   K +  S+  G  +  K   S+S                  + G  P  A               SR P +  PA                             GL   R  +R KL + L     G PE+       +A  +E +M       Y    K+DY  K RQL FNLKKN  LR+D+ + AV+ E+L+ M++ EL +++K+ E+ K  ++  +   LDW D N+DKINKQCGI+  +G+F CGRCKSTKT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:   19 STDAGEVLDVLRTLEKTTITYGILKETKLGHTVGKMRKHENEKIANQAKLLVKSWKSMALSPKP----ATASSSTPTLERKSSGTSSFDGDRIPKKSVNSTS----------------SSSNGAKPAAATPXXXXXXXXXXXXASRGPFI--PA-----------------------------GLDKVRATVRTKLKEILQATEGGDPEE-------IATAIEVSMARMFNMGYPGENKKDYTAKFRQLSFNLKKNTPLREDLLQDAVSAEQLINMSADELATEEKRNEILKLRDDAFQRARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.400e-42
Identity = 132/380 (34.74%), Postives = 180/380 (47.37%), Query Frame = 3
Query:   36 ETLTLRRQLEKAVLSE--DVERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLL---GSPEDQRLPTAHVAKNVECAMDAKSPYFY---KKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            E   L R+L K    E  D     DVL+ L +  +T A+L+E+K+G TV K++KH+NE +++ AK LVK WK +                                  LS K + S      AS G  ++ +         P                   +       AAP  R  S               G     G    R  +R KL +TL +   GS ED        A  +E AM       Y    K++Y  K RQL FNLKKN  LR+D+ + AV+ E+L+ M++ EL +++K+ E+ K  ++  +   LDW D N+DKINKQCGI+  +G+F CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:    3 EAQELHRRLLKFNRGETSDESATLDVLRKLETSTITYAILKETKLGHTVGKMRKHANEKLANQAKVLVKSWKNMA---------------------------------LSPKPSAS------ASEGGERIPKKSSSVSSTPPAXXXXXXXXXXXXXXXXXVKPQPQPVVAAPAPRARSK--------------GPFIPPGFDKMRATVRTKLKETLAVSDGGSAED-------TAVAIEVAMARMFNMGYPGENKKEYTAKFRQLSFNLKKNAPLREDLLQDAVSAEQLIAMSADELATEEKRLEVQKLRDDAFQKARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: W4G1Y0_9STRA (Transcription elongation factor S-II n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1Y0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.960e-40
Identity = 127/383 (33.16%), Postives = 197/383 (51.44%), Query Frame = 3
Query:   36 ETLTLRRQLEKAVLSEDVER--MCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERS--KYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAA-PLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAM------DAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            + + L ++L K +  ED ++  + D ++ L +VD+TLA+L+++K+G T++KL+KH  E VS  AK L+KKWK +   S          P  KSE    K +P ++     LS K+                                 W +   T        + P    PAA P++ + +   + S    S   + + +  GL   R  +R+KL + L +    +       VA  +E AM      D+       K+ Y  K RQ+ FNLKKN+ LRQ++    ++ ++L+ M+  E+ ++++++EMD+  ++  +   LDW + N DKINK CGIK+T G+F CGRCKSTKT+ TQ+QTRSADEPMT FV C NC  RWK
Sbjct:    3 DVVNLHKRLTKFLAGEDNDQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAEVVSSKAKHLLKKWKTLA--SRPSDSDIKVDPDVKSEMGTPKVSPTASD----LSAKDESK------------------------------WSVKVETIKDEP---KRPVKDDPAATPITIRRAPVHAFSSQRNSTPFEFIPK--GLQDVRATVRRKLKEVLSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A485KR39_9STRA (Aste57867_10364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR39_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.390e-39
Identity = 129/383 (33.68%), Postives = 182/383 (47.52%), Query Frame = 3
Query:   36 ETLTLRRQLEKAVLSEDVER--MCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASP---AAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAM------DAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            + + L ++L K +  ED ++  + D +  L  +++TL +L+++K+G TV+KL+KH  E V+  AK L+KKWK +                                        R S         A   + T                       T   S  P +A P   AAPL            +F S          GL   R+ +RKKL + L L   E+ R  +  VA  +E AM      D+       K++Y  K RQL FNLKKN  LRQD+   AV  ++L+ M+  EL ++++K+EMD+  +   +   LDW + N DKINK CGIK+T G+F CGRCKSTKT+ TQ+QTRSADEPMT FV C +C  RWK
Sbjct:    3 DVVRLHKRLTKFLGGEDNDQNAVADAMDHLDKIEMTLNILKDTKIGQTVAKLRKHDAELVASKAKNLLKKWKTLAS--------------------------------------RPSDSDIKVDTDAKSDVGT----------------PRPKVSPTTSESSEPQVAKPRPAAAPL-----------PVFKSQHAYFEFLPKGLADVRVTVRKKLKEVLNLAE-EELRSESEFVAVEIEVAMAREYKMDSARSMNEGKKNYTDKYRQLSFNLKKNAGLRQDLLCHAVTGDQLIKMSPDELATEERKKEMDQLRDFAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 319          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A6A5AKX6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKX6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.360e-38
Identity = 126/379 (33.25%), Postives = 187/379 (49.34%), Query Frame = 3
Query:   36 ETLTLRRQLEKAVLSEDVER--MCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERS--KYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTA---HVAKNVECAMDAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            + + L ++L K +  ED ++  + D ++ L +VD+TLA+L+++K+G T++KL+KH  E VS  AK L+KKWK +   S          P  KSE    K +P ++     LS K+  +                      G S C    H  H            PA  SP                +F   ++D V     + P  +  R +       G         A    VA   E  MD+       K+ Y  K RQ+ FNLKKN+ LRQ++    ++ ++L+ M+  E+ ++++++EMD+  ++  +   LDW + N DKINK CGIK+T G+F CGRCKSTKT+ TQ+QTRSADEPMT FV C NC  RWK
Sbjct:    3 DVVNLHKRLTKFLAGEDNDQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHEAEVVSSKAKHLLKKWKTLA--SRPSDSDIKVDPDVKSEMGTPKVSPTASD----LSAKDESNE---------------------GRSGC----HPHHN-----------PARTSP---------------RVFEPAQLDAVR----VHPEGIAGRARHRAPKAQGGXXXXXXXVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 320          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A7S2MN26_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN26_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.910e-38
Identity = 136/380 (35.79%), Postives = 187/380 (49.21%), Query Frame = 3
Query:   48 LRRQLEKAVLSEDVERMCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLD-------TLLLGSPEDQRLPTAHVAKNVECAMDAKSPYFYK--KEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKET---EGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            L+  L KA  S+D ER  D+L+ L  + +TL +L  + +G+ VSKLK H +  V+  AKALVKKWK++ +  G  GGGA+ S    S +S+  P         S+K++ S   XXX               G  +P GA                       P AP                        E D LPP R  +  KL +       ++L  +PE +    A V+     A++     F K  K  Y  KAR L FNLKKN  LR+++  G     +LV M+  +L + +K +  ++A++   ++R+LDW  KN+ KIN+ CGIK       +F CGRCKSTKTT TQKQTRSADEPMT FV C+NC NRWK
Sbjct:   39 LKENLSKA--SDDKERCMDILQRLEELPMTLQLLSATLIGTVVSKLKSHKDGAVASKAKALVKKWKKLAKEGGV-GGGASVS----SNKSEKRP---------SLKKSLSXXXXXX-------XXXXKSTTGSGAPAGA-----------------------PEAPK-----------------------EWDKLPPLRKNICTKLHNIFMTSPASVLDSAPELKDQSLAAVSAQRAAAVELAIQNFSKGAKASYTDKARTLFFNLKKNAPLRENILLGHTTAAQLVAMSPEQLATNEKAKARNEAASALNDSRLLDWEQKNESKINEMCGIKGELLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVFCTNCGNRWK 349          
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Match: A0A024TW44_9STRA (Transcription elongation factor S-II n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW44_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.380e-38
Identity = 130/380 (34.21%), Postives = 183/380 (48.16%), Query Frame = 3
Query:   36 ETLTLRRQLEKAVLSEDVER--MCDVLKSLGSVDVTLAVLQESKVGSTVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSKYAPVSAGKGPGLSVKEARSSSGXXXASAGAGKVLRTFDIAGGFSPCGAIWHLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLEEDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAM------DAKSPYFYKKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKKEEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 1151
            + + L ++L K +  +D ++  + D +  L  VD+TLA+L+++K+G T++KL+KH  E VS  AK L+KKWK +   S            GKSE     P                            KV  T   + G     A W     T    A+  R P+M + A      S   S+  E              GL   R  +R+KL + L L    D       VA  +E AM      D+       K+ Y  K RQL FNLKKN  LR ++    V  ++L+ MT  E+ + ++++EMD+  ++  +   LDW + N DKINK CGIK+  G+F CGRCKSTKT+ TQ+QTRSADEPMT FV C +C  RWK
Sbjct:    3 DVVNLHKRLTKFLAGDDNDQNGVADAMDHLNKVDMTLAILKDTKIGQTIAKLRKHDAELVSSKAKILLKKWKTLA--SRPSDSDIKVEADGKSEPGTPGP----------------------------KVSPT--TSDGSLKDEAKWPEKDET--APAITIRRPSMHALA------SQRGSTPFEFIPK----------GLQDVRATVRRKLKEVLCLAEAPDLVGEAELVAVAIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL7_ECTSI2.360e-13565.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CH25_9STRA8.950e-5939.63Transcription factor S-II-domain-containing protei... [more]
A0A7S2XYD9_9STRA6.770e-4635.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WZ99_GLOUD3.020e-4235.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XF33_9STRA7.400e-4234.74Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W4G1Y0_9STRA2.960e-4033.16Transcription elongation factor S-II n=3 Tax=Aphan... [more]
A0A485KR39_9STRA9.390e-3933.68Aste57867_10364 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A5AKX6_9STRA3.360e-3833.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2MN26_9STRA4.910e-3835.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A024TW44_9STRA8.380e-3834.21Transcription elongation factor S-II n=1 Tax=Aphan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:254330..262814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZL7
PFAMsMed26,TFIIS_C,TFIIS_M
Model size2318
Max annot lvl2759|Eukaryota
KEGG koko:K03145,ko:K03926
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons10
Evalue1.08e-141
EggNOG OGsCOG1594@1|root,KOG1105@2759|Eukaryota
Ec32 ortholog descriptionTranscription elongation factor TFIIS/CRSP70
Ec32 orthologEc-25_003580.1
Descriptiontranscription, DNA-templated
Cds size1140
COG categoryK
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.60.1prot_P-littoralis_Contig132.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 255488..262794 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.3537679-UTR-P-littoralis_Contig132:254329..2554871680789604.3537679-UTR-P-littoralis_Contig132:254329..255487Pylaiella littoralis U1_48UTRP-littoralis_Contig132 254330..255487 -
1680789604.474284-UTR-P-littoralis_Contig132:262794..2628141680789604.474284-UTR-P-littoralis_Contig132:262794..262814Pylaiella littoralis U1_48UTRP-littoralis_Contig132 262795..262814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.363962-CDS-P-littoralis_Contig132:255487..2556191680789604.363962-CDS-P-littoralis_Contig132:255487..255619Pylaiella littoralis U1_48CDSP-littoralis_Contig132 255488..255619 -
1680789604.3770273-CDS-P-littoralis_Contig132:256241..2563051680789604.3770273-CDS-P-littoralis_Contig132:256241..256305Pylaiella littoralis U1_48CDSP-littoralis_Contig132 256242..256305 -
1680789604.3854659-CDS-P-littoralis_Contig132:258013..2581391680789604.3854659-CDS-P-littoralis_Contig132:258013..258139Pylaiella littoralis U1_48CDSP-littoralis_Contig132 258014..258139 -
1680789604.393777-CDS-P-littoralis_Contig132:258822..2589521680789604.393777-CDS-P-littoralis_Contig132:258822..258952Pylaiella littoralis U1_48CDSP-littoralis_Contig132 258823..258952 -
1680789604.4019618-CDS-P-littoralis_Contig132:259276..2594031680789604.4019618-CDS-P-littoralis_Contig132:259276..259403Pylaiella littoralis U1_48CDSP-littoralis_Contig132 259277..259403 -
1680789604.416753-CDS-P-littoralis_Contig132:259848..2599111680789604.416753-CDS-P-littoralis_Contig132:259848..259911Pylaiella littoralis U1_48CDSP-littoralis_Contig132 259849..259911 -
1680789604.4328456-CDS-P-littoralis_Contig132:260053..2601511680789604.4328456-CDS-P-littoralis_Contig132:260053..260151Pylaiella littoralis U1_48CDSP-littoralis_Contig132 260054..260151 -
1680789604.4414222-CDS-P-littoralis_Contig132:260353..2604281680789604.4414222-CDS-P-littoralis_Contig132:260353..260428Pylaiella littoralis U1_48CDSP-littoralis_Contig132 260354..260428 -
1680789604.4499378-CDS-P-littoralis_Contig132:261558..2618201680789604.4499378-CDS-P-littoralis_Contig132:261558..261820Pylaiella littoralis U1_48CDSP-littoralis_Contig132 261559..261820 -
1680789604.4606397-CDS-P-littoralis_Contig132:262731..2627941680789604.4606397-CDS-P-littoralis_Contig132:262731..262794Pylaiella littoralis U1_48CDSP-littoralis_Contig132 262732..262794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.60.1

>prot_P-littoralis_Contig132.60.1 ID=prot_P-littoralis_Contig132.60.1|Name=mRNA_P-littoralis_Contig132.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=380bp
MDAATETLTLRRQLEKAVLSEDVERMCDVLKSLGSVDVTLAVLQESKVGS
TVSKLKKHSNEGVSDSAKALVKKWKRVVESSGAQGGGAAASPAGKSERSK
YAPVSAGKGPGLSVKEARSSSGSGGASAGAGKVLRTFDIAGGFSPCGAIW
HLDHTTFDTTALFSRAPAMASPAAPLSRQSSTSSSTSELFASVEVDGVLE
EDGLPPSRLRMRKKLLDTLLLGSPEDQRLPTAHVAKNVECAMDAKSPYFY
KKEDYLGKARQLVFNLKKNDQLRQDVREGAVAPERLVVMTSTELMSKDKK
EEMDKASNERTEARMLDWYDKNQDKINKQCGIKETEGMFECGRCKSTKTT
YTQKQTRSADEPMTTFVTCSNCKNRWKFC*
back to top

mRNA from alignment at P-littoralis_Contig132:254330..262814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.60.1 ID=mRNA_P-littoralis_Contig132.60.1|Name=mRNA_P-littoralis_Contig132.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8485bp|location=Sequence derived from alignment at P-littoralis_Contig132:254330..262814- (Pylaiella littoralis U1_48)
CTTAGGCAAGCAAGGTTGAGATGGATGCAGCCACGGAAACATTGACTCTT CGCAGGCAGCTGGAGAAGGCAGTGCTGAGTGAGGTGCGTGTGTGCGTGTG TGTTCGTAGGCGACAGAGACAGATACGCAAATGATATCATGCCGGTACAG CTGAAGCCGACACACTTCGTATTATACAAGACGAGTGAGATGCCAAGGTC CCAATACCTCAGCCCTCTCCCACAACGTGGGCATACTGCACTCAGGACAT CTGTCCGCAAAAGCTTTGGGCGGGATGATTCTATGCGTGCGACGAGTACT CTGTGAGGTAGGTTAGCTCGTGTCTGGTGTAGAATCGACCGCCATCCGCC CTAACTGTATGGTGTAGGGTGCAATCCTGTGCCTTGACCTTTCAGCACAC ACCCTCGAACTGAGTCTATCCAGCACACCGTCACCTCCGGCATCTCGGCA TCCTCGCGAGCGTTCGGCTATCTCTTCCATTCGGAGCTTTGAGCAGTCAT TGGTCGCAGGTTCATGGCATGTCATATTCCGCCATTGGAGAGCACTCCGT AGGCCATAACATTAGACGATGTGCGCCATGATCGTTTCAGACAATTGTAC GTCTAAGGCAAGGCGCAAATCCGCCAAGTACCTCTTCCCTCATACGTGGA AACCTGTTACTGTACAAGTACCTCACAGGGAATGGAGAGGGTACGTAGTG CCAAAGAGGTAGAGATCTTTCGAACGGCCTGCTATTGTAGGCATCTGGAT CCCTCTCCCGCAGAAAAAAGTTTACCCAGTACTTGGTATGATTTTAGTCA AAAAGGGACGGGGGGGGGGGGTCGCCCCCTACACAGTTGTTCGTGCGGAA CCTTCCGCCAAACGCAATGGCAAGTGTACTTGTACATATGGTCGTGGAAA TTGGGATTTTCCTGGATGGCGGTATTCGCTTGTTAGTTTAGTGGTGATGG TGCTGTTGATTGCTATGGCGATGAACGCGATGGTGATTTTGCAGGATGTG GAGCGCATGTGCGACGTGCTTAAATCTCTCGGAAGCGTGGACGTGACTCT GGCTGTTCTCCAAGAGAGCAAGGTCGGGTCGACGGTTTCAAAACTCAAGA AGCACAGCAACGAGGGGGTTTCCGACAGTGCGAAGGCGTTGGTCAAGAAG TGGAAGAGGGTGGTCGAGTCGTCGGGAGCTCAGGGTGGCGGTGCTGCCGC ATCTCCTGCTGGAAAGTCGGAAAGATCAAAATATGCCCCGGTTTCGGCGG GAAAAGGTGACGCCTGCATATCATTCTGAATTTTTTATTTTCGTGCGCAC GATGCATGTTGCTGAACGAATGTCAAACTAATGTTAACGGTCAAGCAACG CATCGTGTCTGGAACGATTGGAAATGACCTTCGACCGTTTCTCACGGTGC CGGAAATTCCTGCCGGAAATGACCTAGATTCGGTGACCGGCGAGACCCCC AGACGGCCCAATACCTGATATTTTGCTCTTGGACCACAACATCACGTGTC AACATCAACCGGTGCTCGGCCCCTAGGGCACCAATCGCCACCAAACCTTT TGGGATGTACGCTCCGGTGTTCTGAGCTTGGACGCACCAAGTGTGTAGGT TGTGGGCTCTGTCTACCTCGAAATTCCGGTTGCAGAGTGGTCCAAGGTTG AATTTTCGGTCGCAATTTTCAGGCGGCAACCCGCCCTTTTTCCCCATGAT TTCCGGCTTGAGCACCGATCGAAAAATGCGACCGAAAATTCAACCTCGGA CCACTCCGCCACCGGAATCTGGCGGTAGACAGAGCCCACAACCTACACAC TTGGTGCGTCCAAGCTCAGAACACAGGAGCGTAGATCCCAAAAGGTTTGG TGGCGATTGGTGCCCTAGGGGCCGAGCACCGGTTGATGTTGACACGTGAT GTTGTGGTCCAAGAGCAAAATATCAGGTATTGGGCCGTCTGGGGGTCTCG CTGGTCACCAAATCTAGGTCATTTCCTGCAGGCATATCCGCCACCATAAG TAACAGCCCCACAGAAAAGCTAGTGTGATGTTGGTTTTGTACCTCTTGTA TGACTCAACACCTCTTTCAACAATGGTTGTCACGTGTTGCGTGTAGTATT ACTGTCAGTAGGAGCGTGACAGGCGATTGTCACTGCGGGGTCATGTCCCT TTACATAGTCCACACATTTTTGTTTCAAGTCACGAGCGTTGTTAAGACGT TGCTTTCAGGATTCTCTGCAAACTTAGCTCAACCCTTTTATCAGGGCCCT ACGGTGGCTGGTTAACTGCTGGTGCTGTATCGATGCTGGTGTCCTATTTG GGATGCTATCTATGGAATCGTGCTGCGTGTGCTGTCGGTGATGCTACTGT TGCACTGTTGCCTACTCCACACGATTAAATTTACAGGTCCCGGTCTATCA GTAAAAGAGGCCAGGAGTTCCTCTGGAAGTGGCGGAGCGAGTGCGGGTGC TGGGAAGGTGTGTAGGGTCTTTGTTGGGCTGAAGTAACTCTGAACTGCGC CGCCGTCTGTGGTGTCTTCCAAAACACAGCATCAGCTTTGAATCTGGCAG TTGATAGAGTTAATGCTGTTGAGCAGCTCGCGACACTCCGGAGATGAAGA ACGATGCACCTCATGCTGGATCTCAACTTTTGTTGTCTTTCATTTTGCAA ACACCCAGAGCAGTGCGCACGTTTGACATTGCTGGTGGTTTCTCACCCTG TGGAGCAATTTGGCACCTCGACCACACAACATTTGACACGACAGCTCTTT TCTCCCGCGCTGTTAAATGGGCACACACCAGCCTGTCGGACCACCGCAAC TTGGATGTTTCACCACGTACCGTCCCCTGTTTTTGATCATTCATCGCCGA TGTCACGATGATCGGTTCTTGCTTGCTCCGCGTCTGCCGTCTTGTTTGTC CAGCCTGCGATGGCATCCCCTGCCGCGCCATTGTCCAGGCAGAGCTCCAC CTCTTCCTCTACCTCGGTGAGGTTTAACAAGCGTTTGGGACTGCTGGCAG CGAACCACTGCCGCAGCTCTCGTTGAGATCCTGAGCATTCTTTTTTCACG TAAAGCATACTCCAGACTTAAGACTTACCAATCAGAGAATCGCCCGAGCC TCGTCCGCATGACGGTAACGGAAGACACACGCCGCCTGCATACATGCCGT ATTCCAACACTCGTGCTGTCGATTACAGTAGCAGCATGTTGTGGCACGGG AAGTTCAGAAGCGAAAGGAGTCATGCGTGAGCGTGGAAGCGGGCAGCGCT CTGGAAATCCCTACGGTATCGCTATTGCCCCGTCCCTAGATGTACGTATG CTCCTGCGCCACGAAAGTAAATGAAACATGAGAAGTGTCGAGAGCCCGCG GAAGTGAAAAACTTGTTGACCCTTGTCCTGCCCCGATCGTTTCCTGGCCC TAACCAAAAAGGAACTGTTTGCGAGCGTGGAAGTGGACGGCGTACTGGAG GAGGACGGGCTGCCTCCTTCTCGCTTACGAATGCGGAAAAAGTTGTTGGA CACTCTGCTTCTGGGCTCCCCAGAGGACCAGCGGTTACGTGAGTACTTCG GACCAACCGTTCGGCGCGACCACCCACAAATATACTCGCTCTCAACAGTA CCCTTGTCCACGTCTCACAATCGACAGCAGTTATGTTCCAACACTGACGC TTATGGCGACATTCAGCAATATGCTTTACCACCGAGCGCTTCCAGCAGTG TTTTCAGCCCCGCTGACACCGATCAAGGCATCAACAAATCGTTCGGAAAG CACCCCTTTCACGTGACCACATGAACATCCCCTTCGGCTCACACGTCGCC GGCGTGGACTTTCAACCAACGTGTAACCCCGCCTCCTCGTCTCGCGCCGC GTTGTAATGCAGCGACTGCGCACGTGGCAAAGAATGTAGAGTGTGCGATG GACGCCAAGAGCCCATACTTTTATAAAAAGGAGGACTACCTCGGCAAAGC AAGGCAGCTCGTGTTCAACCTCAAGAAAAACGACCAACTCAGGTGGGGCA CGGCCTCGTGTCCGGATCGCATCACCGCCATCATCGTCGTCTCCACATCG TTTTCTCGTCACCACGGCACACTGACTGTGCAGTACTCTGGCCTGACTTC GCGACCATCCCCAGCCTAACCCTATCCCCAACCCTAACTCTATTCGGGTC ATGACGAGTATCAATGAATTTTCTCTCGTTCTACTTTCTGAAGACACGCC ACTGTTGTGTTACTGTACGTCAACTATAGCGCATAGCAGTAGGGGTCATC ACATGATGGCATCAAATACACTCCCGCTGATCCAAATTATGAGGTCGATG TGGACGTTCCGCAAAATGCGCGGTGAACACTTATCATACGGTTTTTTGGG ATAGTGAGTTCGACCCCCAGCCGAAACACCTTGGATCGCAAGTACCGTTT ATCTTTTCACGCGTGGCGTTTGAAAAACGTGCCGTGGTTGGCTCGCACCC CTGCTCAAAACCTGCTGCTCGTGAATCTGTCTCTTCTCGTATCGTGCATG CAAAACGTCTGTCGCCCCCCCCAATGAATGTAAGTCGGCTGGCCGCTGTC GCTTATTACCATCTCGCCTAATGTATGCATATGTACCACCCTGCAACCCG AAATGTGTTGCTGAGCTCTATACCGCTGTCGGCCCATACCGTTCTCTGTC TGTCTCTTCTTTTTTTTGTTTTTAGACAAGACGTGCGAGAAGGCGCCGTG GCGCCGGAGAGGCTAGTGGTCATGACGTCGACGGAGCTCATGTCCAAGGA CAAGAAGGAGGAGATGGACAAGGCCTCCAACGAAAGAACGGAGGCTAGAA TGTGAGTGGGTGGAGCTTGTCCCCTCGCCAGGACTTGCTGTTTGGAGGAA ACGCGTAAACGTTTGCTCCCGAGAGGGAATAGTATCCGATAAGGACTTAT CCACAAAACAAAGCAGTCAGCGCCGTGGATAAGTCCTTGTCGGATAAAAG GTGCAGCGGCGGGTTCGATTCCCATGTACTTTGATGCTCTCCATTGTAGA CGCTTCAGCGACTGGCGAGGGTTTCATCCGATAAAGACTTATCCACCAGA CAAAGCAGTCAGCGCTGACTGCTTTATCTGGTGGATGAGTCCTTCCGGGA TAGATGTGATACTTCGAAGTACATACATAGCACGAATGTGGAAATATATG CCTGTTGCCCATGCCCATCTCTACCACCACAGCAGATTGTTGGCGGTACT GGTGTCAGAAAGTTTACCGAAGCGGCCGTGCAAGGTCGGCTTGTATCACG GGGCACGAGTATATTCTCAACACTTGGGTACGATCGTAAAAGAGGATCAA GAAACGGCACACAACTCTGCGGTAGGAGGAGACAGGCAAGGCTGATGCAA AAGGAGACCCGCTGACGGTAAAATGTGCTTGCTTTTGAAGTACTCGAGTA TGATAGACGAGGGTGTCACCGGCACTGGCAGACGAAAGCTTACAGTTGGT TGAATGCGAAAGGGTGCCTTGCCGAACGTAGAAGACTTTCGAATACTCCA CACGTAGACGGCTCGTGCTTGACGAATGACAGCAGGGACAAGAGACAGGG CCGACCATTAGGTAGCCCTTTCCTTTTTGCTTTTGTGGTCTGCGCTGCAA TCCTTAGCAGAAGAGCGCATACACCGAAAATGTCACTTCTTTTTTGTGCA AGCCATACGGTAAATATTTTGTAGTCGATGCCTTGTTTCTAGTGGTTAGA CCTGTGATTGTCACCGGTTGGGTGTCGTTTTTTCACGGTTTCTCTTTTTC ACAGGTTTTCGTGTCTATTTTCTCCGTGAATTCGCGCTGCCTTTACTCCA GAAAGAGTGTGGGTGTATCGCGAAGTCGCATACTTATATCCATGGGTGCA TCATTGTTTTCGCGGACATGGAGGTGCTGTTTACAGGTCGGAACGCATTA ATGTGAAGACATCAGCATCATCATGGACGACAACATCAACAACAGCAACA CGAACAGTAAACACAACAACAGCAACGAGAACAGCAAAAACAACAACACC AACAACAACAGCTGAAAGATCAAGGTGTTATACACGTATGTTTTCTTGAG TTTATAGAACAGGAGTGCAGTCACTCTTTCTCGCCCACTCCCTGATAACA GGTAGGATGCCAATTCGGAAAGCCGGCATCTGTATTTGTAAAGACCTCCG CACCTCCACCGAAGCGAGGTAATATTTGTGAAACCGTTTCACCTCGGCAC TTTCCCGTGATCGAGAAATTTTATGTGAAAAAAAAAGAAGACATTACTCC CTTCGCAAAACTTGTCACATATCATAGTTGCGACATACTTCTGGTGCCTG CCTGCAAAGCACCATGCAACCTTCTTCGGTCTTCCGTATACCCTTCTTTT TTACTGTTTGTGTGTTTTTCGGATCTTCCTGGGGCTCGGCACTTTTGCGA CCACCAATTCGAAGTATTTTTGAGTTCTGGTTGCAGTACTCGATGAGTCG ACGTACTCATGCAATCACGGTGACGCCACCCTTTGTGCACTCACACACTC TTGGTGCAGGTTGGACTGGTACGACAAGAACCAGGACAAAATCAACAAGC AGTGCGGTATCAAGGAGACGGAGGTAAGCCTGCTTCGATGGAAAACTCCG CCCCTCTTTCGTTAAGTTATTCTTTATTTCCAACGAGTTATCTCTATGCC ATCGCGGATACCCGTGGTGTCGAAGTCGGTAGAGAGTTAACCACAGTATG GAGTTTCTGACAGCGGGGAAGTGGGCATGGACAGTTGCACCAACCCCAAC CACGACCACGAGACGGTGCCAGGTCGGCCGACGTCGAAATTTGTTAAATA TGTTTCGCATGGTGTACCCTTCTTCTGCCCTTTTCCACGGTAGCGCTAGT TCTCGATGTAGTATACTTCGTGGTACGTATGATTTTCCTGTCGCCCCTTG GCGTAGTTCTCATCCCTCGTGGTCGAATTTTCGTTCCGTCTCCCGTTGAC CGTGCCCGCCCTGCCTGCCTTCACCGCATGCGGTAAGCATGTCCATATGA TCATACCCAGGCGGGTGCGAATCGACCAAGGTGCCGAAACGTGCCGATAT ATTTTCCCTTTTCTTGCAACAACCCGGTCCCAACCAACTCAGATCCTTGA CCCTCACCCTTGGCCCAAATCCCGCGGCAATTTTATTTTTGTCCCTCATC GCTCGGCGTTTTCCCAAAACTTTTGATCTGTGTTATGTCCTATAGGGTAT GTTCGAATGCGGGCGCTGTAAGTCGACCAAGACGACGTACACTCAGAAGC AGACGAGGTCGGCCGATGAGCCGATGACGACGTTCGTAACATGCAGCAAC TGCAAAAATCGATGGAAGTTTTGCTGATGCTGTTAGGCTCGTCACTCCTT TGGGAGTTCGATGCCGGGACTTTTTTTTTTGTGTGTGTTTCTCAGGCTCG CCATGTGTTCGTACGAAGCCGGTTTTTTTCATGAACGGGGAGTGCTCACG AAAGATCTTGTCGAGATAACGTGTGATCATTGCAAAAATCGGCGAAAGGC GGTGAAAGGTTTTTGCTCGAGCCTCTTTGTCTGCTAAAAGCTCCCACGTG TAATGGGGCCGCGTTCAAGAGCACCCAAAAAAGCTCCCGATTTTTGCGAG CAAGCACAAGCTGCAGCCGGCTTCACGGTAGTGCAAACAACTACGGTAGT TGTTGCGAATGCGAAGGTGCAGAGCTAGACTTTGTGTGCGTGTTTACGTT GTTTCTGCAAACGTTTGTAGTAGTGCGGGAGTATCCAAGACTTATCTCGT ATCGGCCGGGGTCCAAAGTGGCATGTTTGCTGGCATTTGGTAGGCTGTTG TGCATACAGTAGGCGTCGTTACGTCCAAGTAGCCCGCTAACCCCAGCAAC ATTTATCCTATCCCACAAGTAAAACGTTACTGCTATGCTGACCGGCGTGC TCGTGTAGCATGGCGCCGTCAACGAACACGCTCAGGTTTTCAAGCTGGTA GGTCAAGATCGGTCACAATTCTCCATGACGGGCAAGTTGCAGCCCCTTTT TCGGAAGAACACGAAAAGTTGCAAGCTCTTGTTGGGAGGGCAACGAAAAT TCGATCCCAAATCATCCCATGATAGGCCGGCGCAACCGATGTTTTTGTCG GACACATCAATGTCGGACGTCCTTTTTCCACTCGGTTAAAGATAGCCCTC GGTGGCTCCACGAGAGGTTAAAATGGCTCTCCTCCTGCGTGTATGACTGT ATGCGGGTGTTACGCGGGTGTTACGTGTGTGTCACAAGTATGAGAATGCC CCGTGTGCATCGTTACAAGGAGCCGCCGTTTTTGCCAGTGTGCAAGACCC ATCATACAGGTTTAGGGGGGAATGCGATTTTTTCGTGTTCGGGTGTCGAG CGTGCCACTTGAAGCAGCAGAGGTACCTCAATGCATCTCTCGTGATACAC GGTAGTAGAGTCTGAAAACACGGTTCGATTTCCGCTCTTCTGCCGTCTGG TCTGCAGGGCTTCATCGCCCAGGAGTCGTTTGTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig132:254330..262814-

>mRNA_P-littoralis_Contig132.60.1 ID=mRNA_P-littoralis_Contig132.60.1|Name=mRNA_P-littoralis_Contig132.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig132:254330..262814- (Pylaiella littoralis U1_48)
ATGGATGCAGCCACGGAAACATTGACTCTTCGCAGGCAGCTGGAGAAGGC
AGTGCTGAGTGAGGATGTGGAGCGCATGTGCGACGTGCTTAAATCTCTCG
GAAGCGTGGACGTGACTCTGGCTGTTCTCCAAGAGAGCAAGGTCGGGTCG
ACGGTTTCAAAACTCAAGAAGCACAGCAACGAGGGGGTTTCCGACAGTGC
GAAGGCGTTGGTCAAGAAGTGGAAGAGGGTGGTCGAGTCGTCGGGAGCTC
AGGGTGGCGGTGCTGCCGCATCTCCTGCTGGAAAGTCGGAAAGATCAAAA
TATGCCCCGGTTTCGGCGGGAAAAGGTCCCGGTCTATCAGTAAAAGAGGC
CAGGAGTTCCTCTGGAAGTGGCGGAGCGAGTGCGGGTGCTGGGAAGGTGT
TGCGCACGTTTGACATTGCTGGTGGTTTCTCACCCTGTGGAGCAATTTGG
CACCTCGACCACACAACATTTGACACGACAGCTCTTTTCTCCCGCGCTCC
TGCGATGGCATCCCCTGCCGCGCCATTGTCCAGGCAGAGCTCCACCTCTT
CCTCTACCTCGGAACTGTTTGCGAGCGTGGAAGTGGACGGCGTACTGGAG
GAGGACGGGCTGCCTCCTTCTCGCTTACGAATGCGGAAAAAGTTGTTGGA
CACTCTGCTTCTGGGCTCCCCAGAGGACCAGCGGTTACCGACTGCGCACG
TGGCAAAGAATGTAGAGTGTGCGATGGACGCCAAGAGCCCATACTTTTAT
AAAAAGGAGGACTACCTCGGCAAAGCAAGGCAGCTCGTGTTCAACCTCAA
GAAAAACGACCAACTCAGACAAGACGTGCGAGAAGGCGCCGTGGCGCCGG
AGAGGCTAGTGGTCATGACGTCGACGGAGCTCATGTCCAAGGACAAGAAG
GAGGAGATGGACAAGGCCTCCAACGAAAGAACGGAGGCTAGAATGTTGGA
CTGGTACGACAAGAACCAGGACAAAATCAACAAGCAGTGCGGTATCAAGG
AGACGGAGGGTATGTTCGAATGCGGGCGCTGTAAGTCGACCAAGACGACG
TACACTCAGAAGCAGACGAGGTCGGCCGATGAGCCGATGACGACGTTCGT
AACATGCAGCAACTGCAAAAATCGATGGAAGTTTTGCTGA
back to top