mRNA_P-littoralis_Contig132.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.57.1
Unique NamemRNA_P-littoralis_Contig132.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.900e-51
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVAFE 282
            E+DVRDALAR TRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHK+RLHLFAHEGEKALKYF+MAT LC KD IRV FE
Sbjct:  664 ERDVRDALARQTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKQRLHLFAHEGEKALKYFEMATRLCAKDGIRVTFE 757          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-18
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYF 231
            VRDALA    G+ E  TPAG+IDV +  EVIE+K++K WK G+GQV AY   HPS  KRLHLFAH GE    KYF
Sbjct:   55 VRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYF 129          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-17
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYFKMATELCVKDRIRVAFE 282
            E   R+ALA    G+ E  TP+G ID    D VIE+K+   WK G+GQV AY  H+P   +RLHLFAH G+K   KYF+MA  +C    ++V FE
Sbjct:   48 ESSAREALASLIGGEREVETPSGFIDK-PSDAVIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFE 141          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-16
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFA--------HEGEKALKYFKMATELCVKDRIRVAFE 282
            +RD LA    G+TE  TP G IDV T  EVIE+KH++ +  G GQV  YGE+HP  KKRLHLFA         + E   +  +MA ++CV   I V FE
Sbjct:  293 IRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFALIEDVRSDRKIEDLDRKIEMAEKMCVTSNIEVTFE 391          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKAL-KYFKMATELCVK 258
            VRDALA    G TE  TP+G IDV +  EVIE+K+++ WK G+GQV AY  H+P   +RLHLFAH G++   KY ++A  +  K
Sbjct:  287 VRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCELAKAIAFK 370          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.800e-15
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 VRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAH 204
            VRDALA    G TE  TP+G IDV +  EVIE+K+++NWK G+GQV  Y  H+P   +RLHLFAH
Sbjct:  721 VRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 74.7 bits (182), Expect = 3.360e-14
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   40 GQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLF 198
            G+TE  TPAGSID+ T  ++IE+KH KNWK+ +GQV  Y  ++PSH+KR+HLF
Sbjct:  168 GETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQVLVYSAYYPSHEKRIHLF 220          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: A0A2P0VMM5_9PHYC (Uncharacterized protein n=1 Tax=Tetraselmis virus 1 TaxID=2060617 RepID=A0A2P0VMM5_9PHYC)

HSP 1 Score: 64.3 bits (155), Expect = 5.770e-11
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 EKDVRDALARHTRG-QTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLFAHEGEKALKYFKMATELC 252
            E  VRD LA+   G + E    +G ID+ T  E+IE+K    WK+ +GQ+ AYGE  P HKKR+HLF  + +    ++++A   C
Sbjct:   29 ESTVRDRLAKQLVGSRIEVPCSSGLIDIVTPTEIIEVKRAPLWKAAMGQILAYGEDFPKHKKRVHLFGKDDQ----HYRLAAVTC 109          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: L7RE44_9VIRU (KilA N-domain protein n=1 Tax=Acanthamoeba polyphaga moumouvirus TaxID=1269028 RepID=L7RE44_9VIRU)

HSP 1 Score: 60.8 bits (146), Expect = 4.920e-9
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLF 198
            EK ++  L +   G TE  T  G ID+ T++ ++EIK + NWK+ +GQ+ AY + +P   KR++LF
Sbjct:  150 EKQLKLKLQKKLGGTTEVPTSCGKIDLLTKNYIVEIKTYNNWKAALGQILAYSDQYPDKNKRIYLF 215          
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Match: A0A2P1EKB3_9VIRU (KilA-N domain-containing protein n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2P1EKB3_9VIRU)

HSP 1 Score: 59.3 bits (142), Expect = 2.260e-8
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKKRLHLF 198
            EK +++ L ++  G  E  T  G+ID+ T++ +IEIK++ NWK G+GQ+ +Y   HP   K L+LF
Sbjct:  179 EKIIQEELQKNLGGLIEVKTKVGAIDLLTKNTIIEIKNYDNWKHGLGQLLSYSIFHPDKTKCLYLF 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G3S0_ECTSI2.900e-5191.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G319_ECTSI1.100e-1860.00FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LFH9_ECTSI1.370e-1747.37FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
B5LW94_9PHYC1.310e-1646.46Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JJP2_9PHAE1.900e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5N7_9PHAE7.800e-1556.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K9VSH3_9CYAN3.360e-1458.49Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
A0A2P0VMM5_9PHYC5.770e-1140.00Uncharacterized protein n=1 Tax=Tetraselmis virus ... [more]
L7RE44_9VIRU4.920e-939.39KilA N-domain protein n=1 Tax=Acanthamoeba polypha... [more]
A0A2P1EKB3_9VIRU2.260e-840.91KilA-N domain-containing protein n=3 Tax=Mimivirus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:221262..221543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog449447.MAE_20210
Model size282
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.28e-15
EggNOG OGs2EUDG@1|root,338X1@2|Bacteria
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.2768333-CDS-P-littoralis_Contig132:221261..2215431680789604.2768333-CDS-P-littoralis_Contig132:221261..221543Pylaiella littoralis U1_48CDSP-littoralis_Contig132 221262..221543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.57.1prot_P-littoralis_Contig132.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 221262..221543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.57.1

>prot_P-littoralis_Contig132.57.1 ID=prot_P-littoralis_Contig132.57.1|Name=mRNA_P-littoralis_Contig132.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
EKDVRDALARHTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVK
AYGEHHPSHKKRLHLFAHEGEKALKYFKMATELCVKDRIRVAFE
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mRNA from alignment at P-littoralis_Contig132:221262..221543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.57.1 ID=mRNA_P-littoralis_Contig132.57.1|Name=mRNA_P-littoralis_Contig132.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig132:221262..221543- (Pylaiella littoralis U1_48)
GAGAAGGATGTCAGGGATGCGCTTGCTCGCCACACCCGAGGTCAAACCGA ATGGGGGACCCCGGCAGGCTCCATCGACGTTTTCACGAGAGACGAAGTAA TCGAGATCAAGCACTTCAAAAATTGGAAGAGTGGAGTCGGTCAGGTTAAG GCCTACGGAGAACATCATCCCTCACACAAGAAACGCCTACATCTTTTTGC GCACGAGGGAGAGAAGGCTCTTAAGTACTTCAAAATGGCCACGGAATTGT GTGTGAAGGATAGAATTCGCGTTGCATTTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:221262..221543-

>mRNA_P-littoralis_Contig132.57.1 ID=mRNA_P-littoralis_Contig132.57.1|Name=mRNA_P-littoralis_Contig132.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig132:221262..221543- (Pylaiella littoralis U1_48)
GAGAAGGATGTCAGGGATGCGCTTGCTCGCCACACCCGAGGTCAAACCGA
ATGGGGGACCCCGGCAGGCTCCATCGACGTTTTCACGAGAGACGAAGTAA
TCGAGATCAAGCACTTCAAAAATTGGAAGAGTGGAGTCGGTCAGGTTAAG
GCCTACGGAGAACATCATCCCTCACACAAGAAACGCCTACATCTTTTTGC
GCACGAGGGAGAGAAGGCTCTTAAGTACTTCAAAATGGCCACGGAATTGT
GTGTGAAGGATAGAATTCGCGTTGCATTTGAA
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