mRNA_P-littoralis_Contig132.32.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.32.2
Unique NamemRNA_P-littoralis_Contig132.32.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig132.32.2 vs. uniprot
Match: D8LCH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCH1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.980e-16
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:   53 MESECRVFAAESFKCLESYGTNRAKAKDECAPFFDSYKDCLKRESDAAK 199
            MESECR FAAESFKC+ES+GT+R KAK+ C PFF+ YK+CL+RESDA K
Sbjct:    1 MESECREFAAESFKCMESFGTDREKAKNACGPFFERYKECLQRESDALK 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.32.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCH1_ECTSI4.980e-1673.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:124036..130024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1443
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionCysteine alpha-hairpin motif superfamily
Ec32 orthologEc-26_005030.1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.5244005-UTR-P-littoralis_Contig132:124035..1240721680789603.5244005-UTR-P-littoralis_Contig132:124035..124072Pylaiella littoralis U1_48UTRP-littoralis_Contig132 124036..124072 +
1680789603.563941-UTR-P-littoralis_Contig132:128984..1300241680789603.563941-UTR-P-littoralis_Contig132:128984..130024Pylaiella littoralis U1_48UTRP-littoralis_Contig132 128985..130024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.536202-CDS-P-littoralis_Contig132:124072..1241681680789603.536202-CDS-P-littoralis_Contig132:124072..124168Pylaiella littoralis U1_48CDSP-littoralis_Contig132 124073..124168 +
1680789603.5461264-CDS-P-littoralis_Contig132:127644..1277121680789603.5461264-CDS-P-littoralis_Contig132:127644..127712Pylaiella littoralis U1_48CDSP-littoralis_Contig132 127645..127712 +
1680789603.5549295-CDS-P-littoralis_Contig132:128782..1289841680789603.5549295-CDS-P-littoralis_Contig132:128782..128984Pylaiella littoralis U1_48CDSP-littoralis_Contig132 128783..128984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.32.2prot_P-littoralis_Contig132.32.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 124073..128984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.32.2

>prot_P-littoralis_Contig132.32.2 ID=prot_P-littoralis_Contig132.32.2|Name=mRNA_P-littoralis_Contig132.32.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MTASKMESECRVFAAESFKCLESYGTNRAKAKDECAPFFDSYKDCLKRES
DAAKNFFIFRYSPARERGEGGGGGLSNLSPCWCVVDRPRNIDEGGGEQAR
HWFAWQMRHHNVYRAVCILRV*
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mRNA from alignment at P-littoralis_Contig132:124036..130024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.32.2 ID=mRNA_P-littoralis_Contig132.32.2|Name=mRNA_P-littoralis_Contig132.32.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5989bp|location=Sequence derived from alignment at P-littoralis_Contig132:124036..130024+ (Pylaiella littoralis U1_48)
CAAGTACCTGCGAGGGAGACGCCAGGAGAGCACCAAGATGACGGCGAGCA
AGATGGAATCAGAGTGCAGAGTGTTCGCCGCGGAAAGCTTCAAATGTCTA
GAAAGCTACGGCACGAATCGAGCTAAGGCGAAGGTGATTTACGACGGACC
CTGCACATCAGCATTATTACACGTACAGCAGTAGACCCGCGGATGTTTCC
TTCCCCACGCTGAGAGGAGGCAACAGCTTCCATCGTCAGCAGCAGGTTCC
TTCCACACCACAGCAGATAACATCGCAGGAACGCCCATCTATTTGAATTA
TTGATTGATAGCGGAATGCTAGTTTTTTTACCGTTTGCCTACGTCCACTG
CACCAAACTTTTTTCTTTACAAACTCCTCGCTACCGTCTAACATGTGCTG
TCGATTGCTCTGACTTGCACTTCCTTCCAGTTGCATCATATCATGTTGAA
TTCATCCTTCAAAATTCACGGCTGCGCGTTGAGTAAATATGATGCCTTTT
GTTTCATAGGATGCTACGCCAGCACCTTACCGGGACCGCGGGCCACCTAC
AGGAATACTACTACTCCTCTGGTATGACACTGCCTAAAGAAGACACAAAT
CTATCGCTATTGCTTCGTGTATGTAAAATACTGGTACGAGTACATGTGTG
CATTAAAAGATGGGTATTATCGTATCGTTAAAAATGACATGGAGCACGAA
GTATATCTTTTCGTATCGGATGTATCGTGTTCGTACCGAAAATCATATCA
TGCGACGATACGATGTATCTACCGATAAATGATAAACGATACGATACACG
ATACGATACGATAATGCCTGCCCCCCTCATCCTTCCGTGGGGCCCAGTAA
CACAACACACAGCACCGCAGCACACAGAGCACACCACGCAGACACACAGC
ATCAGACACAATGCCACTACCTGGTACATCGCTAGACAGCACCCACCACA
CAAACACCCAGCAGCAGGACGACCTCCTACTGGCCGAGCCTCGCGAAAGT
CCCCTGTATCGTGGCTACCTTGAACGCCCACGTCGAGACAGAGGCGGCGG
CCTTCGACGAAAGGTCCGTTCGCCGCAGCACGGCAGGCGACGAGATGATC
CCCGACCACGCCGACCGCTGGGATGACCTGCCGGACGTGATTAAAAGGTA
GCCGCCGCACTCCACCCACTCACGAAAGGGCGAGCCTGGATAGACGCAGC
GGAACGAGCGAGATGGCGGGCGCTCCTCGTGGCCGACCTGAAGCTCTTGT
TCGCCGGGGATATCAGGGCCGAGCAGGCGCACCTGGGGCGGGCGATGGAG
GCACAGGGCACTGGCGGTGGTGGTAGCTCGGGATCGGCCGGTGGGTCCGG
TGATGCCGCCCCTCCCCCGAAGAGGCAGAGAAAGAAGGTTTTGTGGCGAG
AGCTGTATCACTTGCGAAGGTCATGGGTCCGGGGGATGGGATCAACGGCG
TTCGATCGACCCCACCAACCTCACGAAAGCGCTGGTGCTCGCCCCCCCCC
CCTTCGAGGCTCTCGCTCTTGGCAAGGGTGCAGGCGGCCGAGAGTGAGCT
TGCGCGCTTTTTTTTTAACTCGAAGATGCGCTTGTCGACGAGGTTGACGA
GGTTGAGGAGGATGGCGATGCTATTCAGGTTCGCCGGCGAGAAGACGAGC
TGGGCTGGTGTGTGCCGGCGCCAGTTCGCATTTCCGTGCCTGGCGAGGCT
GGCCACAAAGTACCTGGCCATTCCCCTGTCATCGGCGGCGTCCCGGCGCA
TCTTCTCCGCGGCCGGCGGCATCGTCACCACCACGGAGCGCAGCAGCCGC
GTACCAGGGGATAATGCAATCGATGTGGTTGTTTTCCTAAACGGCTCGCA
CGGGGTAGCGTGGTACAGCGGGGTTCCCCAGGAAGCCCTCGGCCGGAAGC
AGCGTTTTTTTTTTTTTCGCTGCTGGTGTAGCAGGTAGCCATCCGGCTTG
GTGTAGTTGCTGTTGCTGGTCGATTTTATATTTGCGGAGCTTGTAGTCTT
CGCTAATTATCACGACTTGTGATTGTCCGTCATTCGCTGAGTAGGACAAA
TAATATAGTACGGCACGACCACGCGGACGTTCGTGTACGCACGCGTTGGT
CCGGGTGCGAGAGTGGGTCGAGTGGATGAGAGGGTGGTGGTCTATGCCAG
TGTTGGCGATGTTATGAACGAAAAGGTCGGCACATTTGTCATCGTACAAG
GCGTCAACACCACGGTGATAGTTATGTTCGTTTTATGATGTGGTACCACG
TTTTTTCCCCACGGCATCGGTACCAGAAGGGCTGCATTCCTCTTCTCCTT
CATCCTCGTACCAGTCCCACACCCTCCTTTTGTAAGGGTACTCGTTAGTG
GCAGTGAACATTGGGCATGGGTTCGCGGAGCCCCCTCCACACACACCGGT
GGGCACCACGACACAATACAGCTGCGACTTTCATTAGTTTTTTTGCGTGT
TTTACGAAACGCGCGTATTGGGGTTGAGTAGTGTAACAGTACGCAGTTTA
CTAGCAGGACGAAGTAAATATCGAGGTTTGAGGGAGTCCCTCGCAACGCC
AAAAGTGCGTTCAATATTGTTTCTGCTCGTGATTGTAGATTTCAGTGTGA
AAGGCCGGCCATATCAGTGAGGATTTTCTGGGATTTTCAAGGAAAATTAA
ATGCATACACACGCACAAACGTCATTACTAGGCCATGATGACCCCACACC
CCCCCGCCTCTCCCCTCCACTTGAACCCTGTTAAAAGCCATCCCAACCAC
ACGCACAATTTTGTCGAAAAAAAATCCATTAAAGTGTAACCCCCACCCCC
CCCCCCCTCAGCCGCAGCCGACACAGCTTCTCCGCGCATGTTTTTGTGCA
CTAGTGACCCCCCTTTCCTCTCACGTGCATTAATCACGTTCGACCGCCCC
TCGCTTGGAGCTGCCTGCTCATGCTCACACACCATTTGCCACGAAAAAAA
GTTTTCAGTTTTGAACGCCACGTTTTCGTTTTTCCCACTGCTGTATTTTG
ATTTCATACGTAGCTTCAACATCAATGTTTGCGTCGTATGATACATTACA
TAAGATATAAAAGAGCCGATTTTTTTTTAGGTTTTCACAGCTGTCTGTTC
GAAATCAATCCTTGCCGTCTCAATCCTTGCATGTTCAGCAGCAGTATCCA
AAAATCACGAGTGATACTTTCTTCTACAAGCACAGCTTTGGTGATTTTCT
CTAGAATCACGTGCAACCGCCGTATCATACCCTTCCGGTATGTTGGCGAT
GGTTTGGACCGTATGCGGCTCGCGTGTAATACTCGTGCGGCAGATCAATC
CCTCGCCCTTTCGCCGCTGTCGTACGGGACCGCGGCTGCCGCAACACCAC
TCGTAGTATATGTTTTCGCTTTCTTGACAGCAACACCACCACTACAACAC
TCGTCTGTTTTTTCGGAAAAATCTTACTTGCCCCCCAACCCCTCTCGCTC
TCTGTTCTGTTGTTGGTGATTTCTTGTTTTCTGTTGGCAACTTCGCGTGT
TCGCTGCCCGTTTTTGTCTCCGTTTTTTATTTTTGTTGTTTGCCTCGCTT
TTTGGTGGGGTTGCCTCCTCCCCCGCCCCCCTCCCCATGCATAATACTTG
CATTTACAGGACGAGTGCGCACCATTCTTTGACAGCTACAAAGACTGCTT
GAAGCGAGAATCTGACGCAGCAAAGAAGGTATGGTAACACGTCCTAATTG
TGATTTCATGTGGAACATGTTGCATTTATTCCTTTTGAACGAGGTTCTGC
TGTTCCAAGGCATTTTCTACGTCAAATGACAATTTTTGATTGCTTAATAA
TATGCCACGCCTTTTTTCTTTTTTTGTGCACTCGAAATCATCCAACGAGG
TTGGCACTACAGTATTATTTCAGCGCGGATCAAGGGAGCTCTCGAAGCGC
AGTGAATTTTCGCGGTCTCGTCTTTTTCAGGGGCATCTCTCGAATCACTG
TCTCATCACTCGATTACGCCGCCAGAGAGTTGGCGAGATTTGCGTCGTGC
GGATAATAGGTCGTAGCTTCCGTTCTTCACGAAGCGGTTCGTGTCGGTTG
AAACTACTTTTTTGTACACCCGAAGCATGATATATCTGTAGGTAAGTGAG
GGCACCAGCGGGGGGATAACGCTGCTGCTGCCGCTGCTGCTGCTGTTGCT
GCTCCCGCAGAAAGTGTTGATGCCACCTGATCTAACTGACTGTCGTGCAC
CTCCCCCTTTTGCCCCATTTCCATCATTCGGACCATCTTCTCCTGATATG
ACCGCGTGCTTCAAAGTCAACTTCAAAGCGCTGCTTTCACCCACCACTGC
AGTACATGATAGTCCTACACAGGACTCTCAATGAGTCCACGATTTCATTA
ATCAATCTCTTCTTAAAAACTCTTTTCTTGTCCCATTTTTTTATTTTTTT
CTTCCTTCGCCTCCCCACTTTTTTTCCTTCCGTTTTCGTGTTCACCCTCC
CCCCACTGCCTACTTACTTATTACCTGTGCGCGCGTCTGGCTCTTGATGA
AAATCAAACACGCATCCGGAAGGCACAACGGGAGGGTCCACCGCGAAGGT
TCTTTGGTTGAATGAAGATTTGCGAGCGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAC
AGCCTACTGCTGTGGGCAGGCAAAAGTTAAGACGCATGGTGGAATAGGTA
ATAATACCCTGGTGAATAGCCCCGGCTTCAACTGAATCCCGCTCCTGTTT
TTTTATTTTTCGGTATTCCCCCGCGCGCGAGCGAGGCGAGGGGGGAGGAG
GGGGGCTCAGTAATCTCTCCCCGTGTTGGTGTGTGGTAGACCGCCCAAGG
AACATTGACGAAGGGGGAGGAGAGCAGGCAAGGCATTGGTTCGCGTGGCA
GATGAGACACCACAACGTGTACCGCGCCGTATGCATACTCCGAGTATAAA
GTATCGTGCCTTCAGACAGGAGGAGCATTGGTTCACTGACAGCTTTGCAT
GTCTTTGTCGGAGCGAGACACACACGTCTGCTGTGCACATCAAATCTTTT
TCCGTCTTTTGGAAAAAAAATGGTTCAAGGGTAGCAAGCATAGAGCTGCC
CAGCTTTAAATGGTTTGAACTACAGCAGTAGGGTAGGCTGGAATTCAAAG
CACGGTCAGGACGGGACGGGTTTTTTTTCTACTGTAGTGCAGCGTCACGT
TTGTTTTTGCCCGGTCCCGCTGCACCCACGATATCCTGGAGCGCTTGCGG
GGATGGTGGGGGGCGTGCTCGGGAGAAGTACACCACACACACCACTTGCA
GTAACCTCTCTCTCTATCGATGTCGTGTTTAGAGAGATTGGTATGATACG
CCGATGACGCAACTGCTGGGCCGCCGAATGGAGGTCAGGTATTGACACTT
GTACGGTATTCTACTACAGCAGTAGTTTGAAACTTCAGATTTTACTCTAT
GGTGCCAAAGAAAAGAATATACTTGTGTACCTGGTGCGAAGTGACAAAGA
TCAGCAAAACACGGCGAGAAAAAAAAAAAAAAAATCAGCCACCCGCGGCG
GGACTCAGCGGGATATGTTTGATGACTTTCTTTTTTTAGTATTTGTGCGT
GTTTTTGGATGGCGGAGACTTTTTGCGGCCGACGGTATCTGGCCGGTGCC
GGTACTGGCAGTAGGAATACAAACCAACCGCGTGTACAAAAGTACCGGTT
TTGGTTTTTCAGGGGAAGTGGTTTCGGTACTGTCGAAAGGACAACACAAC
CGACGGGGAGCACGAGGCTTGAGAACCGCTCACACGACACGAACGGGCCA
GCTGTTGTTGTTGCCACCCGCGGGTTTTGAATACTCACGGCTTGATTGCA
CTCGCTTCCCGTGCGTCTATGTGTGTGGGTGCACGTTTGTGCACGTGTGT
GCATGCATATGCATTGAGCCCGCCTCCACACACCGACAACTTGCTTTTCA
ATGGAGAATTTCGTGACTTTGATGAAACAAGCCTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:124036..130024+

>mRNA_P-littoralis_Contig132.32.2 ID=mRNA_P-littoralis_Contig132.32.2|Name=mRNA_P-littoralis_Contig132.32.2|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig132:124036..130024+ (Pylaiella littoralis U1_48)
ATGACGGCGAGCAAGATGGAATCAGAGTGCAGAGTGTTCGCCGCGGAAAG
CTTCAAATGTCTAGAAAGCTACGGCACGAATCGAGCTAAGGCGAAGGACG
AGTGCGCACCATTCTTTGACAGCTACAAAGACTGCTTGAAGCGAGAATCT
GACGCAGCAAAGAATTTTTTTATTTTTCGGTATTCCCCCGCGCGCGAGCG
AGGCGAGGGGGGAGGAGGGGGGCTCAGTAATCTCTCCCCGTGTTGGTGTG
TGGTAGACCGCCCAAGGAACATTGACGAAGGGGGAGGAGAGCAGGCAAGG
CATTGGTTCGCGTGGCAGATGAGACACCACAACGTGTACCGCGCCGTATG
CATACTCCGAGTATAA
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