mRNA_P-littoralis_Contig132.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.47.1
Unique NamemRNA_P-littoralis_Contig132.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig132.47.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   28 SGGSGGLVLGYFQEDDVREYEQIAENAWRHHVG 126
            SG SGGLVLG FQEDDVREYEQIAENAWRHHVG
Sbjct:  612 SGVSGGLVLGCFQEDDVREYEQIAENAWRHHVG 644
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUZ3_9PHAE5.490e-1293.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:184956..188382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.977764-CDS-P-littoralis_Contig132:184955..1850541680789603.977764-CDS-P-littoralis_Contig132:184955..185054Pylaiella littoralis U1_48CDSP-littoralis_Contig132 184956..185054 -
1680789603.9871428-CDS-P-littoralis_Contig132:188355..1883821680789603.9871428-CDS-P-littoralis_Contig132:188355..188382Pylaiella littoralis U1_48CDSP-littoralis_Contig132 188356..188382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.47.1prot_P-littoralis_Contig132.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 184956..188382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.47.1

>prot_P-littoralis_Contig132.47.1 ID=prot_P-littoralis_Contig132.47.1|Name=mRNA_P-littoralis_Contig132.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
MRCFHPGELSGGSGGLVLGYFQEDDVREYEQIAENAWRHHVG
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mRNA from alignment at P-littoralis_Contig132:184956..188382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.47.1 ID=mRNA_P-littoralis_Contig132.47.1|Name=mRNA_P-littoralis_Contig132.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3427bp|location=Sequence derived from alignment at P-littoralis_Contig132:184956..188382- (Pylaiella littoralis U1_48)
ATGCGGTGCTTTCACCCAGGTGAGTTGGTTTGTATTCAGGATGATTTCCC
CATAAGATAGAAGACGGCAAACTTGCAAAGCTAAATCGGTATGAGGCCTC
CCGCTCTCGGTAGGTCTCCACCTGTCATGGTTAACCCGGACAACCCCCTT
CCACCACCCCCAGGACAGGATTATCTCTTGTGGTACAGTGACGCTTCGGA
TAAGTGCTTGTCACCTTCATTTAGTATCCTTATACTGTATCCCAATAGCT
TGTGCAAATGAGGGCGATCCTTCGATAACGTTGTTCACACGTTATGTCAC
TGGGCAGGTGGGTCGATGAAGGATGTTGAGGGTGGGGCGTCGTTCGCCGG
GAAATGGACCAAGGAATTGATCGGTCCGCTCAACCACTCTGGGGTTGAGC
CAACCATCTACCTCACGATGTCCATCACGTCTCACAAGCACGCGTTCAGC
AGCATCCACGAGTTCACGGAGACAACTCGCCGCTGGGAACGCGGTGCCGA
TGGCGAACTCCACCAAATGCGATGGATACCTGATTTCAATCACTGGGTGC
TCATGTTGCCCCCGGCAAACGCAGGTGCCCTTCAGGTGAGCCAGACAGGA
CGCCGGGTGTCCGGACGCCGGGTGTGTTGTTGCTCATTGTGGGGCGCAAA
AGACGTACGGAGCTTTATGAAGTGTTCATTATTTTGACCCCTCGGCCGGT
GCGCTGTCTGCTCTTTGAAATTTTTCGCGGCCCCAAGATTGGCGAAGAGC
TGGCTTATTGGCAGAGAGCGAAGGAAGCGCCAGGTCGGGCATTTGTGTTG
GATGTGAAACGAGCGTTTCTGGTGGCGAAGAAGGCCGGGGCTAAGGGAGC
CACACCCGACGCCCCGGCGGTGCCGATGGAGGTGGACAAGGCGGCTGCGG
AAGAGCGAACTCGGTCCCTGTCAGCGACCCCGTTGGTGATGCTTTTTTCG
ATGTTGTCGTTCGTGGGGGGCGTGGCGACAAGGTTGCCGTTGCTGCTGCC
GTTGGCGGCAATGATGATGATATGGATGCCGCGTCTCTTGGGAGTTCAAG
GGAAGCTGGGCGCCGCCGAAAATGAGTGAATTGCCGAGGCGAGAGCTAGC
AGAGGTACCGAGGAGGAGGGAGCCCGAGCTATGGTAGTGGCGGGCTTGTC
GTCGAAGTTGTTGTTGCTGTTGTCAGCAACGGCGGACTCGGCGATGTTGC
ATAGCTTGGGGATAGCGCTCGAGCCAAATTCGCCATCGGCCCTCCAGGCC
CAATCGACATAGGAAGAAAATACGGCGAAGGATAAATGCGCTGCACAGGC
GCAAGGTGTGGCGAAGGAGGAAGCTAGCTCGGCGGCGAAGGCTGCGTCGA
AGGCGGGAGCTATGGGGCCGGGCGAAGCTTCGGTGTAGTGGGAAGCCGAT
CGGGGGTCGCGCCGGCGACAGAAGCGGGGCATCGCACGGCGGAACGCGGA
TGACGCGGTACGTATTCGGTGGAGGTGTCCTGTTTTGGTATGATGGTAAC
AGATGTCGAGTCGATTGCAGCGTTGACATATTTTTTATTACATCTCTGAC
GGTTTTTTTCCTCGCTGACGGTTCGGTGTGGAGGTGGGGCTGGCAGGTGT
TGTCCGTCGTATGTTTTATGCGCTTGTCCGACGTGCGTCACCTTTCATTG
TGTCACATGAACTTATGTTAATCCTGTATCGACACCCACCCGTCTGCATG
CCATCCTTGCTCAGGCCAAAGCAGCAGCAATTTTGACAAGCAGGGAAGCC
CAGAGGCGGAGGAGGCACGGAAAAAGCCTCACGAACCCTTGTGTAAGGAG
AAGCAGTGGCTGTTTGGGTTAGACAATCACACCCAGCTTGTCGGTGAGTG
GCAGGATTTCCTGAAGAATCGGCAGCACCGCGACGGCGTTTTTTCTGATT
TGTGCGAGTACATTCGTGGGAAGTTCGAAAGTATTCGCGCCAAAAAGTCC
AACAACACGGCTATTACACCGTGGGAGGATTGCCTGGGAAACTTAGGGTT
ACTAATTGACGGCGAGCCCGTCCTGTCTCAGGATTTTTTGGAGACGTTAC
ATTTTAAGTCGTGGCACAACGACGAAGACTGCTTGATAATTGGTGACGAG
GGCAACGGTATAGGAGAAGGCGAACTCCAGGCCCTACACCACGCCTACCT
CGTCGGTCGAACAGCGAGCCCGCTGACGGGGGAGGGTGGCGGTAGTAGCT
CCGAGAATACCCAGGAGGGACAAGGGGAAACACCACCTGTTCGGGTCGAG
GTAGTATCTATCGACACGGACGTTTGGGTAGCAGCCCTTCTCGCGTATGC
CCTTTACCCGCACATTCGAAGAGTTCGAGTGGTAGTGCGACAACAGAGTG
GGTTGAATGATCAAGGTGTCGTTAACTGCATCGACGTGCTTGAGCTTTTC
GAGGCCCTGGCCAAAATGTAGAATTGGCCGCATTCGTTCACCGATTTGCA
GAGGTGCTTGCCGGTGTTTGCCTCGTACATGCTCAACGGCACTGACTTCA
CTCCGACACTTTTCGGCTTGAGCTCTTTCTTCATGTTCCAGTCATACTTC
GAGTTAGCGAAGAATGCTGACCAGTTTGTCAAGGCCTTGGTCACCACAAT
AATAGAGGATGGGGTAATCACTGGTTTACATTTGGAGAGGCAAGAATTGG
TTAAGTTTGTTGCGCTCGCGTACTTTGTCAAGAACAAAAGTTTATTTGCT
AACGCTTTGCCGGGGTATGAAGTCACGGGAGATAAACAGGGAGGGGAGGT
TGATGATACGAGGAGGTGGGTCGAAGCGATTCAGGAGCGAACTGCTGAAA
AATGGTACGGTGCTGGGAACCTCAGCAAAGCCGCCCCGAACTACGATGAC
GCCGAACTTTGCGTCCTCCGGATGTCGTGGTTGGTAGAGTACTGGCTTTC
TGTTGTGCCGAGTGGTTCTCCGGGTTCGGACGCCTCCGCGAGGTACCCCA
TTGAAGTTCCCAAATGGGACGGGATGGGGTACAATGAGAAAACGGAGGTT
GAAGGTGGTTGTATGATGTTGATGCGCAGGTTCCCTAAGGTCACCATCTG
GCCGGGTGGATTTGAAACGGTGAAGTGCATGTGTTCAAGCACGAGGAGGA
AGCGAGGGGGGCACTGCACAAGTTGCGTGTGCATCACTAAAGGTTTTGGC
TATTGCTCAGAGTTGTGCAAGTGCAAGCTTAAATGCCGCGGGGAAGAGAC
GGAAGAAAGTGAGATGCAGGAAGATCGTTCAGCTGAAGGAGGACTAGTAG
ACATGGGCGAAGATAGTGACAGCGACAGCGACGAGGAAGTTGCCGGGTAT
GTTTGATTCCTCGAACAATAACGCCGAGTCGGGTGGTAGTGGCGGCTTGG
TTTTAGGTTATTTCCAGGAGGATGACGTTCGTGAGTACGAGCAGATAGCT
GAAAACGCGTGGCGGCATCATGTAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:184956..188382-

>mRNA_P-littoralis_Contig132.47.1 ID=mRNA_P-littoralis_Contig132.47.1|Name=mRNA_P-littoralis_Contig132.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig132:184956..188382- (Pylaiella littoralis U1_48)
ATGCGGTGCTTTCACCCAGGTGAGTTGTCGGGTGGTAGTGGCGGCTTGGT
TTTAGGTTATTTCCAGGAGGATGACGTTCGTGAGTACGAGCAGATAGCTG
AAAACGCGTGGCGGCATCATGTAGGA
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