mRNA_P-littoralis_Contig132.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.17.1
Unique NamemRNA_P-littoralis_Contig132.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:45970..49855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size556
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.731596-CDS-P-littoralis_Contig132:45969..463641680789602.731596-CDS-P-littoralis_Contig132:45969..46364Pylaiella littoralis U1_48CDSP-littoralis_Contig132 45970..46364 -
1680789602.7457068-CDS-P-littoralis_Contig132:49696..497181680789602.7457068-CDS-P-littoralis_Contig132:49696..49718Pylaiella littoralis U1_48CDSP-littoralis_Contig132 49697..49718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.761287-UTR-P-littoralis_Contig132:49718..498551680789602.761287-UTR-P-littoralis_Contig132:49718..49855Pylaiella littoralis U1_48UTRP-littoralis_Contig132 49719..49855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.17.1prot_P-littoralis_Contig132.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 45970..49718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.17.1

>prot_P-littoralis_Contig132.17.1 ID=prot_P-littoralis_Contig132.17.1|Name=mRNA_P-littoralis_Contig132.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MSYYGPQVLQTEMAEHAQVLTADEVETRLHEIKTSSCWLKNGSVEKILAL
APGAIALLLDSIELEQRGSTRRQTTKRKAGTAFTLPEHTSAGSNTDKNAE
LASNTDEGATNSRRVLDLHRRTCGAGFLGEEKARQEGAE
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mRNA from alignment at P-littoralis_Contig132:45970..49855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.17.1 ID=mRNA_P-littoralis_Contig132.17.1|Name=mRNA_P-littoralis_Contig132.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3886bp|location=Sequence derived from alignment at P-littoralis_Contig132:45970..49855- (Pylaiella littoralis U1_48)
CCGAGTTGCCCGCTGAACAGCACAACTCTAGCCACATCCTTTCCGTCTAA
GAACGACACAGCTATACCATCAGCTTCCGAGCTTCTTCCTTCATCGCGTA
CGTGCGCTCCTCGATCTCGGCTGGTCAGCCAGTCGACATGTCTTACTACG
GACCCCAAGGTCAGATACCCTGCTGTTGTTGCATGTGTATCCTTGGGCAT
AATGAGACTCTGTCATACATGTTCCGGCCTTTAGCTCTGCATGGCAGCGG
CATGTGACAGAGTACTCTATGAATTGGTGTTTGCGTTCCAGAACGAGGCA
GAACAGAGACTAGCTGCCTCGCTCGACATATATACCCACTGGCTGCTCAT
AACACATCTCGTCCGTTTTTCGTTGTAAGTGCGATGGTGACCGGAGCACA
GCAGCAGCAGTATCACAGCACGAGCTCCATAGCACCTAACCTGCCACAAG
AGCGAGCAAGTAACCCAACGCGAGTCAGGCTAACGGTCAGGATATCACGT
AAAAACGTTAAAAATCGAATCCGCCCAATCGAACGGCGGATAGACTTCAT
TTTGGAACTTTCTGACCGACGGAATTCTTCATGTTGAAATCTCCTTGTCG
CGAACACGTCATTTTTCGATTTCAATTTTACAATTTTGATTTCCTGATTG
TCGTGGAGAGGGTGGCTCTTGTCAAAGCGTTTTGAGCCCATTCAAAAATC
AAAAATCAAAAGCCAAACTCGGAATATGTCACTGATAGGTCAACAATCCA
ATTTCAGTTTTATTCTTCCGAAACGGGAAGGAAAGTAAAAAACACTTTCC
TTCCCGCCAATAGATCCAAAACGCGGCTCAAAAACGAAAAGACCTAGAAT
ATGCGACAGAGAGGTGTTTGCTGTGCATTCCGGGAGCACATGGTGCACAC
TACATATGTTTGCTTAGCTGACCACATCACAATGTGTAGACCCCGGCTGT
ACACATGTGCTAGCTCCGGAGAAAGCTGGTATCACGCAGAATACAGATCA
CTTTGTTTGAGCGAATTCCGACCAGAATCCGGAGAGCAGCACTCAAGTGT
GTAGAAGTGTGCAGGAAGTTTGTTGCTCAACTGCTGTTTGCGTAGCTGAC
ACAGCCGCTACCTCCAAAAAATGGCAGATGTGCAACACGTACTTACTCAT
CTCTTGCCGAGTTTTTCAGTTATCGATCCCAAACAATTATCGATCCCAAA
CAAAGAACTACCAACGCGCCTGAGTCAGGGTGACGTGGGGCGCCATCGTG
CTCTTCGTTTGAGGCACGACAGCTCCCGCACTTGTCTTGGAATCGAGACA
CGGCATGCTCATATCACACACCACCTGTCTGTAACCCCTGTTTTTTTTAT
TTTACAAGTATCCGCTTTTGATTTTGGACGAACGCAAGCTGCAGCAGATC
GGAACCAACACGGAATCAAAATCAAAATCCAATTTTGTTTTTGATTTTGA
ATACGGTCAAAAATTTGACAAGACCCACCCTGGTTTAACCCTTCTGGGAC
CAGGGTATTCGGCGGGGCAACCCGAATAGCCCGGGGTCTAAAAAAACTGA
ACCAGCCGGTATTCCACCGCCCGAGAACCAGACACACACAAAGAAAGCCA
GCTCTTGGCTCCGCGTGCACTTATCATGAGAAAATTAACATGTGAGCACC
TCGCAGTCATTCAGCCAGGATCACGAACAAGGTCTCGCAACAGGCTGGTA
GCCTCCCTGGAGACACTAGTAGAGTTATCCGATGATCGCGATGCCGCCTC
CTGCTCTCAAATCTCTCGACAGGCTGGAAGCCTCCCTGGAGACACTAGTA
GAGTTATCCGATGATCGCGACGCCGCCTCCTGCTCTCAAATGTCTCGAAA
TCATGACTGGTCATCACAGGCCTCCCTCCCCCATATGTGAAACCAAGACA
ATACAGGAATGACGCTTTTTTTTAGCGCATTTTTGTCCACTGTATGTAGC
CCTCAACCTACATTTTTGTCAATCTGGGACACAGCAGGATGCATGTAGCA
GGCCCTACGGTGGTTGGAAGACTGCTGTGTGTTGCTCGTGTTGGATACTG
CTGTGCGGTGTTTCCTTCTATAATTAATTGATGCTGTGCAACAAACTCCA
TCGCGTTCTTTGGTTCGGGATTTGTTGTTTTCGTCCTCATCCCGGACATG
ACACCATCCCTATGTCCCCGACGAGACCGCCCCAAGAAATCAAAAAAGTA
AAATCAACAATTTCCAGTGAACAAAACAATGCACTGAAGACTTCAAAAGT
TCACACATACCCGGGGAGAAGACCGTTAAGGATTGCGGGACAACTGATGT
AACCGTTCGGTAAGAAGCAAACATATTGGTTCTAAAGTGCGGTGGAAACC
CGTCCAGAACCAAAAACACCACCAACCGGGGGCAACCACCCTTCTATTGA
GATGCACCAAGAGGAGCTGGCGACGACGTGCTGGAGTGAACAGCCGGTGG
GATAAGCTGTACATCTGATGTAAAATCGATCTGTGACCGGTGGTGAAAAG
TTTTAGCGAGACCAAAGAGAAATTGGTGATGGTTCTATCTCGTGCGGTTC
TAAAACAGGTGTTCTGCGCTCCCTGACAAACCTCCAGGAAAGCAGTTTCA
TCGCCAATAGTGCTGTAGGTCACGGAGACCAGATCTGATGGACTCTATAG
GCCAAGCATGAGTGCCAGGGTCGCATAGGGGCACCATAATGTTTTGGACA
GGCAGATATGCAGGTTTTCTCGATGTGTCAAATATGGGTCTGAAATCACG
CCATTTGAGGAGGTACGGCGCACCAGTGCGGCGTAAACGGGACCCACACA
GGGAGTACGACGCATACAGCGGCGTTGATCGATGCACCTATACCCATAGA
TCATCTTGGCCAAGTTTCTTTTGTCAGCAGTGCCCGGAATCGCAAAGTTT
TTGTGTTTTGTCGCGATTTACCCGATGTCGCGGTTTTTAAACACATTATG
GCGTTTTTCGCATGGTTGACTGTCCCCTTTTTTTTATCCAGGCAATTCAA
AAGATGGCCCCGGTAAAAGGCCTTTCATATAATGTCTTGTTATCGGGTAC
CGACCAAGAAATGCACTAATTATAGCGGTTTCCGTGTCGGCATTTTGTAC
AGCAGTCAAAAGCCTTATTAATAGGGATTTAGAGTTGAAAACACACCAGG
CACTGCTGTTGTGGGTTAGGCCATGGTGCACGGTGTAAGGACGACATAAA
CAACCTACCGCGGCCAGGTAGGTGCCCAAGAGGTGAAAAGGACGCTGCAT
CCAATGTAGTTGGCCTGTTTTAATGTACACAACAGTGCAAATTGTTGCTA
ATTTTGGTTATTGATGATGGACCCAGTGTGTGTCCACACCCAACAAGGCG
GTGGACGAGGATGGTTGCTGCGGTCGATGAGCTGTGCTTGAAGATAGGAA
TAATCGAGATTAACTTACATCCTCTTGCTCTTGATCCCCACACCTTTATC
AACATTTCGCTTATTTTGTTCCCATATAACATACTTCGAAGTACTACAAA
CAGAAATGGCGGAACACGCTCAGGTCCTGACAGCAGACGAAGTCGAGACG
CGGCTACACGAGATTAAAACCTCTTCTTGCTGGCTGAAAAATGGCAGCGT
AGAAAAAATTCTTGCCTTGGCGCCCGGCGCCATTGCCTTGCTCCTGGACT
CGATAGAGCTCGAACAGCGTGGAAGCACGAGGCGACAGACGACGAAGCGA
AAGGCTGGGACCGCATTCACGTTGCCGGAACACACCTCTGCAGGCAGCAA
TACGGACAAGAACGCCGAACTAGCATCGAATACGGATGAAGGAGCAACCA
ACAGTCGGCGTGTGCTCGACTTGCACCGACGCACATGTGGGGCGGGATTT
CTTGGCGAAGAAAAAGCACGCCAGGAAGGGGCCGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:45970..49855-

>mRNA_P-littoralis_Contig132.17.1 ID=mRNA_P-littoralis_Contig132.17.1|Name=mRNA_P-littoralis_Contig132.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig132:45970..49855- (Pylaiella littoralis U1_48)
ATGTCTTACTACGGACCCCAAGTACTACAAACAGAAATGGCGGAACACGC
TCAGGTCCTGACAGCAGACGAAGTCGAGACGCGGCTACACGAGATTAAAA
CCTCTTCTTGCTGGCTGAAAAATGGCAGCGTAGAAAAAATTCTTGCCTTG
GCGCCCGGCGCCATTGCCTTGCTCCTGGACTCGATAGAGCTCGAACAGCG
TGGAAGCACGAGGCGACAGACGACGAAGCGAAAGGCTGGGACCGCATTCA
CGTTGCCGGAACACACCTCTGCAGGCAGCAATACGGACAAGAACGCCGAA
CTAGCATCGAATACGGATGAAGGAGCAACCAACAGTCGGCGTGTGCTCGA
CTTGCACCGACGCACATGTGGGGCGGGATTTCTTGGCGAAGAAAAAGCAC
GCCAGGAAGGGGCCGAA
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