mRNA_P-littoralis_Contig132.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.53.1
Unique NamemRNA_P-littoralis_Contig132.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.460e-23
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRGI 243
            MASTDRDAL ALYNAT+G  W    NWNT A LS WHG+ VNDQGRVV L ++ NNL+GI
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQGI 60          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.070e-22
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            MA TDRDAL ALY AT G NWR+  NW+TDADL  WHG+ VNDQGRVV+L +  NNL G
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.300e-21
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   52 VSATMASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            +S+TM  TDRDAL ALY+A  G NW+   NWN DADLS WHGI +NDQGRVV+++++ NNL+G
Sbjct:   47 ISSTMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQG 109          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.500e-21
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRGIL 246
            MA TDRDAL A+Y AT G  W    NW+TD+DL  WHG+ VNDQGRVV+L +  NNL G+L
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEGVL 61          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.480e-21
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            MASTDRD L ALYNAT+GANW+   NW TDADLS W G+ VN QGRVV+L++S NNLRG
Sbjct:    1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRG 59          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.180e-21
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 RILHLFRKLPPSLHSPQVSATMASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            R+ H + +   +  S   SA M STDRDAL ALY+ATDGANW+ K NWNTD  L  W G+  NDQGRVV L++  N L G
Sbjct:   88 RLHHEYNRASANCQSMPASAIM-STDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHG 166          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            MA TDRD L ALYNATDG NW+ K NW+T+ADLS WHG+  +DQGRVV+L++S N LRG
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRG 59          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.570e-20
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   64 MASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            MA TDRDAL  LY AT G NWR++ NW+TDADL  WHG+ VNDQGRVV+L +  NNL G
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: D7FM75_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-19
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   73 TDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRGIL 246
            +DRDAL +LYNAT GANW+QK NW+T ADLS W GI V+DQGRVV+LN+  NNL+GI+
Sbjct:   40 SDRDALVSLYNATGGANWKQKENWDTGADLSQWCGIKVDDQGRVVELNLFWNNLQGII 97          
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.710e-19
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   61 TMASTDRDALAALYNATDGANWRQKANWNTDADLSLWHGIAVNDQGRVVQLNISGNNLRG 240
            TMA  DR AL ALYNAT GA WR K NWNT A LS W+G+ V+ QGRVV L++ GNNL+G
Sbjct:  139 TMAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGRVVTLHLGGNNLQG 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX36_9PHAE8.460e-2368.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE5.070e-2267.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI2.300e-2161.90Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K3C2_9PHAE6.500e-2160.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI7.480e-2171.19LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T5_9PHAE9.180e-2153.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS5_ECTSI1.400e-2067.80LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LBY3_ECTSI6.570e-2066.10Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FM75_ECTSI2.300e-1968.97LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KDU0_9PHAE2.710e-1965.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:199389..199634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJV1
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,Roc
Model size246
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons1
Evalue1.23e-21
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
EC3.2.1.21
Cds size246
CAZyGH1
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.0987856-CDS-P-littoralis_Contig132:199388..1996341680789604.0987856-CDS-P-littoralis_Contig132:199388..199634Pylaiella littoralis U1_48CDSP-littoralis_Contig132 199389..199634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.53.1prot_P-littoralis_Contig132.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 199389..199634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.53.1

>prot_P-littoralis_Contig132.53.1 ID=prot_P-littoralis_Contig132.53.1|Name=mRNA_P-littoralis_Contig132.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
RILHLFRKLPPSLHSPQVSATMASTDRDALAALYNATDGANWRQKANWNT
DADLSLWHGIAVNDQGRVVQLNISGNNLRGIL
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mRNA from alignment at P-littoralis_Contig132:199389..199634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.53.1 ID=mRNA_P-littoralis_Contig132.53.1|Name=mRNA_P-littoralis_Contig132.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig132:199389..199634+ (Pylaiella littoralis U1_48)
CGTATTTTGCATTTGTTCCGCAAACTTCCGCCCTCTCTCCACTCCCCACA GGTGTCTGCTACAATGGCTTCTACCGACCGTGACGCACTGGCTGCCCTAT ACAACGCGACCGACGGGGCTAACTGGAGGCAAAAGGCAAACTGGAACACG GATGCCGACCTCTCGCTATGGCACGGCATCGCAGTCAACGACCAGGGTCG TGTGGTGCAGCTAAATATATCCGGCAACAACCTCCGAGGTATCCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:199389..199634+

>mRNA_P-littoralis_Contig132.53.1 ID=mRNA_P-littoralis_Contig132.53.1|Name=mRNA_P-littoralis_Contig132.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig132:199389..199634+ (Pylaiella littoralis U1_48)
CGTATTTTGCATTTGTTCCGCAAACTTCCGCCCTCTCTCCACTCCCCACA
GGTGTCTGCTACAATGGCTTCTACCGACCGTGACGCACTGGCTGCCCTAT
ACAACGCGACCGACGGGGCTAACTGGAGGCAAAAGGCAAACTGGAACACG
GATGCCGACCTCTCGCTATGGCACGGCATCGCAGTCAACGACCAGGGTCG
TGTGGTGCAGCTAAATATATCCGGCAACAACCTCCGAGGTATCCTA
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