mRNA_P-littoralis_Contig1317.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1317.2.1
Unique NamemRNA_P-littoralis_Contig1317.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1317.2.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.980e-13
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  150 VDCALRAWNLLLSSVVDVGMMVRMTADGSPSGGWTIFINYYTPQADDAEKERARAEWYDLRQGLNENPKKFFYRVT 377
            V+  + +WNLL++SV  + ++ ++ ADGSPSGGW IF+NYY P+A  AEKER  ++++ L   + E P+ +F R  
Sbjct:   71 VEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRAR-AEKERLSSQYHGLEMKVGETPQDYFGRFA 145
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BLAST of mRNA_P-littoralis_Contig1317.2.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.860e-11
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:  138 GRIEVDCALRAWNLLLSSVVDVGMMVRMTADGSPSGGWTIFINYYTPQADDAEKERARAEWYDLRQGLNENPKKFFYRVT 377
            G  +V  A+ AWNLL++S+  + ++  + +DGSPSGGW IF+ YY PQA  AEK+R   E++       ENP+++F R +
Sbjct:  187 GDQKVAKAVVAWNLLITSISFMPILSEIVSDGSPSGGWRIFLKYYEPQAK-AEKKRLLKEYHSFAMHAGENPQEYFGRFS 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1317.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE6.980e-1343.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3I1_9PHAE1.860e-1142.50Integrase catalytic domain-containing protein n=5 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1317contigP-littoralis_Contig1317:8943..9325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size383
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.1583993-UTR-P-littoralis_Contig1317:8942..91481680789602.1583993-UTR-P-littoralis_Contig1317:8942..9148Pylaiella littoralis U1_48UTRP-littoralis_Contig1317 8943..9148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.1728196-CDS-P-littoralis_Contig1317:9148..93251680789602.1728196-CDS-P-littoralis_Contig1317:9148..9325Pylaiella littoralis U1_48CDSP-littoralis_Contig1317 9149..9325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1317.2.1prot_P-littoralis_Contig1317.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1317 9149..9325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1317.2.1

>prot_P-littoralis_Contig1317.2.1 ID=prot_P-littoralis_Contig1317.2.1|Name=mRNA_P-littoralis_Contig1317.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MMVRMTADGSPSGGWTIFINYYTPQADDAEKERARAEWYDLRQGLNENPK
KFFYRVTYG
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mRNA from alignment at P-littoralis_Contig1317:8943..9325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1317.2.1 ID=mRNA_P-littoralis_Contig1317.2.1|Name=mRNA_P-littoralis_Contig1317.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=383bp|location=Sequence derived from alignment at P-littoralis_Contig1317:8943..9325+ (Pylaiella littoralis U1_48)
CGAGTATACGTGGAAGAAAGCGGAAGAGGAGGTGACGCTGTTCATGGCGA
GGTTTGAGTCTCTCTCTAGATCTTTGGGTTTCAAGGTTTGTACACAGAGG
TACCAGTAAGTAGGACTCTTGCTGTGCCAAGAGTGGTGGGAGGATAGAAG
TAGACTGTGCTCTGAGAGCGTGGAATCTCCTGCTGAGCAGTGTGGTAGAC
GTAGGCATGATGGTCAGAATGACAGCAGATGGTAGCCCGAGTGGAGGATG
GACTATCTTTATAAACTACTACACCCCGCAGGCTGATGATGCGGAAAAGG
AGAGAGCGCGAGCAGAGTGGTATGATCTCAGGCAGGGGCTAAACGAAAAC
CCAAAGAAGTTTTTCTACAGGGTGACTTACGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1317:8943..9325+

>mRNA_P-littoralis_Contig1317.2.1 ID=mRNA_P-littoralis_Contig1317.2.1|Name=mRNA_P-littoralis_Contig1317.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig1317:8943..9325+ (Pylaiella littoralis U1_48)
ATGATGGTCAGAATGACAGCAGATGGTAGCCCGAGTGGAGGATGGACTAT
CTTTATAAACTACTACACCCCGCAGGCTGATGATGCGGAAAAGGAGAGAG
CGCGAGCAGAGTGGTATGATCTCAGGCAGGGGCTAAACGAAAACCCAAAG
AAGTTTTTCTACAGGGTGACTTACGGT
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