mRNA_P-littoralis_Contig132.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.24.1
Unique NamemRNA_P-littoralis_Contig132.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A835Z1Q2_9STRA (Phosphatase inhibitor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-16
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   97 RLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXEERERHWAKPKRGRPRAHQLYH 315
            RL+ R +V W  +V++NE  G+KSSKRCCIFHK+R F ESDS         EERE++W++PK GRP   Q+YH
Sbjct:   32 RLQARKAVQWDEEVVDNENAGRKSSKRCCIFHKQRKFGESDSEESSSDLDDEEREKYWSEPKPGRPNRGQVYH 104
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: D7FX97_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX97_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-14
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:  154 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXEERERHWAKPKRGRPRAHQLYHG 318
            MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXX    R WA+PK GRP+AHQLYHG
Sbjct:    1 MGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 55
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: B7FNT7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNT7_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-11
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   79 PATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXEERERHWAKPKRGR 291
            P  L L L+  PSV W  DVI+NEGMG+KSSKRCCIFHK+R FDES +         +  +R  A+PK+ +
Sbjct:   59 PEPLVLTLQAHPSVRWENDVIDNEGMGRKSSKRCCIFHKQRPFDESSTDSSDQDGNDDRDKRKIARPKKSK 129
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A7S0GFS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFS9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   88 LTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDS 222
            LTL L PRPSV W   VI+NEG+G+KSSKRCCIFHK+R F ES +
Sbjct:   18 LTLTLAPRPSVRWEEGVIDNEGLGRKSSKRCCIFHKQRGFGESST 62
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A7S1Y5A8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y5A8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.570e-10
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   73 ASPATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDS 222
            A+   LTL L+ RPSV W  +V++NEG+G+KSSKRCCIFHK+R FDES +
Sbjct:   58 AADEVLTLTLQARPSVRWDENVVDNEGLGRKSSKRCCIFHKQRAFDESST 107
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A7R9YG19_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG19_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.800e-10
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   82 ATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXEERERHWAKPKRGRPRAHQLYH 315
            A L L L P+P VTW  DV++NE M KKSSKRCCIFHK+R F ESDSXXXXXXXXX       A PK    + H+ YH
Sbjct:   57 APLRLVLEPKPRVTWANDVVDNEHMDKKSSKRCCIFHKQRCFGESDSXXXXXXXXXXAP----APPKNRNYKPHETYH 130
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A7S2N0T4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0T4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.800e-10
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   55 IEEAAAASP-----ATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDS 222
            I E +AA P       L L L+ RPSVTW  DV++NEG+G+KSSKRCCIFHK+R F ES +
Sbjct:   57 ITETSAALPDPQEGEVLVLNLQARPSVTWDEDVVDNEGLGRKSSKRCCIFHKQRPFGESST 117
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: W7TJC0_9STRA (Protein phosphatase inhibitor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJC0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.050e-10
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   55 IEEAAAASPA----TLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDS 222
            +EE AAA        L L+L PRP V W  DV++NE M KKSSKRCCIFHKKR F ES S
Sbjct:   39 VEEKAAAKEGREDRVLRLQLDPRPHVKWDQDVVDNEHMNKKSSKRCCIFHKKRAFGESSS 98
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: A0A7S3P7B7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7B7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.210e-9
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   55 IEEAAAASPATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDSXXXXXXXXXEERERHWAKPKRGRPRAHQLYH 315
            + E   + P  L L LR R +V W   V++NEGMG+KSSKRCCIFHK+R F ES +             R  A+PK+      Q +H
Sbjct:   40 VTETQQSQPEVLRLTLRGRNNVQWDEAVVDNEGMGRKSSKRCCIFHKRRAFGESSTDSSEEEDKDGNGNRKIARPKKKEVPDFQRFH 126
[Close]
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Match: B8BQ92_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ92_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 3.560e-9
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   88 LTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIFHKKRNFDESDS 222
            L L L+PR  VTW  DV+NNEG+G+KSSKRCCI+HK+R F ES +
Sbjct:   75 LRLTLQPRSHVTWDDDVVNNEGLGRKSSKRCCIWHKQREFGESST 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1Q2_9STRA1.600e-1653.42Phosphatase inhibitor-domain-containing protein n=... [more]
D7FX97_ECTSI1.090e-1485.45Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
B7FNT7_PHATC2.100e-1150.70Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0GFS9_9STRA1.370e-1068.89Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1Y5A8_9STRA2.570e-1062.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9YG19_9STRA3.800e-1060.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2N0T4_9STRA3.800e-1057.38Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TJC0_9STRA9.050e-1060.00Protein phosphatase inhibitor n=1 Tax=Nannochlorop... [more]
A0A7S3P7B7_9STRA2.210e-941.38Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8BQ92_THAPS3.560e-964.44Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:100124..107335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr42578
PFAMsPPI_Ypi1
Model size2151
Max annot lvl2836|Bacillariophyta
KEGG koko:K17553
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.19e-15
EggNOG OGsKOG4102@1|root,KOG4102@2759|Eukaryota,2XDQC@2836|Bacillariophyta
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-26_004070.1
DescriptionProtein phosphatase inhibitor
Cds size282
COG categoryS
BRITEko00000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.24.1prot_P-littoralis_Contig132.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 100163..105213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.2034295-UTR-P-littoralis_Contig132:100123..1001621680789603.2034295-UTR-P-littoralis_Contig132:100123..100162Pylaiella littoralis U1_48UTRP-littoralis_Contig132 100124..100162 +
1680789603.2319353-UTR-P-littoralis_Contig132:105213..1058171680789603.2319353-UTR-P-littoralis_Contig132:105213..105817Pylaiella littoralis U1_48UTRP-littoralis_Contig132 105214..105817 +
1680789603.241172-UTR-P-littoralis_Contig132:105845..1064521680789603.241172-UTR-P-littoralis_Contig132:105845..106452Pylaiella littoralis U1_48UTRP-littoralis_Contig132 105846..106452 +
1680789603.2518978-UTR-P-littoralis_Contig132:106716..1073351680789603.2518978-UTR-P-littoralis_Contig132:106716..107335Pylaiella littoralis U1_48UTRP-littoralis_Contig132 106717..107335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789603.2157898-CDS-P-littoralis_Contig132:100162..1002981680789603.2157898-CDS-P-littoralis_Contig132:100162..100298Pylaiella littoralis U1_48CDSP-littoralis_Contig132 100163..100298 +
1680789603.223918-CDS-P-littoralis_Contig132:105067..1052131680789603.223918-CDS-P-littoralis_Contig132:105067..105213Pylaiella littoralis U1_48CDSP-littoralis_Contig132 105068..105213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.24.1

>prot_P-littoralis_Contig132.24.1 ID=prot_P-littoralis_Contig132.24.1|Name=mRNA_P-littoralis_Contig132.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MGGESIEEAAAASPATLTLRLRPRPSVTWGADVINNEGMGKKSSKRCCIF
HKKRNFDESDSDESDSDASDEERERHWAKPKRGRPRAHQLYHG*
back to top

mRNA from alignment at P-littoralis_Contig132:100124..107335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.24.1 ID=mRNA_P-littoralis_Contig132.24.1|Name=mRNA_P-littoralis_Contig132.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7212bp|location=Sequence derived from alignment at P-littoralis_Contig132:100124..107335+ (Pylaiella littoralis U1_48)
CAGCAGCACGAGACAGCCGGAACAGGGACCTCGGGTCAAATGGGGGGCGA
ATCTATTGAAGAAGCAGCAGCAGCGTCCCCGGCGACGCTAACGTTACGAC
TACGGCCGAGGCCCAGCGTCACATGGGGGGCGGACGTGATCAACAACGAG
GGGATGGGGAAGAAGAGCTCCAAGCGTGAGTGCGATCGGCGAACGCGTTG
GTATCATACGAAGTACTTCGGAGTATATGTAGTTGTATCATGCTGTAGGA
GTATATGCCGCCACCTTGAACATTGGTTTTTGGAGCTGGGTTTTTGGGTT
TGTAAACAACACACACACACACGCACACAAACATTCCGCATCTTCGTCTG
TGCTCTCATCTCGAATCTCGAATGAAATACGAAATACTACCGTTGGGTTG
GAAGAGTGTATTACCTCGTCATAGAGGGTCGAACAAAGTTCGTGAACACT
TCTCTCTCAGACCATAATTTCTTACTGTCTGTGTCTTTCTCTCCACCAGC
CCTCCGCCTGCTCCCTCTCCCACCCTTGATTGAATGAACTGCACGGGTCT
GCACACAGCAGTCTGTTTGCCCCCGCGTCCGGTTGCCGGAATAACTTACA
GCAAGTCAGATAGTTCATTGAAAACCGCCGTACAGCAGCGGTAGACACGA
TTGATGTGACTTGAAAAATCCTCCGTGTATTTACTTCGTATCTACTTGTA
TTATACATAGACTATGATATGATACGAAGTTTTATCTGGGCCGGCAGTAT
CTACATCCAGACCCTCATCTGGAGAGAGGCGAACACATTGACGTGTCCGT
AAGCTTTTATTAAAACACACAGGCTGGGCCGACGGCCTGAAACCCGAAAC
CAAAAGAATAAAGAAAGTTTACTTGTACGAAGTGAAGAGTACCGGTAGAT
TCATCTGACATGAGGATTGAGTGTGGATGTGCTCCGTATCTTCAAAGATG
GAGTCACTGACTGAGAGCTGGTATTCTGTGATATCACTGCTGTACAGCAG
TACGCTTCTTTGCTTCTTGAGTGTTCGTTGGGCCGGTTCATCTCGTGCCA
CGTCATTTTTTTTTCTCAACCGAAGGAAAGAAGGCAATAAGGCCGTTTCT
TGTAGGGCCGGATTTTTTTTTCATTTTTTGATAGAATCCGAACGAACTTT
TTCCAGCCAACGGTTGCCGATCCGCTGTTTTTAACACAACAAACACGTGA
TTATTTTTTTTTCAGCAGTATGATGCAGCAGCGGTACCAGTTGCAACCCT
GCTAGATCGGCAATTTTTTTTGGCGGAAATCCGTTGGTAATCATCAGTCA
CATCCCATCCCTCCTTCACTGCTGTACAAAATGTAGTAGTATATCCTGCT
GCCACGACGTACTACGGTAGCTGCTATGATTTGCACGTTTGTACGTACGA
TATGATGTGACAGCAGTTGTAGTCGAATCAAGTAATATTGATCTCGAAGA
CACAACGTTCAGGGTATGGCTTTGCGGCGCTCACGAATCTGACATATCAC
CGTCGTTCCACGCTGACAACTGGCCTCATCCTTCTTCCACTCCACCAGGT
ATATGATACTTCGTACGAGTTAAGCCTTCTCTTACAGGGAGCTTTGATTC
TTGGAATCCAACGGCTTCACAATAACTTTTTAATACATACTGCTGTCGAA
TATTAACTTCGAATAAATATCATCTTCGACCTGGGGTTCTCTTCGGTTGG
TGATGGCATAAATGGCCAAAATCATCCAGTTCGGCCATAAAACGTCCAAC
CGAGTCGCTTTGAACTTTACATCCATCGATGGATTTCACAGTAGCTCAGA
TTTCAGATTTCAAGCCGAAACACCAGGAGTTCCATGTTGGAAAAGGCCAC
ATGCGACCACGAGGTTGTACCGCAGTGGTTCACAGCCCGCACAAAGCACA
AATACACACACACGAGCAAACATACACGCGGACCAGGCGCGGATACCCCA
GCTACGTGCAATCCTGGCAAGCAGCGACGATCCACAACTCGACATTTCTT
GCATGTCCAAGAAATTGCGATCCTTTAGAATTCCGCCGCATAATATACCT
TAAACATTTTGACGTAAAATTTCAGTATTTGAGAAGCAGCAAGCGGACGA
CTATCAGGGTGGCTCTTGTCCCCGCGGAATGCCCAAATCTAAAATGTAAA
ATCTAAAATCGAAATTAGATTTCGATAGAAATGGGGTTGGGTCCACGCAA
CTGCAGCTGCGTTCATCTAAAATCTTAAAAGCGGAGGTGCAATAAAAAAA
TAAACGGAAGAGGAATGACCAGCAAGTCAAAAGATAGACGGTCGTGGAAT
GCACGCAGTGACGATTGTTAAGCTAGTGCGGGAGCTACCATTGCCTCGAA
CGCAGTGCACGGTACTGCCCTTAATCGGCCTGACTCAGGCGCGTTGGTTA
TCCTTAGTTTGAGATCGATAACTAAAAAACTATGGAAGAAATGTGTGTTT
GATTGCGTGTTGCTCACCAGCATACCCTACATACCCCTACTTGACCCTTT
TCAGGGAGTCAACGAAGCCCACGCATTTAACACTTGTTGTACATATTCTC
TGCAGAGCGACACCAGGTATGTTACTCAGATGAGCTCGTCAGCATATCGG
CAGACTCCCCTCAGACAGAGTTCCCTTCTTTGCAGTTGGCATTACCATCT
TCGTGTGGAGGTACCGTTTGTGTACAACAGGCAGCTACGAGAAGTTGTCT
TGTGAGTAAAAGCCATACCAGGTACCGGTGTTGATATCGAAATGCACAGC
AGCACCACGTATGTACATACTAGTATAAGAGTCGTGAGAAATAACAGCAG
TCTCTGCTGTCTGCACACTTCTGCACACTTGAGTGGTGCTTTCCGGATTA
TTATCGGAATCCGCTCAAATAAAGTGAACTGTATTATACGGGACACCAGC
CTCCTGCCGAGGTCACACATTCGTACAACAGGGGAATACAAGTTGGGCTG
TGACCAACTAAACAAAGACACATCGATGTGCACCGATGTGCTCCCTGAAA
GCACAGCAAAACACCTCTCTGCTTGGTTCTAGGTCTATTCGATTTTTGAG
CCGCATTTTAGATTCTAAACTCTGATTTTTTTCGATTCTACCCTTTCCTT
GAGCTTTCGAAATAAAAAGGGCAAAATCGAAAATCTGTTGGATGCGCCGC
ATGTGCGGAGGGAAGTTTGGCCAACCAGCAGTTTTTTAGCTTTCGATTTT
CGATTTCGATTGGGTTTTTTCCGGGGACAAGAGCCACCCTCACCTCCGTG
GGACAGCCCGCAACCGTATGACCCACAAAAAGATTGGGTACTGTACGCCA
AGCGATACTAAACGGTCTCGCCGCACTAGACGGTCTCACCGCCTTTCGGG
ATATTTCAGCGACAACACTGGAGGCGTTCCCGCCGCCTTTCACGGTATTC
AGTGGTTTCTATCTCCAGTCCGCCGTGTTGTCTCAAAACACCCTCATACA
TCTCGAAATTTCGAAGAAACGGCCAACTCGAAAAAACGTGCCCGGTAAAT
GGTGTTTTGCGTATTCAGCAGCTATTATATATTGTAGCTCTCCTTGAACT
TAAGCGCAACGGCAAAACTGACCCTCGTGCCATATATCCTTGGTGTGCAG
TTTGGGATAAGCACCGTGGACACAAACTTGAAGTAGAGAGAACAGAGAAA
CAACAGCAGGAGCAGTACAACAGTAGAGGCATGAAGGATCACTAGTGATG
TGCGATGTGACGGTTCGGACAAATAAATGACGCTACTCGCAAGTGAAGTT
ATCGGCAGAGCGAAACTCGCAGGTGAGCGGTGCGGATCAAACACTTTCTG
TAAGGATGCTGGTGTATTCCGTACAAAATTGCTACTGCTGCCATGGCTAC
CCTGCAAAACAAATATTTTAAGTGTATAACGATGGGCATCGTCTCGCATG
TACTGCTGTCGTACATGCTTGTATAATATCTGACTATGTCATCATCGTCG
GAAGACTCATACAGCACGGCATAATGGCCCGGGCAAAAGGTAAAGACCGC
CGTGCCACAACGATGGTTGCATGTGTTGACTTGGGGCACGTAGGTACAGC
CATACCGGGTAGCGCAGGTTGAAGTTGAAAGTATTGGTGTCAAACCTGAA
GAACTGGCGGTGAAAGCACATCAGCAGCAGATGATCATGCGGAATGTCCA
CGGATATTTGTCTATGGGCCACAAGTAGCAGCAGCAGCAGTGCCGAGTGA
AGCATGTTTCACCTTTTCCCTTTTTTTTTGCGCACATCTTGTCAATCCTC
AACTCCCCCAAAGTCTACGTCGACAGCACATCGTCTCCTTCATTCACTGT
ATAAAATATGGGGTCACACAGAAGAAATAAGCCCCCCCCCCCCCTCCCTG
GCCTTCTCTCTGCCATGCATGCCTTCATGTTCTAGTTATGCAGTGTTGTT
TATCGCTAGACAGAAGTGTTCAGTTTTATTTTTCTCTCGATGAGAGCAAT
TTCAAAGATCTGTGTGTCTCTTTCTCAAGAATCGGCACTGCCGTGCTCGA
CCACCCTCTTGACACATAACGCTACTTGCCTGGGGCGCAGCTCATCCGCG
CGAGTTCGGCACGCGAGCAAAGCGCCGATTGCGTCGGTTTTCACAACCAT
GCCTCATTTTGTCAGTCGTGTATGTACAGGCTATCACTACATAAGTTCCG
TCGTGCACCTTTGAAATGCCCCCCGATGGGCATCAACCCTGACGTCTCCC
GCTCCCTCCCCTCGTTCGCCCCTGTCACACGCTACGATCCTTTTTGACCT
CCTGAGACCCACGCCGAAACACCCCACCCCACCGCCCAAACTTATCGAAC
AGCACGCTGTACCCCACGGCACATACGTAATGACATGCTTCTCGTTCCAC
CGTCTTCCCGCAACAAACCAATACTCGCGAAACAAAACAAAACAAAGTAC
ACACGCACGCTCACAAACACGCACACACGCACGCACACGCACAGGCTGCT
GCATTTTTCACAAGAAGCGTAACTTCGACGAGAGCGACAGCGACGAGAGC
GATTCAGACGCGAGCGACGAGGAGCGCGAGCGGCACTGGGCGAAGCCCAA
GCGCGGCCGGCCAAGGGCGCACCAGCTGTACCACGGCTGAACCCGAACCG
ATTTTCGTTTTTTGTGTCGTTGAAGCTGGAAGAGTATTTCTGCAGAGCCG
CAGCCGGAGCCGGAGCCAAGTACGGCAGGCATTAGAGAGGCCGAATGAGG
GCGCACCGACTAGCATATTATGACAAGCCTTTTTTAAAACCCTCTCGACT
GCTGGTGGCGAGGGACTAGGAGCCCGTGCTTACCGAGAATGTTAGTGATG
AAAACGGCAGCGGCGGCATTTATAAGAAGTTAGGTTGGGCGTAGTATCAG
CACCCCCTCCCCCTTTTTGTTTTGTCGTGCATCTTCAGCAAGCGGGCGGA
AGCAGCAGTGCAGTAGAGAGAAGAGACGAAGGGTTACGTGTTTGCGGCTT
TTTTTTTTCGGTTTGCTGCTCGCCAGGCGGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGTCTAGCAGGCTTAAGGCTCATCAGCTGTGTGTAGTTGTCA
TGCCTTGGCATAGGTTTGGTTTGCGGATCAGTAGACCGTTTTCTCGTGGT
TCGACCAGTCGAAACCTCTTCTTTCTGTTTGGATGTAGTGAGCGATCCAC
AACGAGTAGGACTGAAATATCAGGCACTGTAGAGAGAGGCACAGGTAGAC
AAGCAGTGTAGTACCAGCAGAGAAATTTCTCCCTGTGCACCGCTGCTGCT
GTTGCTGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCCGTTGACGTGTG
AGTCAAGAGCGCGCAAGTTTGTATTCCACGGCGCGAAGGCAGTGAAGGCT
TGACTAAGAGCATATATAGACCTCTCCAAGCCTGCTCCTGCCGCTGCCGC
TGTCGCTCGGCTGTAGTTGTTTTGTGCGCTAGTCACTCTGCGATACTGTA
AGTATTGGGATGAGTTTGCAGGGAGCCATAAAGGTCGGGTTGCTTTCACA
ACAGTTGACAGTTGTTGCCAAGCCGAAACCGCCGGGTCTAGACGACACGG
AAAACGCGACCAGTTCGGTACGGACGGGACGGGACATAGGGCGCGGACAC
GTCGTAGCAAGCCGTGTTCATTACCTCGTCCGTCGTACTTAATATATTTT
GGATGTCATGCAGCTCTATGCATATTGTTCACAAGCGTTGGTACATCGTA
GGTAGATGTTGCACTTTCTTTTTATGTCTGACTTTTATGCTTGATTGCAC
AGGTAGCTGGAGGAGGCAGCCCCCTTGTAGACTCCGCTCCGGACATACCA
GCACGGAATTCCGTACGAAAAGCGCGCTCCAGGGAGGCGCTCGGCTGGCT
TTTGCGTCACCCCCCTAGATGTTTGTGCGACGAACGTTGATTGATGCTCT
GCGACGCTCTGCTCTGATGGCGAGAGACGTTTTGGCTTGTTGGTGTGCTT
TCAGCCGTGTCGCTTTTCCTGCCCCCCCCCACACACACGCATACCCGCCC
CCCCCCCCCCCCCAGAGCGTTACACTGCTGCACGAGCCCTGCTATCCTCT
GGCGGAGTAGCATGGTTTAGTTGCAAGTACGTCTTTTATGTCTGTTTTTT
TTTTCTTGGAGATCCATGCGTGACGGTTGGTTCTTTGTCTTCGACGTTTT
TATTCGTGTCATGAAGAGGCAGGCCATGTGCAGCAGTTGTGAATAAACTA
ATGATTAGAGCAGTTACACGAAAAATTCAACCAGGTGGGCAACGTCGTTT
ATGTGGGGCTTGGTATCGATGGGGAGGCGGTAGCGAGGGACCGCGTTGCT
TTTTACACTCCTCCCCGCCCCCCTCGATTGCGAGTCTCCTTTAAACGAGA
TTGGATAGCGCTTCTTGTGACTCTTGGCGCACGTCAAATCACGATGTACA
AAGTTTGCATCAAGGTCTGCGAGGTGTAGGATATCGATGTTTATTTGTGC
GAGTGTGTGATGTCGATGTTTATTTGTGTGGGTGTGTATGAAACTAAAAC
GTGGAAATTAATGTTGCTTCAGCAGTATTACTGCATGTGGTCCGGTTTCG
GCGCTCTCCTCCTCGCCAAGACCCAACAAGAAGAGAGATGTTATCGGGGA
ACCTCACCATGCGACGTGTACCGCCTGTGTTGTCAGCTCTCAGGCCGTGC
TGGTTCTAGACAACAGCAGTGTGCTGTGAAGAAGATGAAACATAGAGCAA
AATTGGACAATC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig132:100124..107335+

>mRNA_P-littoralis_Contig132.24.1 ID=mRNA_P-littoralis_Contig132.24.1|Name=mRNA_P-littoralis_Contig132.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig132:100124..107335+ (Pylaiella littoralis U1_48)
ATGGGGGGCGAATCTATTGAAGAAGCAGCAGCAGCGTCCCCGGCGACGCT
AACGTTACGACTACGGCCGAGGCCCAGCGTCACATGGGGGGCGGACGTGA
TCAACAACGAGGGGATGGGGAAGAAGAGCTCCAAGCGCTGCTGCATTTTT
CACAAGAAGCGTAACTTCGACGAGAGCGACAGCGACGAGAGCGATTCAGA
CGCGAGCGACGAGGAGCGCGAGCGGCACTGGGCGAAGCCCAAGCGCGGCC
GGCCAAGGGCGCACCAGCTGTACCACGGCTGA
back to top