mRNA_P-littoralis_Contig1317.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1317.4.1
Unique NamemRNA_P-littoralis_Contig1317.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.890e-32
Identity = 81/198 (40.91%), Postives = 105/198 (53.03%), Query Frame = 2 
Query:  287 NVFAAFAPSSKPHFVGQRPTTEDINVSTAVTAILVSVL---------------LQPLTGRTDFASRTIFCRARAV--ATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADV---GKPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLLKGGHSAR 820
            +  A  AP      VG+  +T DIN+  A T  +   L               LQP  G  +   R      R V  A  P G V +DI G +  +  G++Y++ FVDS SR  + YGMR K++ L Y ++F+AD+   G   CF M NAGE TS  FV FCD   IRRE+TAP T  QNA VES +WR +KGGH+AR
Sbjct:   70 HALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSQAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNGDGPLGCFRMGNAGEFTSAAFVAFCDAAGIRREYTAPDTPNQNAIVESAIWRAMKGGHAAR 267
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BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.700e-20
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  551 FVDSCSRRGQVYGMRTKAELLVYVQKFIADV---GKPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVESLLWRLLKGGHSAR 820
            F+DS S   + YGMR K + L +VQ+F+AD+   G P CF M N GE     F +FCD   IRRE+ AP T  QNA VES++WR +K GH+AR
Sbjct:    2 FMDSASPWHRGYGMRAKNDTLKFVQRFLADMNGMGTPGCFRMDNGGEFNGSVFTSFCDAAGIRREYAAPDTPNQNAVVESVIWRAMKEGHAAR 94
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BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A822XUS9_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XUS9_NELNU)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-9
Identity = 47/110 (42.73%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  467 ATEPLGTVLLDIAGSF-EASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKF----IADVGKP-KCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 778
            A EPL  +  ++ G   +AS GG KYMV FVD  SR   VY MR K+E L    +F    +A+VGK  +C    N GE TS  F  F   + IR + T P+T QQN   E
Sbjct:  369 AKEPLELIHSNVFGPIKQASIGGMKYMVTFVDDFSRYVWVYFMRQKSETLSKFNEFRKVAVAEVGKRIRCLRTDNGGEYTSGEFSDFLREHQIRHQFTCPNTLQQNGVAE 478
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BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A2I0JIL5_PUNGR (Integrase catalytic domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JIL5_PUNGR)

HSP 1 Score: 55.5 bits (132), Expect = 1.540e-5
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 2 
Query:  461 AVATEPLGTVLLDIAGSF-EASHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 778
            A A EPL  +   + G   E S    +YM+ F+D CS+   VY M+ K+E L    +F   VG     K KC  + N GE+TS++F  +     I R+ T   + QQN   E
Sbjct:   41 ARAKEPLELIHSSVFGRVKEPSIRRMRYMMTFIDDCSKYIWVYFMKEKSETLARFMEFKEKVGAKTGKKIKCLRIDNGGEDTSQKFTDYLRQCKIWRQLTCLFSPQQNGVKE 152
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BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Match: A0A0J7KDP1_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDP1_LASNI)

HSP 1 Score: 55.8 bits (133), Expect = 5.310e-5
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 2 
Query:  470 TEPLGTVLLDIAGSFEA-SHGGAKYMVGFVDSCSRRGQVYGMRTKAELLVYVQKFIADVG-----KPKCFHMHNAGENTSRRFVTFCDGNAIRREHTAPHTGQQNAPVE 778
            T  L  V  D+ G     S GGAKY++ F+D CSR GQ+Y +++K+++   +++++  +      K KC    N  E  +     F     I R  T P++ QQN   E
Sbjct:  475 TAVLDLVHTDLCGPMRIPSIGGAKYILHFIDDCSRWGQIYFLKSKSDVFQALKEYVVMIENQTGKKIKCIQSDNGKEFVNSDIDGFLKERGIVRRLTVPYSPQQNGVAE 583
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1317.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JT91_9PHAE5.890e-3240.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JK88_9PHAE4.700e-2050.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A822XUS9_NELNU1.200e-942.73Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
A0A2I0JIL5_PUNGR1.540e-534.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7KDP1_LASNI5.310e-531.19Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1317contigP-littoralis_Contig1317:11442..12383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4081.Solyc08g062410.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size892
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.41e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size609
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.2041645-UTR-P-littoralis_Contig1317:11441..117241680789602.2041645-UTR-P-littoralis_Contig1317:11441..11724Pylaiella littoralis U1_48UTRP-littoralis_Contig1317 11442..11724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.2170303-CDS-P-littoralis_Contig1317:11724..119061680789602.2170303-CDS-P-littoralis_Contig1317:11724..11906Pylaiella littoralis U1_48CDSP-littoralis_Contig1317 11725..11906 +
1680789602.2250085-CDS-P-littoralis_Contig1317:11956..123831680789602.2250085-CDS-P-littoralis_Contig1317:11956..12383Pylaiella littoralis U1_48CDSP-littoralis_Contig1317 11957..12383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1317.4.1prot_P-littoralis_Contig1317.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1317 11725..12383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1317.4.1

>prot_P-littoralis_Contig1317.4.1 ID=prot_P-littoralis_Contig1317.4.1|Name=mRNA_P-littoralis_Contig1317.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MNVFAAFAPSSKPHFVGQRPTTEDINVSTAVTAILVSVLLQPLTGRTDFA
SRTIFCRARAVATEPLGTVLLDIAGSFEASHGGAKYMVGFVDSCSRRGQV
YGMRTKAELLVYVQKFIADVGKPKCFHMHNAGENTSRRFVTFCDGNAIRR
EHTAPHTGQQNAPVESLLWRLLKGGHSARLDTRRIFPSLDFSAMEHLIFS
GCG
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mRNA from alignment at P-littoralis_Contig1317:11442..12383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1317.4.1 ID=mRNA_P-littoralis_Contig1317.4.1|Name=mRNA_P-littoralis_Contig1317.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=942bp|location=Sequence derived from alignment at P-littoralis_Contig1317:11442..12383+ (Pylaiella littoralis U1_48)
CGCCCGTCTCTTCAGCTGTAGTGCCATTTGATTGTGGTTTCGCTTTGGAC
GCTGCATCGGTAGAAACTTTGCTGCAGATGCTTGATGACCGCCCCACTTT
AGAGTTGCTTGAGCGACACGTGAGCATGCCCTCGACTGATTTTCTGTTCG
ATGAAAGACTGCTGGCCGCTATTCTGCCTGACGGTGATCGTTTTTGTGCG
CGCAACCCTGATTTACAGCAAGAAGAATGACATGCCCTTTTTACTTATGT
CGAAGTTGAGCTTGAGAGTCGCTTTTTGATGGTATGAATGTTTTTGCTGC
TTTTGCTCCGAGTAGTAAGCCTCATTTTGTAGGACAGCGGCCAACCACCG
AGGATATCAATGTTTCCACTGCGGTAACGGCCATCTTGGTCAGCGTTCTC
TTGCAGCCACTGACAGGTCGCACGGACTTCGCCTCACGAACGATCTTTTG
CCGTGCGAGAGCTGTGTGGCGCCAACAGGGCGTTGGGCTTCATGCCCGCA
CCGGACCACATCTAGGGCAACCGAGCCGTTGGGCACGGTGCTGCTAGATA
TCGCGGGGTCTTTTGAGGCGTCGCACGGGGGGGCAAAGTACATGGTCGGC
TTCGTCGACAGCTGTTCTCGACGCGGCCAGGTCTATGGCATGCGCACCAA
GGCGGAGCTCCTCGTCTACGTCCAGAAGTTTATCGCGGACGTCGGGAAAC
CGAAGTGCTTCCACATGCACAACGCCGGCGAAAATACCAGTCGGCGTTTC
GTGACTTTCTGCGACGGAAACGCCATTCGGCGTGAGCACACCGCGCCGCA
CACCGGGCAGCAAAACGCCCCCGTCGAGAGTCTGCTATGGCGTCTTCTCA
AGGGGGGACACTCCGCAAGGCTGGATACACGGCGGATTTTTCCTTCGCTG
GATTTTTCAGCGATGGAGCACCTGATTTTCAGCGGCTGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1317:11442..12383+

>mRNA_P-littoralis_Contig1317.4.1 ID=mRNA_P-littoralis_Contig1317.4.1|Name=mRNA_P-littoralis_Contig1317.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig1317:11442..12383+ (Pylaiella littoralis U1_48)
ATGAATGTTTTTGCTGCTTTTGCTCCGAGTAGTAAGCCTCATTTTGTAGG
ACAGCGGCCAACCACCGAGGATATCAATGTTTCCACTGCGGTAACGGCCA
TCTTGGTCAGCGTTCTCTTGCAGCCACTGACAGGTCGCACGGACTTCGCC
TCACGAACGATCTTTTGCCGTGCGAGAGCTGTGGCAACCGAGCCGTTGGG
CACGGTGCTGCTAGATATCGCGGGGTCTTTTGAGGCGTCGCACGGGGGGG
CAAAGTACATGGTCGGCTTCGTCGACAGCTGTTCTCGACGCGGCCAGGTC
TATGGCATGCGCACCAAGGCGGAGCTCCTCGTCTACGTCCAGAAGTTTAT
CGCGGACGTCGGGAAACCGAAGTGCTTCCACATGCACAACGCCGGCGAAA
ATACCAGTCGGCGTTTCGTGACTTTCTGCGACGGAAACGCCATTCGGCGT
GAGCACACCGCGCCGCACACCGGGCAGCAAAACGCCCCCGTCGAGAGTCT
GCTATGGCGTCTTCTCAAGGGGGGACACTCCGCAAGGCTGGATACACGGC
GGATTTTTCCTTCGCTGGATTTTTCAGCGATGGAGCACCTGATTTTCAGC
GGCTGTGGG
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