mRNA_P-littoralis_Contig1318.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1318.5.1
Unique NamemRNA_P-littoralis_Contig1318.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1318.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1318contigP-littoralis_Contig1318:8741..10982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size263
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.3328524-CDS-P-littoralis_Contig1318:8740..87971680789602.3328524-CDS-P-littoralis_Contig1318:8740..8797Pylaiella littoralis U1_48CDSP-littoralis_Contig1318 8741..8797 +
1680789602.3460326-CDS-P-littoralis_Contig1318:9548..96661680789602.3460326-CDS-P-littoralis_Contig1318:9548..9666Pylaiella littoralis U1_48CDSP-littoralis_Contig1318 9549..9666 +
1680789602.3571894-CDS-P-littoralis_Contig1318:10895..109811680789602.3571894-CDS-P-littoralis_Contig1318:10895..10981Pylaiella littoralis U1_48CDSP-littoralis_Contig1318 10896..10981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1318.5.1prot_P-littoralis_Contig1318.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1318 8741..10981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1318.5.1

>prot_P-littoralis_Contig1318.5.1 ID=prot_P-littoralis_Contig1318.5.1|Name=mRNA_P-littoralis_Contig1318.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
GTSPTCIRLRRQVTRLKTPCTTHRRQARHNILRFEITRGGLEPSAYSQPA
STMMSSRKVLNTDASLVREGLIGNTFPNVLRWSPRIR
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mRNA from alignment at P-littoralis_Contig1318:8741..10982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1318.5.1 ID=mRNA_P-littoralis_Contig1318.5.1|Name=mRNA_P-littoralis_Contig1318.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2242bp|location=Sequence derived from alignment at P-littoralis_Contig1318:8741..10982+ (Pylaiella littoralis U1_48)
GGAACGTCACCTACATGCATTCGTCTCCGACGCCAAGTAACGCGCTTAAA
AACACCGGTGAGAGACACGACATGCAAGCTTCCTCCCTTGCATGAACAAA
CGTCAGCATATATAAATGAAGTACTTACCCGCAATCCGTACCTAAAACAG
ATTTCGTTGTGGTGGCTCTTGGACAGCAGTTACTACTCGAATCCGATCTT
CCGCTGTACGTCGCCGTTTTTCTGCGTACGGTCCACCACTTTTTCCGTCT
GCGTCGGCCGTTCGACCTTTTAGTATCCATCAAACGATTGGCTCGTCGTC
GACCAGACTGACTTGTGTATTGTGTATGATTGCATGCTACGTCATCAGTT
GTCATGACGTTGACTTTCCAGCATCATCGTTTAGATAGGAGAAGCACTTT
GATACCCGGTATAGTCTAGTCAAAACGTATCACACACGGATACTGACTGT
AGCATTCATTCAGTCGTATCTACGAGTGCTGGTAATAATACCTCTGATGT
ACTTCTTCTGCCTTCCTGGCATTGCCTTCTATATCAATCAACATGACTTA
TCAGCGGTAGTAATATGTATCACTTGTAGTCGATTTTTCTTGGAACACAC
GAAATGAAAAAAAAATGAGAGGTACGTGTGCTGGGTGTGCATGGGTCCGC
GTGCGGAATGAGTTCGTTTTTTTTCGTTTTCATCAAAAAAACTTGAACAA
TTAAAATTACATGACCACCCCGGTCGAAATATACGACAGACCGATGACAC
AAAAGTGACACAAAAGCGCCCTCTCCTGTGCCGTGCGTTGCCGTTGCCGT
CTCTCAAGTGCACAACACACCGCAGGCAGGCACGTCATAACATACTACGT
TTCGAGATAACGCGCGGGGGATTGGAACCTTCAGCGTACAGCCAGCCCGC
ATCAACGATGATGTCATCCCGGAAAGGTATGTTATGGTGCGTGTACACAG
CAGCAGTAGTGTTTTTTTCCTCTTTATGTAGTACCTTTCCGAGTAGTTCT
TGGATCTTTGCGTACTTTCGTCCTGTCATCGTACCTCCTTGTGTTCACGT
TTCATACATGCATACTACGCACTCGTGCAAACATTTATACATATGTATGA
TTCAACAGTTGTTTTTTTCCCTGTTTTATGACATACGAATTGTTGGCAGG
TTCTTGTTGTTTTGTTTGTATTGTCGTCTAGATTTTCTTCTCCACTGAGC
TGTTGTTGTTGTTGATTCTCACATTAGCTCATCGCCAAAATCTAGCCCGT
GGTCACAAAAAGTGCTGAGCCCTATGAGAGGAAGATCCGAAAAACAGAAA
GAAACTATTCTACAAGGGATTACCCAAGAAAGACCGAAGAAGATACACCT
TCCTACGCGGCGTGCATCACTGAACTACAGCAGTCACAGCAGTACCAACA
TCAAACGTACTTTCAGCGTCGTTCATTTGACTACAGCATCATTTTCAGTC
TCCTCCCGCCCCACTTATAACTAATAACCTGCTGCTACAAGCAGTCAGCA
GGTAGCTGCAGACTACAGCAGTTAGTTGCTCTTGTTTTTTTCCCCCCTCG
CATTAAGGTCTTCCATTACTTCACAGATGATATTTCATACGAAGCGATCA
TGTTTTCTATTGTATCGTTGCAAAAACGTACCGAACCGACGACGGAATAC
CGAATCAATGTAAAGTACGGAGTATACCAGTACGAAGGGCATCATCACCT
GGTACAGAGTACACGTATTTATACAAAAGTATCATTTTCTTCCGTCAAAT
TCGTGAATACATGATGATGAAGAAAAAAGCAAAAGAGCAGTCGAAGTCGG
GGGAGCAGTAACAGACCGGGGCGACGAAAGGGTCGGCCAGAGTGGTCCAT
CGAAAGGAAGAGTCACATGTCCGCCGGACTCATAAAAAAGTGAAAAATCA
ATGATGTATGGTATCTTATTCTTTGTGTTCGCGATACTTCTACTTCGTAT
CATAATAATACTTACTTCGAAGAAGTGTTTTTACACATAACTGCGGCTGT
ATCCGTTGTGTATACTTTTCACTACTCAATCAATACATACTTGTTGCCCT
GTCAACATCAAGACCACCACTCGTCGTCCATAACCCGGATCATGCTCAAC
ATTCTGCTTTTTGCGTCCGCTTCCGCCTTACTTAACCCTCTGCCGTCCCA
AACAGTTCTCAACACCGACGCGTCTCTTGTTCGAGAGGGGCTCATCGGCA
ACACGTTCCCCAATGTTTTGCGATGGAGTCCTCGCATCCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1318:8741..10982+

>mRNA_P-littoralis_Contig1318.5.1 ID=mRNA_P-littoralis_Contig1318.5.1|Name=mRNA_P-littoralis_Contig1318.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1318:8741..10982+ (Pylaiella littoralis U1_48)
GGAACGTCACCTACATGCATTCGTCTCCGACGCCAAGTAACGCGCTTAAA
AACACCGTGCACAACACACCGCAGGCAGGCACGTCATAACATACTACGTT
TCGAGATAACGCGCGGGGGATTGGAACCTTCAGCGTACAGCCAGCCCGCA
TCAACGATGATGTCATCCCGGAAAGTTCTCAACACCGACGCGTCTCTTGT
TCGAGAGGGGCTCATCGGCAACACGTTCCCCAATGTTTTGCGATGGAGTC
CTCGCATCCGA
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