mRNA_P-littoralis_Contig1316.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 125 bits (314), Expect = 4.590e-31 Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 1 RSTLIRRERRSWAAYSKPLLADGTFRSSFRMDHDAFMDLVGMLRPELERNPHMGSLRNGAVPV----GNTLRWLAGGQMHDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPE 336
R +RRERRSW Y+KP++ DGTFR FRMD+ F L MLRP+LERN MG+LRNG +PV LR+LAGG + ++ G+VIA+STAY RVI AIN L+C WPE
Sbjct: 42 RDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPE 157
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.840e-13 Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 3
Query: 336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
E D A + RS+ V+ KCVGAMD LFVR ++P++++ EPN +Y+GHKKGFGMNFQ
Sbjct: 64 EGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 4.420e-13 Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 3
Query: 345 DYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
D ++ A +RRSTNGVI +CVGAMDGLFVR + P + P SFYSGHKK FGMNFQ
Sbjct: 164 DAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.920e-13 Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 3
Query: 336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
E D A + RS+ V+ KCVGA DGLFVR ++P++++ EPN +Y+GHKKGFGMNFQA
Sbjct: 150 EGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 5.300e-12 Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 3
Query: 393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
V+ KCVGAMDGLFVR ++P++++ EPN +Y+GHK GFGMNFQA
Sbjct: 17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQA 60
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 7.790e-12 Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 3
Query: 372 KRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
++RSTN VI CVGAMDGLFV P+ R P FYSGHKKGFGMNFQA
Sbjct: 103 RQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQA 153
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 9.230e-12 Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 3
Query: 393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 521
V+ KCVGAMDGLFVR ++P++++ EPN +Y+GHKKGFGMNFQ
Sbjct: 180 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.580e-10 Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 3
Query: 336 EQTDYDSIAAGLKRRSTNGVIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 524
E D A + RS+ V+ KCVGAMDG FVR ++P++++ EPN +GHKKGFG NFQA
Sbjct: 34 EGEDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 7.080e-10 Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 1 RSTLIRRERRSWAAYSKPLLADGTFRSSFRMDHDAFMDLVGMLRPELERNPHMGSLRNGAVPVGN----TLRWLAGGQMHDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPENRRITTAS 360
R+ L R + W LLA+ F + +RM AF+ L +L P L R+PH ++ G + V N TLR+ AGG MHDI++ ++K++ Y+ V+ AINA L +P + AS
Sbjct: 22 RAPLTVRVKLKWDRELNLLLAESQFEACYRMPAAAFVQLEDLLAPTLHRSPHAW-VQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPTAREAS 144
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 5.560e-7 Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 3
Query: 393 VIAKCVGAMDGLFVRTLRPNSRDTHEPNSFYSGHKKG 503
V+ KCVGAMDGLFVR ++P++++ EPN +Y+GH+KG
Sbjct: 166 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1316.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1316.13.1 >prot_P-littoralis_Contig1316.13.1 ID=prot_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp MDHDAFMDLVGMLRPELERNPHMGSLRNGAVPVGNTLRWLAGGQMHDIKQback to top mRNA from alignment at P-littoralis_Contig1316:36278..36813- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1316.13.1 ID=mRNA_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=536bp|location=Sequence derived from alignment at P-littoralis_Contig1316:36278..36813- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1316:36278..36813- >mRNA_P-littoralis_Contig1316.13.1 ID=mRNA_P-littoralis_Contig1316.13.1|Name=mRNA_P-littoralis_Contig1316.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1316:36278..36813- (Pylaiella littoralis U1_48)back to top |