mRNA_P-littoralis_Contig1316.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1316.8.1
Unique NamemRNA_P-littoralis_Contig1316.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1316.8.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.180e-35
Identity = 81/186 (43.55%), Postives = 104/186 (55.91%), Query Frame = 3 
Query:  207 WRASYSDQPEWAQTPLGCTPEKKKKDHERRVNKAAKACGSVDEKGSAGLSVNEGYLCRLVCLTLSPPLWDLYHISRGK---ISRAEQDAGETGCKHEFYVKLAQGMVDEEWKDSNGNKVSVPSDHSQDDKAPEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHT 755
            WRAS   +PEW     G TPEKKKK    R            + G    + ++   CRLVCLTL P   D Y   +G     +R E D   TG KH F+ ++A+ M     +D NGN +SVP +HS D+ A E L+  L+ LDLEGAA+ L+ E R K+K ++ AF  DLQ RCF+WLKEVR  HT
Sbjct:    3 WRASLGVEPEWKGIRYGVTPEKKKKLRRSR------------QPGQPTPNSSQALCCRLVCLTLHPEFKDDYMCFKGGGEGTARTELDVRATGAKHGFFARVARAMATPTCRDGNGNPLSVPDEHSNDELASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDDGAFYADLQLRCFNWLKEVRGKHT 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1316.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYJ0_9PHAE1.180e-3543.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1316contigP-littoralis_Contig1316:30591..31345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size756
Hectar predicted targeting categoryother localisation
Exons1
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.0585718-UTR-P-littoralis_Contig1316:30590..305981680789602.0585718-UTR-P-littoralis_Contig1316:30590..30598Pylaiella littoralis U1_48UTRP-littoralis_Contig1316 30591..30598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.0685713-CDS-P-littoralis_Contig1316:30598..313451680789602.0685713-CDS-P-littoralis_Contig1316:30598..31345Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 30599..31345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1316.8.1prot_P-littoralis_Contig1316.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1316 30599..31345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1316.8.1

>prot_P-littoralis_Contig1316.8.1 ID=prot_P-littoralis_Contig1316.8.1|Name=mRNA_P-littoralis_Contig1316.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MPMYPLWNVPELRKECTRLAGQSAKGGPRRGLRYGPPTADGDDNVLRQIS
AAKKDDMVDALIKRADWRASYSDQPEWAQTPLGCTPEKKKKDHERRVNKA
AKACGSVDEKGSAGLSVNEGYLCRLVCLTLSPPLWDLYHISRGKISRAEQ
DAGETGCKHEFYVKLAQGMVDEEWKDSNGNKVSVPSDHSQDDKAPEGLRR
QLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHT
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mRNA from alignment at P-littoralis_Contig1316:30591..31345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1316.8.1 ID=mRNA_P-littoralis_Contig1316.8.1|Name=mRNA_P-littoralis_Contig1316.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig1316:30591..31345+ (Pylaiella littoralis U1_48)
GCACCGTCATGCCCATGTATCCACTTTGGAACGTGCCGGAATTGCGGAAA
GAGTGTACCCGGTTGGCCGGGCAGTCCGCCAAGGGCGGACCTCGGCGGGG
GTTGCGGTACGGCCCtCCCACGGCGGACGGCGATGATAACGTTCTACGCC
AGATATCAGCCGCCAAAAAAGACGATATGGTCGATGCCTTGATCAAGCGC
GCGGACTGGCGGGCGAGTTATAGCGACCAACCGGAGTGGGCACAGACGCC
ACTTGGGTGCACGCCCGAAAAAAAAAAGAAGGATCACGAGCGACGGGTGA
ACAAGGCAGCGAAGGCGTGTGGGAGTGTGGACGAAAAGGGCTCGGCTGGA
CTCTCGGTTAATGAGGGATACCTCTGTCGGCTAGTGTGCTTGACGCTGAG
CCCCCCGTTGTGGGATCTGTACCACATTTCCAGGGGTAAGATTAGCCGAG
CTGAGCAAGATGCTGGCGAAACTGGATGTAAGCACGAGTTCTACGTGAAA
CTGGCTCAGGGGATGGTGGATGAAGAATGGAAAGACAGCAACGGGAACAA
GGTCTCCGTGCCGAGCGACCACAGCCAGGACGACAAAGCGCCGGAGGGAC
TCCGTCGTCAATTGCGCTCTCTAGATCTGGAGGGGGCTGCCCGAGGTCTG
AAGAACGAACGTCGTATCAAGTGGAAGAACAACGAGGACGCATTCATGTA
CGACCTGCAGAAACGCTGTTTCGATTGGCTGAAGGAAGTGAGGAAAAACC
ACACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1316:30591..31345+

>mRNA_P-littoralis_Contig1316.8.1 ID=mRNA_P-littoralis_Contig1316.8.1|Name=mRNA_P-littoralis_Contig1316.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig1316:30591..31345+ (Pylaiella littoralis U1_48)
ATGCCCATGTATCCACTTTGGAACGTGCCGGAATTGCGGAAAGAGTGTAC
CCGGTTGGCCGGGCAGTCCGCCAAGGGCGGACCTCGGCGGGGGTTGCGGT
ACGGCCCtCCCACGGCGGACGGCGATGATAACGTTCTACGCCAGATATCA
GCCGCCAAAAAAGACGATATGGTCGATGCCTTGATCAAGCGCGCGGACTG
GCGGGCGAGTTATAGCGACCAACCGGAGTGGGCACAGACGCCACTTGGGT
GCACGCCCGAAAAAAAAAAGAAGGATCACGAGCGACGGGTGAACAAGGCA
GCGAAGGCGTGTGGGAGTGTGGACGAAAAGGGCTCGGCTGGACTCTCGGT
TAATGAGGGATACCTCTGTCGGCTAGTGTGCTTGACGCTGAGCCCCCCGT
TGTGGGATCTGTACCACATTTCCAGGGGTAAGATTAGCCGAGCTGAGCAA
GATGCTGGCGAAACTGGATGTAAGCACGAGTTCTACGTGAAACTGGCTCA
GGGGATGGTGGATGAAGAATGGAAAGACAGCAACGGGAACAAGGTCTCCG
TGCCGAGCGACCACAGCCAGGACGACAAAGCGCCGGAGGGACTCCGTCGT
CAATTGCGCTCTCTAGATCTGGAGGGGGCTGCCCGAGGTCTGAAGAACGA
ACGTCGTATCAAGTGGAAGAACAACGAGGACGCATTCATGTACGACCTGC
AGAAACGCTGTTTCGATTGGCTGAAGGAAGTGAGGAAAAACCACACG
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