mRNA_P-littoralis_Contig1.438.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.438.7
Unique NamemRNA_P-littoralis_Contig1.438.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.438.7 vs. uniprot
Match: D8LBN6_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 4.110e-5
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = -1 
Query:  414 VVPDQVSVLDIKRRLESITGVPFLRQKLFFWCAFKD 521
            V+PD++SVLD+KRRLE ITGVPFLRQKL F    +D
Sbjct:  286 VMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRD 321
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BLAST of mRNA_P-littoralis_Contig1.438.7 vs. uniprot
Match: A0A6H5K1V2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.480e-5
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = -1 
Query:  414 VVPDQVSVLDIKRRLESITGVPFLRQKLFFWCAFKD 521
            V+PD++SVLD+KRRLE ITGVPFLRQKL F    +D
Sbjct:  372 VMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRD 407
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.438.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBN6_ECTSI4.110e-569.44Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6H5K1V2_9PHAE4.480e-569.44Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1891514..1898525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size521
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.4779656-UTR-P-littoralis_Contig1:1891513..18915971680789309.4779656-UTR-P-littoralis_Contig1:1891513..1891597Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1891514..1891597 -
1680789309.4871008-UTR-P-littoralis_Contig1:1898088..18981041680789309.4871008-UTR-P-littoralis_Contig1:1898088..1898104Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1898089..1898104 -
1680789309.5083-UTR-P-littoralis_Contig1:1898434..18985251680789309.5083-UTR-P-littoralis_Contig1:1898434..1898525Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1898435..1898525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.4973123-CDS-P-littoralis_Contig1:1898104..18984341680789309.4973123-CDS-P-littoralis_Contig1:1898104..1898434Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1898105..1898434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.438.7prot_P-littoralis_Contig1.438.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1898105..1898434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.438.7

>prot_P-littoralis_Contig1.438.7 ID=prot_P-littoralis_Contig1.438.7|Name=mRNA_P-littoralis_Contig1.438.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MWTGMRTVTSFSTQPVKESILLRSRHGLSLLPQKHAGGWLQVPAMPLSTD
VERTKRGDMWRAFARAECSQPFVRCVRRGYTGVEDGRSCQPWKREGARRR
PPPRRRQHP*
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mRNA from alignment at P-littoralis_Contig1:1891514..1898525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.438.7 ID=mRNA_P-littoralis_Contig1.438.7|Name=mRNA_P-littoralis_Contig1.438.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=7012bp|location=Sequence derived from alignment at P-littoralis_Contig1:1891514..1898525- (Pylaiella littoralis U1_48)
GACTGAGAGCACGACCTGGGCGGAAGGGACCAAGCGGGTTCGTTGGGAGC
TTTCGAGAGAGGAGGCGGGGCAGATTTACCGAAAAGGGCGGATGTGGACG
GGTATGAGAACAGTGACTTCGTTCTCGACTCAGCCAGTGAAGGAGTCGAT
CCTCTTGCGAAGCCGGCACGGTCTGTCGCTGCTACCGCAAAAGCATGCAG
GGGGTTGGTTGCAGGTGCCCGCCATGCCGCTCAGTACGGACGTTGAGCGC
ACCAAGCGTGGCGACATGTGGAGGGCGTTTGCGCGTGCCGAGTGCTCGCA
GCCTTTCGTGCGTTGCGTTCGACGGGGATACACCGGAGTGGAAGACGGTC
GTTCCTGCCAGCCATGGAAGAGGGAAGGAGCCCGCAGGCGCCCACCTCCA
AGAAGACGGCAGCATCCTTGAAGGCACACCAGAAAAAGTGAGAACTTCCA
GATAGCGCTGCCACTCAACAGAGCTTGAGAGTCTGATTGCTTCGAAAAAA
TTGCACACTCTGCTGTTGCATCTTCTGTCAGCGCTCCGAGGAGATATTAT
ATCGTAGAATTTGGGGGGGGGGGCAACGGTCTACCCGGGGCCAAAGAAGA
GGTGGGGGGGGCGAGATATCAAAGGAATAAACGGGAACGAAGATTTCCGG
GGGCTTGCTCCCAACAAAATGCCATCCACACCCCGAGACGCACACCTCTT
GCTTCCGCCATATGTCGGGCCTGTCTAGCGCGTCTACGAGAGAGCGTTTC
AAAAGCAGCAGTAATACGAAAACCAGTTTGAGGAGGACTTCTGTCCTTCG
TCGAGTAGCTGCGATGACACATCTCCTTTGACAGAAAAAAGATTATACCA
GGAACGAAGTATATGCCATGATGGGTACATAAATCTGAAAGTGTGGCGCC
GTCGAAGCGAATTCGGAAAACTTGTTTGTAGCATTCTACGCGTGAATTGC
CACTGGCGTCGCGTACCTTTCCCGTGAGGTATCGATAGGGCATCCCCTCC
GATGCTAGCTAACGCACACAGCTAACAATAGTTACGAGGGAGACTCCCTG
CCCACCAACATAGAGACTCCGATTTTCCACTCTGCTATTGCTATCGCAAA
ACCACACAACACCAACAGTGACAACAACAACGACAACAACAACGATAACA
CCAACAATGACAACAACGACGACGACAACACCACCAACAACAACAACAGC
AACAGTTGTCAATTGCCGGAGATGTTACGTGGGTACCATTTCTGAGTTTT
CCCCTGAGGTCGGGCAAAAGTTGTTCGCGAAAGAGGTCGTCCCCGGGGAA
AAGTAAGACTTAAGGGAGGAGCTCTGAAAAATCATATTTTGGTACGAAAG
TTTGCGCACCATTATGTTGTGCTCGATGTAGTCCACGTTGAAACCTCCTT
GGTGGCTTTTCGTATCCCGCGGGGGGAATACGAAACCAGGGTGGCGCTAT
CTGTACAAAATATCTGGTTTAGCATTGTTACAGTACATTCGGCATCAATT
AAATACTCCGGAGTACTAAATATACAATGAATCTCTACAGAAAGTCACAA
GCCCGGGAATGCTTGCCCAATGTCCCTGTGACACAGCGGTATGATAGCAG
CAGGCACCACACAACATGCAAGACTACGAGGAACGGTTTTCGGCCTATTC
CAACAGACGAAGTGTACGTCAGGGGACAACCTCCATACTCCCATGGGCGT
GCAAGGCCCGCAAGCACTCCCCGACCGAGCCGGATTACCCTCTGCACCCT
CAAGTTTTACGTTCCCTGCGCAAATAGCCGAAGCTGATGAATGAAGTAGA
AAGCGATCATACGGCACCGAGGGGTGGCGTTGTTGCTGCCTTTGCTGCCG
AAGCACCCACAAGCGGCAACGAGCGCTGCGGTACGTGCGGCCGCAAGATC
CGGATGGGGCCCTTCAAACGTCGTTACGTTCAGTTTTTTACAGCTCCGGG
GTCGAACTGCACCGGTTATGAAGAAACTTCGTCATCCGATCGCGGCATCG
ATGGTGTCAAGGCTCATCAAGCGACGTATTGGGTTGCGCAAATTGAAAGT
GCAAGGGGTCTGTCTCATTGTCCGGGAGCCTGCAACTCCATGTATTTTGA
AAAGGAAAGGTGGCACGCAGTCTCGTGAACCGAGTGCAGGAAGGCAACGT
GCATTTAGGGTTTCCCCTCTATGAAGTCGTATACGAGTGAGAAAGTAAAG
AGTGTGCCGCGTGTTTGGTCATCGCGGGGTTGTATGCGAATCCATTGGAA
CGAAGAGAACGTTCTGTGGGAGCCTCCGTTGGCCTGCTGTCTTTTTGGCA
CGAGCAGCACTGCGGTAGGATGATATTGAAATACTCAATGCTGGTAAAAC
TTACCCTAGTTTCACACCCTTACTCTTTCCGCTACACTAGGGTCATTTGG
TTTCCGGCAACATGTGAAGGAGTAGCGGATATTTCGGGCTACAACATGCC
GATTGCCCCCGGTTTACAGACTCCTCTATTTGACGCATATGTTCATCTGC
ACGGTTCTAAAATGTGAAGTGTGTTGCTGCATACGCGGGACAAAAGTATG
TTTATCAGACTGCCTGCATTTTAGGGTTCCCCTGAGTTTTTGGGGCTCCC
CTCAACAAACTTCGTGCATGATTTGGAAGAAGAAAGGGAAGGACGAATTG
TTTTGGTTTATCTCACTGTAGTCTGCGAATCCATCGCAACAAACTGTGTT
TTTGGAGGACCTGCCGATGGATCGTTTCATTGAATCAACCAAAACCAAAA
AAGGTAAACCATACGTACCAGATATAATTATAAAAAAAATATGCAAACAA
CAAGTGAAAGAAAAACTTCGAAACCCTTATCCTGCTCGCCATGGTGGTGT
TTGTTTATTTTCAGCGACATTTAGAAGGAAAGAGCTTCTAGTGGACTTCG
TGCCGATACCCTGTACGTTACGAGACTCCTGTTCGGCTAAAAGTTATGCC
CATCTTCTGCACCGAGCTAATATCTGCAAATTCTGGAGGTCACATCGGGA
TGAACCGCCGTGAAGAAAAACATCTCGCTCCGCGCGATCCATTTTTCAAA
TGAAATGGACGAGGGAATACTATGGCGGTCGAGACCTAGCCGTAAGCAAC
GAACACAAAATAAGGTGTCGCAATGCATTTACCTACGTTAGTTGTTTTTA
AAACTCATCAGACAGGCGTAGGATTCAGCATTCAGGATTCGCGGCTATCT
CCGTTCCTTGAGGTTATCAGCCTCATGAGGTTTTCGGCCTCAACAAGACC
ATGACTTGGGGCTGGCCTTAGTGTATACTACGAGGTGGGAATAATTTACG
TTCATGAAACGGCAATCCCATTCCATGAATCAGTACAGCAGTATTGGATG
AAGATACGGAAATTCTGCATGAAGCTGAAGTCTCATTTTTTTGCGAGCAA
CATTCTCCGTATGTTTTGTACTTCGAGGTACTCAATACCTCACTTTTATT
ATTTTCCCCTTTGCATATGTACAAGTGTACTCTCCGCGTACGCGCGCACT
CTATTTACGCATGAACTGAACCACGATGCTTTGATACTTCTGGTGTTGCA
CGCGCACGTGGGGCGTTCGCTTCCCACCGCCTTCTCCGCTTATCGGCCCA
ACCTCGCCCATCTCGTTCAGACCAGTGTAGACTCCCTTCCCCCCCGCGCA
CTCTCAATCGGACGGCCGACTACCCCCCCCTCGCGACTCCTCCTCGTCGT
CCTCGTACTCGTCCTCGCTCTCCTCGCTGGCCTTCTTGCGAGTCCTCGTC
GGCGCAGCTCGATGGCAGCGCCCAAGATCCATCCCCCTGTCGCGGCCATG
CCCGCAAGAGTACTGTTCTATGATAGCGGAGAGGTCTCACGCTGCGCGTG
CTGCCGTCGGTCTCCCGAAAACGCTCTCGAGGCGTAGCGGTCGCTCGTGC
GTGCTTGAGTATTTCGTTTGATGACTCCCCTGAACCACGGCCCATACCCA
GCCGAAGCAGAATATCTTGGTTGACGAGTGCCCGAGGTGAGGGCGGCAGG
TGCCGAGCTCACAATAAGAGTAAAACCAGCAGGGACCTCAAGCGGTCTAC
TTTAAGTGAGGCCTCGTCATCGGCGATGTTGTCTTCGATATCTAGAGTAG
CCAGCCCATCAACCTGTTCGTGTGGCCTGTTTTTGCCCCCGTCTATTCCT
TGGTCTCGTTCTCATCCTCGTCCCTTTACCCCGGCGGGCCCTCCGCACCA
GAGGGAGCCGGTGATATCGGCAGCACGACCTCCAGCGGCTCCGCCGTAGG
ATCATCGTCCATGGAGAAGTATGTGCCTCGCTTCGCCTTCAAAATTTACT
GCAAATGCGTGAGTCGTCGCTGCCGTCTGCCGTTATCCCCAACCCCGCCT
TCTCGGAAAGGTTCCTGTGGCATCTAATGTCCCTGTCGATATGCTTCGCG
GCCTCTCCGGTTCATTTGGTGAACAAGATCGTACGATCCGACGTGATCAG
CTTGTTGGGAGCATTTGTTTTTTCAGTTGACCCCACTTCGGAGCCAACGT
TTCAGAGCCTTGCCCACAGACCTTGAAGAGCTTCCCGTAGCTGGCATCTC
CACAGGTTGCACCTATTCGGTACGTTTTGGGGGCACAAGTCGAAGCAGCG
TGCTGCACTCCTCGCTTGAGCTCGTCGGTGGTCTGGCCACGACACGAACA
GGTTGTCGAAAAAACGTGCAGACTGCCGCTCGGGTGCCGCAGTGGAAGAA
CCAAATCCGCCCTTGCGGCAGGTGTTTTCGGTCCAGGTATTGCAGAATGC
CGAGCCGGTCCACGCACAACCTTGCCAGTAGATGCCCGCATCTACTACAG
TAGGCGCCACGCCGCCTTTTCAACTACATTGATTCGCCGATTCGTAGATT
AAGACGCCAGCATCAAACCAACCCGCATTTTACCCTGGGGACTGATGCAC
ACAACAAACAAGACTGGGAAAATACATTTCATTCGCCCGAGCAGGCTAAC
CGGGGCATGAAGGTGCAGAGCAGCCGGGGCGTTTCGTTGAGGTTGTTGTG
GAAGATGCCGAGCCTGGACCGCGTTTCTAAATTTCTCAAAAAAGTCAATC
CTGATTTCCTCAGTCAGTGTCTTCTTGATAGCGGGCCGGTATGTGTTGAC
GATTCAGACACATAACATACGTGTGCCGTAGCGTGGTGGTGTATCACCAG
GTCTGACGCTATCTACACCATATTTTGAGATGTACGTTTTGTGGTGTGCG
CTTTGTTTACTCTTTCACGAGGACGTGTATCATGTGTATTGACGGCACGC
CGCCTAGTTAAGGCTACGTGCTGGTTTGTTTCTTAGAGGAAGAACGGACA
AACCCGCGGGATCGCCTATACACCACTCTAGGGGGGTAAACCACCCCAAC
ATCTAACCTGAGGAAACCCCGGAATATACACTGGGAGCGTCCCGTTTTTG
GTTCTACGTACCTACATACGAAGTACATATTCTCGGCAACACAAAACGGC
CTTTGAGCGCGACAGAACGCGTCCAAATGAACCACTCTCCGGAGACGACG
TCTATACTAATAGCGCACGAGGATCACTTGTAAATTCGCCTTTGTATATC
TATGTCCGAGTCATCTCCGTAAATAAAAAGAAAACAACCATAAACATCCC
GCATCAAGTACCCCGGATCCTCTTCTGGACATTTTATTTTTGTAGGAAAG
AATGTTTAACGTCCGTCGCCCCGGTGGTTCAGTTGGTACACCACGTAACC
TTCTGACATTCACGCGTGAGTTCGAATTCCAGTGCAGTACAAGTAAGACG
ATCTGGGTTTTCTTCTCACAATGCGCGTGAAAGTGGAAAGCGATTAACTC
GTGAGTAAACCAAATTCGATCGTACCATCGACGAGGGATAGGGATTGCTG
TCCCCTTTCTCGCGATAAAAAGCTCAACCAAAACAAGGCAAGCACCGCAG
AGGGAAGTGGAAAAAAGAAAAAAAAGTAAAAAGAAAAAACTGTGTTGACT
TCCCCCAGTGTGACCCCAGTTGGAGCGTCGACCTACCCGAAAGGCGCAGA
GTGGTGTCCAATTAAAGGGATTACAACGCACGCACACACACACACACGTC
GCCGCCGAAATCTCGCTGCAGCCGAGGCCCACACCCACCAAACTTCCTGT
GCCTAAACTCAGCATACTGGAATGCACCCCATCATATTTTATCACAATGG
TGTCCCACGGGCCGAGTTCTGGTAGGCGCTGTTTCTTGTTGTGGCTCAAC
ATTGTCGTATATAGGGGGGGGGGGGTCTGTTGGTTCAGTGTGGGCAGGGG
GTCCAAAATCCACACCAAAACCCCTTGTGCCATAAAAATCGATCTCAGTG
GTAGGGTTCACGAGAAAAAACAATGAAAGTCTGAAAATTGCTGATAGTAT
TTAACCCTCACAGAAGATAGCTAAACAACACGTCTAGAAAGCACACACCC
TCTTCAACGTGCATGGTCTGAACCTTGCGATGTAAATGAGACATAGCAGC
AGCAGCAGCAGCAGCAGTGCAAAAAAAACACGACTAAATCACGCACTTAC
CACGCAATACATATTCGAAGTATTCAGCACAGCCACCAGTAAATACACAT
GGCATACTACAAGAGGTAGGCGCAATGCTACACCACACACCGAACATGAT
GTGATGAGCTTATCAGAGAGTAGATCTGGTCGTTTTGCAGACAAAAAACA
AAAACGATAATGCTCGACAGCAACTTGGGAGGATCGGTCAACGGCATGTG
CGTACATGAAGCATGCAGCATGATGCATGTACAGCGTATGTACAGCGGTA
TAATACAGACTCGGTTTGTTGTTGTGTTTGTGCGATCAGCAAAAAAAATA
AAAAATCACTTCTTGGCAGCAGTGGCAGCAGCAGCAGCGGCAGCCGCTCC
AAGAAGCATGACCTTCGCGCCCTCTTGAATCTTGGTGGCGCTTATCTTGT
CGCCGTCACGCAAAACGCCCTTGAACAGGAGTTTCTGCCGCAAGAACGGG
ACGCCGGTGATGGATTCCAGTCGTCGCTTGATGTCCAGCACGCTCACTTG
ATCGGGTACCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1891514..1898525-

>mRNA_P-littoralis_Contig1.438.7 ID=mRNA_P-littoralis_Contig1.438.7|Name=mRNA_P-littoralis_Contig1.438.7|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1:1891514..1898525- (Pylaiella littoralis U1_48)
ATGTGGACGGGTATGAGAACAGTGACTTCGTTCTCGACTCAGCCAGTGAA
GGAGTCGATCCTCTTGCGAAGCCGGCACGGTCTGTCGCTGCTACCGCAAA
AGCATGCAGGGGGTTGGTTGCAGGTGCCCGCCATGCCGCTCAGTACGGAC
GTTGAGCGCACCAAGCGTGGCGACATGTGGAGGGCGTTTGCGCGTGCCGA
GTGCTCGCAGCCTTTCGTGCGTTGCGTTCGACGGGGATACACCGGAGTGG
AAGACGGTCGTTCCTGCCAGCCATGGAAGAGGGAAGGAGCCCGCAGGCGC
CCACCTCCAAGAAGACGGCAGCATCCTTGA
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