mRNA_P-littoralis_Contig132.43.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 330 bits (847), Expect = 2.380e-111 Identity = 163/202 (80.69%), Postives = 170/202 (84.16%), Query Frame = 2
Query: 71 PTHAAGKDQQPSPGFRRRGRHRKPCRWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQEMSCGNGTRLVFCPE 676
P HA G+ P P R R WLDRYCTSPEA+DA LGAV ITGCVLDMC GPTDAVATRLRST E+LTNDVSSGRPADTNLDASLESFPEDFLAA SGKRPEWV TSPPY+ ALTFVKAAMSLATKGV FKM + FLEPCAD GGWL+TNPPS+CVFLRRAKYTRANNAK EFWGVWYTQEMSC N TRLVFCPE
Sbjct: 6 PRHAKGQRTAPEPQTHLRRR------WLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFCPE 201
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 279 bits (714), Expect = 6.190e-92 Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 2
Query: 230 MCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQEMSCGNGTRLVFCPE 676
MC GPTDAVATRLRST E+LTNDVSSGRPADTNL+ASLE FPEDFLAA SGKRPEWVVTSPPY+ ALTFVKAAMSLATKGVAFKMP+ FLEPCADRGGWL+TNPPSVCVFLRRAKYTRANNAK GEFWGVWY QEMSC N TRLVFCPE
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFCPE 149
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 258 bits (660), Expect = 1.540e-81 Identity = 131/210 (62.38%), Postives = 151/210 (71.90%), Query Frame = 2
Query: 53 RRRICLPTHAAGKDQQPSPGFRRRGRHRKPCRWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQEMSCGN--GTRLVFCPE 676
R+ +P H+ P P + R LDRYCT PEAV+ L AV I GCVLDMC GP DAVA RST EVLTNDVSS A TNLDASL SF ++F AN GK+P+WVVTSPPY A+ FVKAA+++ATKGVA K+PLSFLEPCADRGGWL NPP+VC+FLRRAKYT A++ K+GEFWGVWYT CG G+RLVFCPE
Sbjct: 99 RKAKQMPRHSRMWSAAPEPVTHDKRRR------LDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCPE 302
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 239 bits (611), Expect = 8.750e-75 Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 2
Query: 311 RPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQEMSCGNGTRLVFCPE 676
RPADTNLDASLESFPEDFLAA SGKRPEWVVTSPPY+ ALTFVKAAMSLATKGV FKMP+S LEPCADRGGWL+TNPPSVC+FLRRAKYTRANNAKMGEFWGVWYTQE+SC N TRLVFCPE
Sbjct: 135 RPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVFCPE 256
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 214 bits (546), Expect = 2.250e-65 Identity = 101/160 (63.12%), Postives = 125/160 (78.12%), Query Frame = 2
Query: 146 RWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWY 625
R +DRYCTSP ++ALLG V I+GCVLDMC G DAVA RLR T +VLTNDV TNLDAS SF +DFLAA+ G++P+W+VTSPPY AL FVKAA+++A KGVA K+PLSFLEPCADR GWL+ NPP++C+ + RA+Y A+ ++GEFWGVWY
Sbjct: 66 RCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAH-VRVGEFWGVWY 224
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 205 bits (522), Expect = 7.390e-62 Identity = 100/144 (69.44%), Postives = 117/144 (81.25%), Query Frame = 2
Query: 146 RWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSS-----GRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFL 562
R LDRYCTSPEAV+ALLGAV + GCVLDMC GP DA+ATRL +T +V+TND+S+ G P DTNLDASL SF DFL A G+RP+WV+TSPPY AL +VK+A+SLA KGVA K+PLSFLEPCADRGGWL+ NPP+VCVF
Sbjct: 78 RCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 197 bits (502), Expect = 7.230e-58 Identity = 111/206 (53.88%), Postives = 132/206 (64.08%), Query Frame = 2
Query: 74 THAAGKDQQPSPGFRRRGRHRKPCRWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSSG------RPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQ--EMSCGNGTRLVF 667
+ AA P P + RH LDRYCTS AV+ALL AV ++G VLDMC GP DAVA +LR T EV+TNDVSS R DT+LDAS +F +FLA ++PE VV SPPY A+ FVKAA+ +A GVA K LSFLEPC DR WL+ NPP+VCVFLRRA YT + MGEFWGVWY + + GT+LVF
Sbjct: 96 SEAATWTSAPEPAVHVKRRH------LDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYT-PEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 194 bits (493), Expect = 2.100e-57 Identity = 103/145 (71.03%), Postives = 112/145 (77.24%), Query Frame = 2
Query: 53 RRRICLPTHAAGKDQQPSPGFRRRGRHRKPCRWLDRYCTSPEAVDALLGAVGITGCVLDMCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMP 487
R+ P HA G P P H K RWLDRYCTSPEAV+ALLGAV ITGC+LD+C GPTDAVATRL T EVLTNDVSSGRPADTNLDASLESFP+DF AA+SGKRP+WVVTSP Y +ALTFVKAAMSLAT+GV P
Sbjct: 66 RKAAQTPRHATGMWTVPEPQT-----HLKR-RWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI) HSP 1 Score: 179 bits (454), Expect = 2.630e-53 Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 2
Query: 230 MCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWL 529
MC GPTDAVATRLRST E+LTNDVSSGRPADTNLDASLE FPE+FLAA SGKRPEWVV SPPY+ ALTFVKAAMSLATKGVAFKMP+ FLEPCADRGGWL
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 166 bits (421), Expect = 6.770e-48 Identity = 85/151 (56.29%), Postives = 101/151 (66.89%), Query Frame = 2
Query: 230 MCCGPTDAVATRLRSTSEVLTNDVSSGRPADTNLDASLESFPEDFLAANSGKRPEWVVTSPPYNNALTFVKAAMSLATKGVAFKMPLSFLEPCADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWYTQEMSCGN--GTRLVFCPE 676
MC GP DAVA T EVLTNDVSS A+ GK+P+WVVTSPPY A+ FVKA +++A KGVA ++PLSF +PCADRG WL NPP +C FLRRAKYT A++ K+GEFWGVWYT + CG G+RLVFCPE
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSR-----------------LSPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYT-DGGCGKSGGSRLVFCPE 133 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig132.43.1 >prot_P-littoralis_Contig132.43.1 ID=prot_P-littoralis_Contig132.43.1|Name=mRNA_P-littoralis_Contig132.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp MSATGTRCTACLKWRRRICLPTHAAGKDQQPSPGFRRRGRHRKPCRWLDRback to top mRNA from alignment at P-littoralis_Contig132:182500..184726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig132.43.1 ID=mRNA_P-littoralis_Contig132.43.1|Name=mRNA_P-littoralis_Contig132.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2227bp|location=Sequence derived from alignment at P-littoralis_Contig132:182500..184726+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig132:182500..184726+ >mRNA_P-littoralis_Contig132.43.1 ID=mRNA_P-littoralis_Contig132.43.1|Name=mRNA_P-littoralis_Contig132.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig132:182500..184726+ (Pylaiella littoralis U1_48)back to top |