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Homology
BLAST of mRNA_P-littoralis_Contig132.26.2 vs. uniprot
Match: D7FX96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX96_ECTSI) HSP 1 Score: 243 bits (619), Expect = 3.230e-64 Identity = 314/752 (41.76%), Postives = 365/752 (48.54%), Query Frame = 1
Query: 67 MSNDIHTGDNHADDFDLFWGM-------GPTSENRRMHSSN----VAEISTSSAPSNSGSTLSXXXXXXXXXXXLNTTTATLMGSLWSHGGAPHLEAYGHRHHAHASQGDGLQHVHSVGGSTPSPVRSRRPVWLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPANARLVDLKSSXXXXXXXXXXTSSDVACKLEELAAVITSSVLGKVDAGVREALSTSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTREXXXXXXXXXXXXVGFGRAXXXGSAAEVEPLLALNALAQRTGTLEGRHRQVQAKVALLDNYFGPKASDWAQTIKTFLLER--EASGGAPRGAGNVAAVNSTAXXXXXXXXXKKLAVDAPVFSPRAARTGYGNGGAGGAPREGGAAAVPTGPPSVPL------------VDVGGTKHDKSAPE------GNDDAVENTTTSATAASMVTAGVGRAGRVVDRCAACAETQERSSRLEKRVADSEETLALLQSKAPNTTSVATTAAVDAVKAWMATEISRRDAAAGKAVSPSGSLGRQQKALATSGXXXXGNWASKASLEKLAGELRQLSERMNDGDDAMAFVDHGLKGVRDEMLPLSVSVSALKRLVETQLREKELAAELLKGYVTTITREVATTTRHYINGLVSPAKLSTA 2229
M+ ++ GD ADDFDLFWGM G +S + H S + ++++ A S TLS LNT T TLMGSLWSH P EAYGH H HASQ +G P+P + L XXXXXXXXXXXXXXXXXX PA V + S V KLEELAAVIT+SV+GK++ VREAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ XXXG+AA EP+ AL ALAQRTGTLEGRH+Q+QAKVALLDN FGPKASDWAQTIK FL ER E + GA AG A T + L +DAP F P++A A R A VDV G KH++SAPE G+ A + T + AA+ A G+ + RCA CAETQER SRLEKRVA+SE L+LLQS+A XXXX NWASK S+EKLA LRQL+ R DG+DA+A VDHGL+GVR+EM PLS SV LKRLVE+QLREK+ AAELLKGYVTTITREVA +R YI GL+ P ++ A
Sbjct: 1 MNEGLNGGDP-ADDFDLFWGMPRSGGGDGGSSGSGINHESRGGGGLTDVTSGGAGLMSSPTLSGSSSRAGN---LNTATPTLMGSLWSHSSMP-PEAYGHSLHVHASQAEG-----------PAPTAAGLNADLHGGSPXXXXXXXXXXXXXXXXXXHQHSAGRGDGMHVSSRQRQQHLPATSPPRQ----------PARPTAVTDARGRGRNGGETGVSGSIVEYKLEELAAVITASVVGKLEVDVREALWAGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAVEATVAPLRSRLAALEEQMIRLSAASRSGSGSSGDGG--------RDTPRGVRGNSSGSXXXXXXXXXGNAA-AEPIAALTALAQRTGTLEGRHKQLQAKVALLDNSFGPKASDWAQTIKAFLQERVSEPAAGA---AGRAAVTVGT----RGKGGKRGLGIDAPAFVPQSA-----------AQRSTAAVCASXXXXXXXXXXXXXXXXXXXXVDVEGAKHEESAPEVVGAVQGDSTAADKPTAAKGAATATAAAAGK----LQRCAGCAETQERCSRLEKRVAESERALSLLQSQAXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXNWASKTSVEKLAAALRQLAARTKDGEDALALVDHGLRGVREEMAPLSRSVLTLKRLVESQLREKDQAAELLKGYVTTITREVAAISRQYIVGLMVPGGVAAA 689
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 3185 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 2334 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789603.2796814-UTR-P-littoralis_Contig132:107952..108737 | 1680789603.2796814-UTR-P-littoralis_Contig132:107952..108737 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig132 107953..108737 - |
| 1680789603.327324-UTR-P-littoralis_Contig132:111854..111920 | 1680789603.327324-UTR-P-littoralis_Contig132:111854..111920 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig132 111855..111920 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789603.2882235-CDS-P-littoralis_Contig132:108737..108971 | 1680789603.2882235-CDS-P-littoralis_Contig132:108737..108971 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig132 108738..108971 - |
| 1680789603.30092-CDS-P-littoralis_Contig132:109585..109702 | 1680789603.30092-CDS-P-littoralis_Contig132:109585..109702 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig132 109586..109702 - |
| 1680789603.3123984-CDS-P-littoralis_Contig132:109871..111854 | 1680789603.3123984-CDS-P-littoralis_Contig132:109871..111854 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig132 109872..111854 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig132.26.2 >prot_P-littoralis_Contig132.26.2 ID=prot_P-littoralis_Contig132.26.2|Name=mRNA_P-littoralis_Contig132.26.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=778bp
MSNDIHTGDNHADDFDLFWGMGPTSENRRMHSSNVAEISTSSAPSNSGST
LSSTSSSLAGGGGLNTTTATLMGSLWSHGGAPHLEAYGHRHHAHASQGDG
LQHVHSVGGSTPSPVRSRRPVWLPPPKQHHQHSSTSITSRGGGTGDSAKN
HVGQHHHHPSSPVQAVAVDGGDGAAITPPPSSSSLFPANARLVDLKSSSS
GGNIVSSSTSSDVACKLEELAAVITSSVLGKVDAGVREALSTSQQQHQQQ
QQQQSGGGVPFAAPRTAAALEDDQRRTGAAEAEAVAAAVAPLRSRLAALE
EQMSQLMAAAALDRSGSSNNSSGGGGGSDTREGGRGSSGGVGGGVGFGRA
GGGGSAAEVEPLLALNALAQRTGTLEGRHRQVQAKVALLDNYFGPKASDW
AQTIKTFLLEREASGGAPRGAGNVAAVNSTAGGGGGKGGKKKLAVDAPVF
SPRAARTGYGNGGAGGAPREGGAAAVPTGPPSVPLVDVGGTKHDKSAPEG
NDDAVENTTTSATAASMVTAGVGRAGRVVDRCAACAETQERSSRLEKRVA
DSEETLALLQSKAPNTTSVATTAAVDAVKAWMATEISRRDAAAGKAVSPS
GSLGRQQKALATSGGGGGGNWASKASLEKLAGELRQLSERMNDGDDAMAF
VDHGLKGVRDEMLPLSVSVSALKRLVETQLREKELAAELLKGYVTTITRE
VATTTRHYINGLVSPAKLSTADSGGVAEQTAQPSVTSSAVAGAPAPLEVF
HSAPPVVVVSVDDKDSTSVQNKGVDRS* back to topmRNA from alignment at P-littoralis_Contig132:107953..111920- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig132.26.2 ID=mRNA_P-littoralis_Contig132.26.2|Name=mRNA_P-littoralis_Contig132.26.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3968bp|location=Sequence derived from alignment at P-littoralis_Contig132:107953..111920- (Pylaiella littoralis U1_48)
CCTGGTAGTCCTGGTACTTCTCCCCCTGCTTCTTTGCTGTGATAGGTACG
CCTTTCACGACCAGAGATGAGTAATGACATCCACACTGGAGACAATCATG
CAGATGACTTTGATTTGTTCTGGGGTATGGGCCCAACGAGTGAAAACAGG
AGGATGCACTCCAGCAACGTTGCAGAAATTTCAACATCATCCGCTCCCTC
GAATTCAGGCTCAACCCTCAGCAGCACCAGCAGCAGCCTCGCAGGCGGCG
GCGGCCTCAATACGACGACGGCGACACTCATGGGAAGCCTTTGGTCCCAC
GGCGGTGCACCTCATCTAGAAGCCTACGGTCACCGACACCATGCCCACGC
CAGCCAAGGCGATGGGCTGCAACATGTACATAGTGTAGGCGGATCCACCC
CGTCACCTGTGCGCTCCCGGAGACCGGTCTGGCTACCGCCGCCGAAACAA
CACCACCAACACTCGTCGACGAGTATCACTAGTCGAGGAGGGGGTACAGG
GGACTCAGCGAAAAATCATGTCGGTCAGCACCATCACCACCCGTCTAGCC
CAGTACAAGCAGTAGCAGTAGACGGTGGTGATGGTGCCGCTATTACGCCG
CCCCCTTCTTCATCGTCGCTGTTTCCGGCGAATGCTAGATTAGTCGATCT
CAAAAGCAGTTCAAGCGGCGGCAACATTGTTAGCAGTAGCACCAGTAGCG
ACGTGGCGTGCAAGCTGGAGGAGCTTGCAGCAGTGATAACTTCGTCCGTG
TTAGGTAAGGTCGATGCCGGCGTTAGGGAAGCGTTGTCGACGAGCCAGCA
GCAGCATCAGCAGCAGCAACAACAGCAGTCCGGTGGCGGGGTGCCCTTTG
CCGCTCCTCGTACTGCGGCGGCTCTCGAGGACGACCAAAGACGGACGGGG
GCAGCGGAGGCGGAAGCAGTTGCGGCTGCCGTGGCGCCTTTGCGCTCAAG
ACTTGCGGCTCTCGAGGAGCAGATGTCTCAGCTTATGGCGGCCGCCGCCC
TTGACCGCAGCGGTAGCAGTAACAACAGCAGCGGCGGCGGTGGTGGCAGT
GACACGAGGGAAGGGGGTCGAGGCAGCAGTGGCGGTGTCGGCGGGGGCGT
GGGATTTGGGCGGGCTGGGGGGGGCGGGAGTGCAGCAGAGGTGGAGCCGC
TTCTTGCCCTGAACGCTCTCGCTCAGCGTACGGGCACCCTCGAGGGCAGG
CATAGGCAGGTGCAGGCCAAGGTCGCTCTGTTAGACAATTATTTTGGTCC
CAAGGCATCAGACTGGGCTCAGACAATCAAGACGTTTCTTCTAGAGCGGG
AGGCGTCGGGAGGAGCACCCAGGGGCGCGGGAAACGTGGCGGCGGTAAAC
TCCACGGCCGGGGGGGGCGGTGGCAAGGGAGGGAAAAAGAAGTTAGCCGT
TGATGCCCCCGTCTTCTCCCCCCGTGCAGCACGTACAGGTTATGGGAACG
GCGGTGCCGGCGGCGCCCCCCGCGAGGGTGGAGCAGCCGCGGTACCGACC
GGCCCTCCCTCTGTTCCCCTCGTTGACGTCGGCGGCACGAAGCACGACAA
AAGCGCACCCGAGGGAAATGATGACGCCGTAGAAAACACAACAACGTCAG
CAACAGCAGCATCTATGGTAACGGCGGGAGTAGGACGGGCGGGAAGGGTC
GTCGATCGTTGCGCGGCGTGTGCGGAGACGCAGGAGCGCTCCAGCCGGCT
CGAAAAACGAGTCGCAGACTCGGAGGAAACGCTGGCACTGCTGCAGAGCA
AGGCACCTAACACGACTTCGGTAGCGACAACGGCGGCTGTCGATGCCGTG
AAGGCATGGATGGCGACCGAGATCAGCAGACGGGACGCCGCCGCAGGAAA
GGCGGTGTCGCCATCAGGTTCGTTAGGACGGCAGCAGAAAGCCCTAGCGA
CATCGGGAGGGGGGGGCGGGGGGAACTGGGCCTCGAAGGCCTCTCTGGAA
AAGCTCGCGGGCGAGCTGAGGCAGTTGTCAGAGCGGATGAACGACGGGGA
TGACGCGATGGCGTTCGTGGATCACGGCCTCAAGGGCGTGCGAGATGAGG
TGAGGTGCAGCGGCTGAAGTGTAATGCTGATTCTTAGGCTCGAGTAAAAC
TTGTTGTCCAGAAGTGGCCCTCGCATTCGTAAGGTACCGAACATCAGCCT
GAGAATGGTCGTGTGCTTCTTCCTACCTACCCACCCGCAAGACTCTCTTC
TCTCGTTCGTTGAAACAGATGTTGCCGCTGTCCGTATCGGTGTCGGCCCT
GAAGCGGCTGGTGGAAACGCAACTGAGAGAGAAGGAGCTTGCGGCGGAAC
TGCTTAAGGGATACGTCACGACCATCACCAGGGAGGTAAGTCCTATCTTT
GCCCTCATGTACACACGTTTCGTAGGATCTGCCCCCCTGTTTACCATCGC
TAATTCGAACCGGCCTCACGAGTTATTATAGCGGTCAAGTCATTGGAGTC
ATCGTGAAAACCCGGTTCGTGTATGACTAGATATTTGTTTTTGTTTTCGC
TCTGCTGTATCCCTAAGTCCGGAGTAAAGTTGACGTTGTGCATCTATGCA
TCTATCCTAAGGGAGGTTCATGATAGGGATTCCCTCGCTGATGTGTGCTC
ATCGGCAAAACTCAATCTTTGTCTTCGTCGTCGTTCATGTGTGCTTGTGT
TGTGGAGCGATTCAGAGTGTCCTGCGGCTGACAGGACTTTTCTATTCGCA
CATAGCAGCATCAGCAGCAGCGGCAGCAGCAGCAACAGCAGCAACAGCAG
CAACAGCAGCTGCAGCTGCGTTTTACAGTTTTTCCGGAACGCTTTGAGGG
TTCCAGTTGTTTGATTCATCTCTTCGCGAGGGAAGTAAGCACTGTACTGC
CATCAAAACCAGTCCCGTAATTCACCCACGAGAAATGGTCGTCCTCGCGT
AGATAAATTCATTTTTAACTCGCATTCACTCAATGTGCGCCGTTTCAAGG
TGGCCACAACTACTCGACATTACATCAACGGGCTCGTGTCTCCGGCGAAA
CTCAGCACGGCCGATAGTGGCGGCGTGGCCGAGCAAACCGCTCAACCGTC
TGTGACGTCTTCGGCAGTTGCAGGGGCACCCGCACCACTGGAAGTGTTCC
ATAGTGCGCCACCCGTTGTTGTTGTAAGCGTTGATGATAAGGACAGTACC
TCTGTCCAAAACAAAGGTGTTGATAGATCTTGACGTTGATGTTCCAGCAA
CGGCAGACGACAACGGCGGCGGGGTTTGCCGGAGACGGAAGGAGGCCTGC
GTTTTTGTCCCATGTTCCCGACCTGACCATGTCGCCCGCGAAGTGGGCGG
TGGTAACGGTGGTGGGTAATGCGTCTTTTGTGACCGGATATAGGTCAACA
CCTCACCCGGTGGTGTACTGGTTGTGTTTTCCGTGTTTGACCATGACGTA
TATTATCCCGCATCAGAGTGTAGATGTGGAATGCGGGCCGCAGGGCTGGC
AGCAATTTGTGGTATTTTTTTTTGATAATATTGAAGCAGGGGTCTAATTT
AATAATGGCCTGGGGTGGCTCCAGGCTCATCCGAATCCCATCCTTTTTTT
TGTTGTCGGGCGTGGGAGAGAGTAATAAAATGGAATCTGGAGATGAGGGG
GGAAACCACCAAGCGGCGAGAACCAGCTGCAAGAAGAGCAACAAACATAT
TGTAATGTTCTCGATAATAGGGTCAGAGTAAAAACTCGGGAAGAACGTGG
TTTACGAAGAGACCATGCCCGGCGACATGGTGAAGTGTCCTAGCGCACAG
CACAAGAAGTTATTATCTTCACGTTGTACGAAAAATACGCGTACGTACGT
GAGGGAAGGAAGACGAGACGAGATGATCGTCAATTGACAAAACAGGGGAA
TGTCGTGTTTGAGACTTCGGCGGGACGTACGTGCACCTCGAGCTAACAGT
ATACCTCGTGGGTTGTTTCACAGGCAGGCGTGTTCAACGGGTTACTACTG
TCTGTTCAAGAAAGATGA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig132:107953..111920- >mRNA_P-littoralis_Contig132.26.2 ID=mRNA_P-littoralis_Contig132.26.2|Name=mRNA_P-littoralis_Contig132.26.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2334bp|location=Sequence derived from alignment at P-littoralis_Contig132:107953..111920- (Pylaiella littoralis U1_48)
ATGAGTAATGACATCCACACTGGAGACAATCATGCAGATGACTTTGATTT
GTTCTGGGGTATGGGCCCAACGAGTGAAAACAGGAGGATGCACTCCAGCA
ACGTTGCAGAAATTTCAACATCATCCGCTCCCTCGAATTCAGGCTCAACC
CTCAGCAGCACCAGCAGCAGCCTCGCAGGCGGCGGCGGCCTCAATACGAC
GACGGCGACACTCATGGGAAGCCTTTGGTCCCACGGCGGTGCACCTCATC
TAGAAGCCTACGGTCACCGACACCATGCCCACGCCAGCCAAGGCGATGGG
CTGCAACATGTACATAGTGTAGGCGGATCCACCCCGTCACCTGTGCGCTC
CCGGAGACCGGTCTGGCTACCGCCGCCGAAACAACACCACCAACACTCGT
CGACGAGTATCACTAGTCGAGGAGGGGGTACAGGGGACTCAGCGAAAAAT
CATGTCGGTCAGCACCATCACCACCCGTCTAGCCCAGTACAAGCAGTAGC
AGTAGACGGTGGTGATGGTGCCGCTATTACGCCGCCCCCTTCTTCATCGT
CGCTGTTTCCGGCGAATGCTAGATTAGTCGATCTCAAAAGCAGTTCAAGC
GGCGGCAACATTGTTAGCAGTAGCACCAGTAGCGACGTGGCGTGCAAGCT
GGAGGAGCTTGCAGCAGTGATAACTTCGTCCGTGTTAGGTAAGGTCGATG
CCGGCGTTAGGGAAGCGTTGTCGACGAGCCAGCAGCAGCATCAGCAGCAG
CAACAACAGCAGTCCGGTGGCGGGGTGCCCTTTGCCGCTCCTCGTACTGC
GGCGGCTCTCGAGGACGACCAAAGACGGACGGGGGCAGCGGAGGCGGAAG
CAGTTGCGGCTGCCGTGGCGCCTTTGCGCTCAAGACTTGCGGCTCTCGAG
GAGCAGATGTCTCAGCTTATGGCGGCCGCCGCCCTTGACCGCAGCGGTAG
CAGTAACAACAGCAGCGGCGGCGGTGGTGGCAGTGACACGAGGGAAGGGG
GTCGAGGCAGCAGTGGCGGTGTCGGCGGGGGCGTGGGATTTGGGCGGGCT
GGGGGGGGCGGGAGTGCAGCAGAGGTGGAGCCGCTTCTTGCCCTGAACGC
TCTCGCTCAGCGTACGGGCACCCTCGAGGGCAGGCATAGGCAGGTGCAGG
CCAAGGTCGCTCTGTTAGACAATTATTTTGGTCCCAAGGCATCAGACTGG
GCTCAGACAATCAAGACGTTTCTTCTAGAGCGGGAGGCGTCGGGAGGAGC
ACCCAGGGGCGCGGGAAACGTGGCGGCGGTAAACTCCACGGCCGGGGGGG
GCGGTGGCAAGGGAGGGAAAAAGAAGTTAGCCGTTGATGCCCCCGTCTTC
TCCCCCCGTGCAGCACGTACAGGTTATGGGAACGGCGGTGCCGGCGGCGC
CCCCCGCGAGGGTGGAGCAGCCGCGGTACCGACCGGCCCTCCCTCTGTTC
CCCTCGTTGACGTCGGCGGCACGAAGCACGACAAAAGCGCACCCGAGGGA
AATGATGACGCCGTAGAAAACACAACAACGTCAGCAACAGCAGCATCTAT
GGTAACGGCGGGAGTAGGACGGGCGGGAAGGGTCGTCGATCGTTGCGCGG
CGTGTGCGGAGACGCAGGAGCGCTCCAGCCGGCTCGAAAAACGAGTCGCA
GACTCGGAGGAAACGCTGGCACTGCTGCAGAGCAAGGCACCTAACACGAC
TTCGGTAGCGACAACGGCGGCTGTCGATGCCGTGAAGGCATGGATGGCGA
CCGAGATCAGCAGACGGGACGCCGCCGCAGGAAAGGCGGTGTCGCCATCA
GGTTCGTTAGGACGGCAGCAGAAAGCCCTAGCGACATCGGGAGGGGGGGG
CGGGGGGAACTGGGCCTCGAAGGCCTCTCTGGAAAAGCTCGCGGGCGAGC
TGAGGCAGTTGTCAGAGCGGATGAACGACGGGGATGACGCGATGGCGTTC
GTGGATCACGGCCTCAAGGGCGTGCGAGATGAGATGTTGCCGCTGTCCGT
ATCGGTGTCGGCCCTGAAGCGGCTGGTGGAAACGCAACTGAGAGAGAAGG
AGCTTGCGGCGGAACTGCTTAAGGGATACGTCACGACCATCACCAGGGAG
GTGGCCACAACTACTCGACATTACATCAACGGGCTCGTGTCTCCGGCGAA
ACTCAGCACGGCCGATAGTGGCGGCGTGGCCGAGCAAACCGCTCAACCGT
CTGTGACGTCTTCGGCAGTTGCAGGGGCACCCGCACCACTGGAAGTGTTC
CATAGTGCGCCACCCGTTGTTGTTGTAAGCGTTGATGATAAGGACAGTAC
CTCTGTCCAAAACAAAGGTGTTGATAGATCTTGA back to top
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