prot_P-littoralis_Contig132.35.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig132.35.4
Unique Nameprot_P-littoralis_Contig132.35.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1863
Homology
BLAST of mRNA_P-littoralis_Contig132.35.4 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.310e-75
Identity = 509/1464 (34.77%), Postives = 593/1464 (40.51%), Query Frame = 0
Query:  492 LAKEPKTEYQEHIQMAKALSKSLVVPTTRXXXXXXXXXXXXXXXXQETDEELMRNPAAFRAKENRLVRALKDLDVKLERLNKERDAALRKLAAHRTLGARVSARAGGVSGEDS---CSGGPKTAEEVAKIVFPDEH------AGSGGGGGLP-RVTTTN-GPSTRSQARRPPAEKETXXXXXXXXXXXXXXXXXXXRGVPLDTAR--------RRKRHPEGQGCDSAFEGP--DGGAER-----------LIASARGGVPVSAEKDVRGGVDGDADGNRYRESGNDDVGDDHDAGXXXXXXXXXXXXXXXXXXCFGDGNRQSVSSARGSGKGKGGNTFWGIAKGADELSQSNFVTGVFADIRAKAKAKSTAATASSVAGRVKTHDAGRSGGRAVAAVTAAAYGDASLYNRRTRSTARPVAAASLPSSSDLGRGQGDADARSASAXXPXXXXXXXDEGVDRRRHENGSSSVKGTGSFDXXXXXXXXXXXXXDAIGAVDGAILLLSQTLSAGH-------QPCSTSTAREDEDGEEAEGDSETAGVADRHIARAPVAALSGLFPDWKENIRFVFQQGSADLREALQSIDTALSVEEAAFAAAA---------AADDRG-------CVLDGERGREEGVLVV-----------RGSERRPSGSNGGRS-SGGSKVEALLFFKSVIVDALELKGPVQEPSRNTRPPSTKEVEHEXXXXXXXXXXXXKSISSSCDSLQ------SEKNMRNGSSSCVIRCSGDSGGKAVGGPYPCSGTSSPRG---PGHAEERKQVEEDAERRRQEGTGSGADSQGGDARHAEDRVAEVRPP--------DCPTGEDSSSSRYPHEDAVVNVRSEDXXXXXXXXXXXXXXFAIVTNGAGEGXXXXXXXXXXXPNGGXXXXXXXXXXXXXXXXVVTL-----------------SNEDEVDKIGTDADGSDEYTMEAGDDFVDDHCCPWDGVDDDDNGVSMFPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSSALPPSEIHRTDAXXXXXXXXXXXGKASCGGASGMSTALLDLTQIALSASPXXXXXXLHLSRNGHFDDGGLAAVAAGHILSLH-GXXXXXXXXXXXXXTASSLEENEREEEGRGKRTRVGAGTEVGRGGTGCEDGVPEGMPSFGQMTLQELAGSMAAYGLKKKSKREMTARLEQIWKALHPAMV---VPAAAXXXXXXXLDAE--------RDASPTARVGDSNASSRSLSVSSNG--RSRGAXXXXXXXXXXXXXAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXATASTGLRGLTPLARPPRGSGRCCLLRKGVSQKTVGGAAXXXXXXXXXXXXXVPPLPSSSSLPSCRQQQERSVGGKCVGDEGLA--LGERIRAVITGFAPLHEDVLLLRTVELTATQVLLKDAGVKCSKKDLASYLDARGITFVDRGA---KRRGGGRE 1835
            +AK PKTEYQEH+QMA+ALSKSLV P                   +   +EL RNPAAFRAKE RLV  LKDLDVKLERL K+RD+ALRKLAAHRTLGAR+SA AGGV  E S     G PKTAEEV  I+F DEH      AG G G   P RV+T+      R+Q R       +                    G   D A         RR R    +G  +    P  DG +              +A ARG  P S +     G  G               GDD    XXXXX               G+G R S     GS + + G T W IA+GADELSQS+FVTGVFADIRA     ST        G+      GR      AAVTAAAYGDA LYNRR  S+A   AA+    SS L   QGD D        P                ENG S   G                      AVD  I LLSQTLS                                    A RHIARAPV++LSGLFP+WKEN+ FVF+QG+A+L+EALQ I TALS EE   A A          A + RG         L  ER R++G               RGSE    G NGG + + GS         SV      L+GP +  S       ++  E +             S++     L+      +E N  +   + V    GD+G ++VG  +P  G SS       G +     V  D          S   S  GD                      + P G D    R          R+   XXXXXXXXXXXXX           XXXXXX       G           XXXXXXV                    S ++  +  G   D  DEY +E    F D   C W     D+N +S  PS            XXXXXXXXXXXXXXXX              D             K S    S M   LLDLTQ+A   SP        L R     D   A    G   S H G             T SS       EEG    T VG   ++          + E MPSFGQMTLQELAG MA YGLKKKSKREMT RLE IWK LHPA     + AA     XXX            RDA      GD +A    LS SS G  RSRGA                                            T+S                                   XXXXXXXXXXXXX                    +     G  G+   LGERIR+VI G+APLHED+LLL+TV+L+A   L+K+AGVKC+KKDLASYLD+RGITF+DRG    + RGG RE
Sbjct:  301 VAKTPKTEYQEHMQMARALSKSLVAPKATAVQDEASE--------EVCTKELARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKLAAHRTLGARLSAGAGGVPSESSGXXXXGAPKTAEEVVDIIFADEHGAAAAAAGIGSGARTPLRVSTSRLSEEGRAQQRGATLLSSSPSSSSPVSLLSKGTAVADAAGGGSDAASGERPTTVPRRSRRERAKGTPAPLPAPEEDGASXXXXXXXXXXXXXFVAGARG-TPPSGDNPRYDGDKG-------------CWGDDXXXXXXXXXGVGRLIRRRSGGGANGNGQR-STPGGDGS-RARRGRTLWAIAQGADELSQSDFVTGVFADIRAN----STGGVGGGAGGKPHAAKPGRR-----AAVTAAAYGDARLYNRRVVSSA---AASPSALSSTLCSDQGDTD-EGMGGGRPGKSEREQSASQLNPSDENGGSGXDGDD--------------------AVDDVIQLLSQTLSQASVSGXXXXXXXXXXXXXXXXXXXXXXXXXXAERFAARHIARAPVSSLSGLFPNWKENVGFVFRQGAAELQEALQGIVTALSEEEEKEAEALVFFEGVILEALEARGPACSRQLAFLGEERRRDDGSHSPGFEVGSPQTWRRGSEGVGIGRNGGGAVTPGSDSPPRGGANSVQDSGFALEGPEERGSERYDGGGSENGEGQARVDGESGDHL--SVADEATGLEETHATTAENNGHDAEPAAVGTDDGDAGTQSVG--HPHHGDSSVEAIVLSGDSTASAVVTFDLT----SSESSKRCSSAGDIXXXXXXXXXXXXXXXXAAGLAEFPVGADGGG-RNSGRGVTARARNGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRKSHRGVTASVRNCQRKXXXXXXVXXXXXXXXXXXXXXGANGPDSTDERGEASGDSDDVVDEYALEDEYGFDDHDYCAW----GDENDLSFVPSPDIDGVADERQPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAD-------------KVSHDSTSAMGAELLDLTQVAPLPSPS-------LRRCRESLDAAAATSPIGRGRSQHRGLESPATARRRHHCTPSSPPVEG--EEGASSPTAVGGNEDIAE--------LREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPAAAEEGMSAAGDGNAXXXXXXXXXXXXXXXRDAPSRDSGGDPSAY---LSASSQGHRRSRGAAEARP---------------------------------------TSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFLAENSSGRNGVDADLGERIRSVIMGYAPLHEDILLLKTVDLSAIHTLIKNAGVKCTKKDLASYLDSRGITFIDRGGVKRRARGGERE 1622          
BLAST of mRNA_P-littoralis_Contig132.35.4 vs. uniprot
Match: D8LCH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 7.310e-44
Identity = 242/666 (36.34%), Postives = 277/666 (41.59%), Query Frame = 0
Query:  460 SSAVGGGGGVSERG--LGGAGSLGGAPLDRRAPALAKEPKTEYQEHIQMAKALSKSLVVPTTRXXXXXXXXXXXXXXXXQETDEELMRNPAAFRAKENRLVRALKDLDVKLERLNKERDAALRKLAAHRTLGARVSARAGGVSGEDSCSGGPKTAEEVAKIVFPDEHAGSGGGGGLPRVTTTNGPSTRSQARRPPAEKETXXXXXXXXXXXXXXXXXXXRGVPLDTARRRKRHPEGQGCDSAFEGPDGGAERLIASAR-GGVPVSAEKDVRGGVDGDADGNRYRESGNDDVGDDHDAGXXXXXXXXXXXXXXXXXXCFGDGNRQSVSSARGSGKGKGGNTFWGIAKGADELSQSNFVTGVFADIRAKAKAKSTAATASSVAGRVKTHDAGRSGGRAVAAVTAAAYGDASLYNRRTRSTARPVAAASLPSSSDLGRGQGDADARSASAXXPXXXXXXXDEGVDRRRHE----NGSSSVKGTGSFDXXXXXXXXXXXXXDAIGAVDGAILLLSQTLSAGHQPCSTSTAREDEDGEEAEG---DSETAGVADRHIARAPVAALSGLFPDWKENIRFVFQQGSADLREALQSIDTALSVEEAAFAAAAAADDRGCVLDGERGREEGVLVVRGSERRPSGSNGGRSSGGSKVEALLFFKSVIVDALELKGP 1115
            SSAVGGGG  S RG   G  GS  G    R +  +AK PKTEYQEH+QMA+ALSKSLV P                   + ++EEL RNPAAFRAKE RLV  LKDLDVKLERL K+RD+ALRK    R        R                                                              XXXXXXXXXXXXXXXXXXX                                RL      GG   + ++   GG     DG+R R                                                     G T W IA+GADELSQSNFVTGVFADI    KA S  +      G+ +    GR      AAVTAAAYGDA LYNRR  S+A   A+A L S+    RG  DA  RSA A            G   R       N S    G G                D   AVD AI LLSQTLS         TA   + G+E  G   + E    A RHIARAPV+ALSGLFP+WKEN+ FVF+QG+A+LR ALQ I  ALS                                 G E RPSG    R S   K EAL+FF+ V+++ALEL+GP
Sbjct:    5 SSAVGGGG-ASARGEEAGARGSGDGLSARRSSTEVAKTPKTEYQEHMQMARALSKSLVAPKATAVQD------------EASEEELARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKRGTQRE-------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLXXXXXXGGANDNGQRSTPGG-----DGSRVRR----------------------------------------------------GRTLWAIAQGADELSQSNFVTGVFADI----KANSIGSVGGGAGGKPQAAKPGRR-----AAVTAAAYGDARLYNRRVGSSAAASASA-LSSTLCSNRGGIDAATRSADAADTDKGMGGGRPGKSEREQSVSQLNPSDENGGGGG---------------DGNDAVDDAIQLLSQTLSQASVSGRGGTASAQDGGQENSGKKQEEEAERSAARHIARAPVSALSGLFPNWKENVIFVFRQGAAELRLALQGIVAALSE-----------XXXXXXXXXXXXXXXXXXXXAGPEGRPSGVR--RRS--RKAEALVFFEGVVLEALELRGP 553          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.35.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H1_9PHAE3.310e-7534.77Structure-specific endonuclease subunit SLX4 n=1 T... [more]
D8LCH0_ECTSI7.310e-4436.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 554..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 601..764
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1197..1218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 670..695
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1227..1242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 971..995
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1329..1343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1616..1638
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 771..790
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1116..1159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1494..1529
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1826..1862
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1506..1528
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1141..1159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 633..647
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1612..1664
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1125..1140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1184..1474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 877..949
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 726..752
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1265..1282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1826..1843

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:130403..140493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.35.4mRNA_P-littoralis_Contig132.35.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig132 130314..140602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig132.35.4 ID=prot_P-littoralis_Contig132.35.4|Name=mRNA_P-littoralis_Contig132.35.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1863bp
MLTGAKSRKRSRLALPRQKGARTTPNGSIVRASAAKEDVVATAVNNGGPV
SSTSSPPAGADGTFGARASSVVGASSASTCSPSTPAFTAAAAVLSSNGDV
QPATTAASSLPGFYTTATDSGLGEGYRPVTTAFKDQENVTKESKGKGEKQ
MEESHVRDSASNKRPREPLQAVQLSACPEGAAVGAGKDNTQDTSVAAIVA
AAASEVMLILGSLGQNGNSDCHGGGGGGTELQAPPPPIEPNSGENTGSQD
TAGTICRTTRAPSDLQQQQQQPACSKRPKPGNTTTSSPNRLVSLSHSRAP
TPPLPSPIQGIAQVLPPHPTAGRSSSSSSSSSKSINGTPSQAAAMTTAAT
AASAPRPTPLPPAVEVVLLDDDGDTEPPVQMKPRKSGESGSGENGAAIID
GRPPASSFLSKKDRASSSSSSSSEQRERCPVCSCAVWGLDFRARQVHINS
CLDGTTGPASSAVGGGGGVSERGLGGAGSLGGAPLDRRAPALAKEPKTEY
QEHIQMAKALSKSLVVPTTRAAAVVVAAAAAAAATDQETDEELMRNPAAF
RAKENRLVRALKDLDVKLERLNKERDAALRKLAAHRTLGARVSARAGGVS
GEDSCSGGPKTAEEVAKIVFPDEHAGSGGGGGLPRVTTTNGPSTRSQARR
PPAEKETSTGATATAADGDGDGDADARGVPLDTARRRKRHPEGQGCDSAF
EGPDGGAERLIASARGGVPVSAEKDVRGGVDGDADGNRYRESGNDDVGDD
HDAGGAGGAARLVRRRSSGGGGCFGDGNRQSVSSARGSGKGKGGNTFWGI
AKGADELSQSNFVTGVFADIRAKAKAKSTAATASSVAGRVKTHDAGRSGG
RAVAAVTAAAYGDASLYNRRTRSTARPVAAASLPSSSDLGRGQGDADARS
ASAAAPPAATAAADEGVDRRRHENGSSSVKGTGSFDDDNEDSVVGGEDDD
AIGAVDGAILLLSQTLSAGHQPCSTSTAREDEDGEEAEGDSETAGVADRH
IARAPVAALSGLFPDWKENIRFVFQQGSADLREALQSIDTALSVEEAAFA
AAAAADDRGCVLDGERGREEGVLVVRGSERRPSGSNGGRSSGGSKVEALL
FFKSVIVDALELKGPVQEPSRNTRPPSTKEVEHEDENRNSSSSGSGKSIS
SSCDSLQSEKNMRNGSSSCVIRCSGDSGGKAVGGPYPCSGTSSPRGPGHA
EERKQVEEDAERRRQEGTGSGADSQGGDARHAEDRVAEVRPPDCPTGEDS
SSSRYPHEDAVVNVRSEDDEEEDEEEEKEDDDFAIVTNGAGEGEEDEDTD
FAIVPNGGGGGGGGGSGGGGGSEEVVTLSNEDEVDKIGTDADGSDEYTME
AGDDFVDDHCCPWDGVDDDDNGVSMFPSPDPDDAAAAAATATDEEFELPS
PPPSPTQRSSALPPSEIHRTDADADADAGAGAGGKASCGGASGMSTALLD
LTQIALSASPPPPPPPLHLSRNGHFDDGGLAAVAAGHILSLHGGGESSAV
RRNNHRTASSLEENEREEEGRGKRTRVGAGTEVGRGGTGCEDGVPEGMPS
FGQMTLQELAGSMAAYGLKKKSKREMTARLEQIWKALHPAMVVPAAAAAA
AAAALDAERDASPTARVGDSNASSRSLSVSSNGRSRGAAASSRHRGGAGD
GAPPPLSASSPGRRAGAASRVVAAAAAAAATATASTGLRGLTPLARPPRG
SGRCCLLRKGVSQKTVGGAAGAHDEEEEEVETLVPPLPSSSSLPSCRQQQ
ERSVGGKCVGDEGLALGERIRAVITGFAPLHEDVLLLRTVELTATQVLLK
DAGVKCSKKDLASYLDARGITFVDRGAKRRGGGREDGGKAPRNKKTRPGG
GSLSAAQTQACS*
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