mRNA_P-littoralis_Contig132.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.2.1
Unique NamemRNA_P-littoralis_Contig132.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig132.2.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.360e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:  275 RMGEQPMIGVCSTCTDAHVGRDFSAKKKHAREGPKICPRIQQEW 406
            RMG     GVCS+C +A VGR F    +HAR+G KIC R +++W
Sbjct:  201 RMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKICSRTREQW 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE6.360e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:6317..6764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size448
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.8865526-UTR-P-littoralis_Contig132:6316..63381680789602.8865526-UTR-P-littoralis_Contig132:6316..6338Pylaiella littoralis U1_48UTRP-littoralis_Contig132 6317..6338 -
1680789602.9052374-UTR-P-littoralis_Contig132:6761..67641680789602.9052374-UTR-P-littoralis_Contig132:6761..6764Pylaiella littoralis U1_48UTRP-littoralis_Contig132 6762..6764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.8966458-CDS-P-littoralis_Contig132:6338..67611680789602.8966458-CDS-P-littoralis_Contig132:6338..6761Pylaiella littoralis U1_48CDSP-littoralis_Contig132 6339..6761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.2.1prot_P-littoralis_Contig132.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 6339..6761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.2.1

>prot_P-littoralis_Contig132.2.1 ID=prot_P-littoralis_Contig132.2.1|Name=mRNA_P-littoralis_Contig132.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MAEHAQVLTADEVETRLHEIKTSSCWLKNGSVEKILGLAPGAIYLFLDSP
QQRGSMRRQTTKRKAGTAFTLPKYTSAGSNTDKNAELASDTDGGATNDRR
VLDLHRRTRGAGFLGEEKARQGGAENLPKNPTGVDSGSRS*
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mRNA from alignment at P-littoralis_Contig132:6317..6764-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.2.1 ID=mRNA_P-littoralis_Contig132.2.1|Name=mRNA_P-littoralis_Contig132.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=448bp|location=Sequence derived from alignment at P-littoralis_Contig132:6317..6764- (Pylaiella littoralis U1_48)
GAAATGGCGGAACACGCTCAGGTCCTGACAGCCGACGAAGTCGAGACGCG
GCTACACGAGATAAAAACCTCTTCTTGCTGGCTAAAAAACGGCAGCGTAG
AAAAAATTCTTGGCTTGGCGCCCGGCGCCATTTACTTGTTCCTGGACTCG
CCCCAACAGCGTGGAAGCATGAGGCGACAGACGACGAAGCGAAAGGCTGG
AACCGCTTTCACGTTGCCGAAATATACCTCTGCAGGCAGCAACACGGACA
AGAACGCCGAACTAGCATCGGACACGGATGGGGGAGCAACCAATGATCGG
CGTGTGCTCGACTTGCACCGACGCACACGTGGGGCGGGATTTCTCGGCGA
AGAAAAAGCACGCCAGGGAGGGGCCGAAAATCTGCCCAAGAATCCAACAG
GAGTGGACTCGGGAAGTCGTTCGTAGAGGTCGCGAGAGCGTGTGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:6317..6764-

>mRNA_P-littoralis_Contig132.2.1 ID=mRNA_P-littoralis_Contig132.2.1|Name=mRNA_P-littoralis_Contig132.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig132:6317..6764- (Pylaiella littoralis U1_48)
ATGGCGGAACACGCTCAGGTCCTGACAGCCGACGAAGTCGAGACGCGGCT
ACACGAGATAAAAACCTCTTCTTGCTGGCTAAAAAACGGCAGCGTAGAAA
AAATTCTTGGCTTGGCGCCCGGCGCCATTTACTTGTTCCTGGACTCGCCC
CAACAGCGTGGAAGCATGAGGCGACAGACGACGAAGCGAAAGGCTGGAAC
CGCTTTCACGTTGCCGAAATATACCTCTGCAGGCAGCAACACGGACAAGA
ACGCCGAACTAGCATCGGACACGGATGGGGGAGCAACCAATGATCGGCGT
GTGCTCGACTTGCACCGACGCACACGTGGGGCGGGATTTCTCGGCGAAGA
AAAAGCACGCCAGGGAGGGGCCGAAAATCTGCCCAAGAATCCAACAGGAG
TGGACTCGGGAAGTCGTTCGTAG
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