mRNA_P-littoralis_Contig1316.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1316.1.1
Unique NamemRNA_P-littoralis_Contig1316.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1316.1.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.290e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 FLLLVKEAAHDLDLPLPLDLDEKINYTTLGTGAKPVLTFTQNPGACWTKFGTLKTEYTKGTQAQFD 198
            F++L K AA  L+LPLPLD+++K+  T+LGTG KP ++F   P ACWTK+ T+K +YTK  Q  +D
Sbjct:  163 FIVLAKAAAKKLELPLPLDIEDKMYLTSLGTGKKPAVSFKDKPRACWTKWETIKRDYTKEIQIIYD 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1316.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE1.290e-1451.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1316contigP-littoralis_Contig1316:913..2010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789602.0101643-CDS-P-littoralis_Contig1316:912..10221680789602.0101643-CDS-P-littoralis_Contig1316:912..1022Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 913..1022 -
1680789602.0242503-CDS-P-littoralis_Contig1316:1916..20101680789602.0242503-CDS-P-littoralis_Contig1316:1916..2010Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 1917..2010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1316.1.1prot_P-littoralis_Contig1316.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1316 913..2010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1316.1.1

>prot_P-littoralis_Contig1316.1.1 ID=prot_P-littoralis_Contig1316.1.1|Name=mRNA_P-littoralis_Contig1316.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
FLLLVKEAAHDLDLPLPLDLDEKINYTTLGTGAKPVLTFTQNPGACWTKF
GTLKTEYTKGTQAQFDM*
back to top

mRNA from alignment at P-littoralis_Contig1316:913..2010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1316.1.1 ID=mRNA_P-littoralis_Contig1316.1.1|Name=mRNA_P-littoralis_Contig1316.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-littoralis_Contig1316:913..2010- (Pylaiella littoralis U1_48)
TTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACC
GTTGGACCTCGACGAGAAGATCAACTACACCACCTTGGGCACAGGTACAT
ATGATGAAAGGGTTGGGGTTGTGGCGACAGGGCTTGTGACAGTTTTACCG
CGGGAGAGTGTTGTCCGGGCGCCCGAGCACCTTCCGCTGATGTTGTTCAG
TTCACATAATAGCGCGGTTATGCCACATATCCTATCTACTCCCTCTGACC
GGAAATATAAGGGCGGTTTGGTCTTTATGCAAAATATATCGCCCAAAACG
TGCAATACAGATGTCGTGAGTTCAATCCCAGGTGTGAACACCTTTTTTTT
TTCGAAAAAACACCTTTTTTTTGTTTTTTTCGATCGGCTTGCCTTCGTTT
TGGTCCAACGAAGTTGCTGATTTTTACCACCGTGAAGCTTTTGCTCCGGT
CAACACCGAAGAAGTCACGAAAACACTTCGAAAAGCGATAGTACACGTAG
CTCAAGTACGCAAAAATACAAAGAAAAAAAAACGAAGAAAAAAACACTTT
TTTTTGCCGCGAAAGAGAGAAAAAACGACACCCCTTCTTCCCTACGGAGC
GCTATGGCAGGGAAATCATTTTTTTCCCGGGGAGGGGGTCGAACGTTACG
ATCCCCTGTTTTTTTTTTTGAAAACCCAGCTGCTTATCATATCCGAGCAT
ATTGTAAAAAAAGGGGGAGAAAACGGCTTGTAGAACACCCCAAAACACCT
CAAACAAGAAACCGCCCTTATATTTCCGGATTTCCAAACCGCCCTTATAT
TTCCGGTCAGAGGGAGTATGTGCTACTGCTTACCCCCAACTGTTTTTCTG
TAGAATGAAACATGCGTAAGTTAAACGTGTCGGACTTGTCCTGAAATTGT
GAATCGATCCCACCATGTTGTTTAGAAAAGTCCTTCGGCGCGTCGATAAC
CCGTTCCCCTCTACGATTCCTTCCGTCTATCTGTACAGGGGCAAAACCCG
TACTCACTTTCACCCAGAATCCAGGTGCATGCTGGACGAAATTTGGGACT
CTCAAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGATATGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1316:913..2010-

>mRNA_P-littoralis_Contig1316.1.1 ID=mRNA_P-littoralis_Contig1316.1.1|Name=mRNA_P-littoralis_Contig1316.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1316:913..2010- (Pylaiella littoralis U1_48)
TTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACC
GTTGGACCTCGACGAGAAGATCAACTACACCACCTTGGGCACAGGGGCAA
AACCCGTACTCACTTTCACCCAGAATCCAGGTGCATGCTGGACGAAATTT
GGGACTCTCAAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGATAT
GTGA
back to top