mRNA_P-littoralis_Contig1316.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1316.7.1
Unique NamemRNA_P-littoralis_Contig1316.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1316.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1316contigP-littoralis_Contig1316:28910..30459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size451
Hectar predicted targeting categoryother localisation
Exons3
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.9579017-CDS-P-littoralis_Contig1316:28909..290351680789601.9579017-CDS-P-littoralis_Contig1316:28909..29035Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 28910..29035 +
1680789601.9710805-CDS-P-littoralis_Contig1316:30019..302391680789601.9710805-CDS-P-littoralis_Contig1316:30019..30239Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 30020..30239 +
1680789601.980218-CDS-P-littoralis_Contig1316:30356..304571680789601.980218-CDS-P-littoralis_Contig1316:30356..30457Pylaiella littoralis U1_48CDSP-littoralis_Contig1316 30357..30457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1316.7.1prot_P-littoralis_Contig1316.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1316 28910..30457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1316.7.1

>prot_P-littoralis_Contig1316.7.1 ID=prot_P-littoralis_Contig1316.7.1|Name=mRNA_P-littoralis_Contig1316.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
VLKLATAGTREIGSLDCGRSGNDGNFDVEQDNFSSIDAQGQQALVSATEG
VHDSSTTTAVCGGTPADGMTGPAASNSAAEAFRPAPVSSVVGGAFAAFTN
AAWSAATPPSTAVPAGSTGGAAAFASVSSPGAYGGASALSASGGTSSPC
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mRNA from alignment at P-littoralis_Contig1316:28910..30459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1316.7.1 ID=mRNA_P-littoralis_Contig1316.7.1|Name=mRNA_P-littoralis_Contig1316.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1550bp|location=Sequence derived from alignment at P-littoralis_Contig1316:28910..30459+ (Pylaiella littoralis U1_48)
GTGTTGAAGCTTGCTACGGCAGGCACACGGGAGATCGGCAGCCTCGACTG
CGGCCGCTCTGGAAATGACGGCAATTTCGATGTCGAGCAAGATAACTTCT
CCTCGATTGACGCTCAGGGGCAACAGGTGGGAAAGACCGGGATTGGAATA
TCATTTGCCATGCCGCATATAAACGGCTTCCGTGGCACACCGGGCCGGGT
AGACCCCGTCTTGGCGGAGCTATCCGAAATTAACATCGCTATTCAGGCTA
AGGGTTATCGATATTGAAAGTATCATCACAAGACAAAAAATATGTTGGCA
TTGTTTTCATGGTGGGTGCGTGCGCGTTGTTTTCGGCGTCATGGAACTGT
ATCGAAATCAGGCTGATTTCAGCGAACGGGGTGCGTGGAAGATAAAACTA
CCGTATATGTATCTATTTTTTTCGCGGCTGCAATCCGTCCCACGGGTGAA
AGGGTGCCGTCGGGAATTGCAAAGTTCGGGGGCGGTGCTGGCATACACCG
CGGAGTCAAACGTGCTTTCCAGCCAACCTCTCTTCTCCCTCACATTTAAC
TTTATTTTTTACGTCACGCCTGACACCCCGCCTCTCCGAATCCTGGACCT
GCCCGGTGAACTGTTCGGCAATCTCTCCTATACTGCAGTCGACGGGCATT
CGCGCCCGTTCGTCACAAAAAACAAAATTACCTTTGCTGCGGTGCTATAG
TCAAGAGGGCATCCCCTGCAAAGCACACTATCGTTGCCGTTAGAGAAGCG
TCCCGTATCCATTTGCCATGCTGCATTTAGGAAAAGTAAACCTCGTCTGG
CACAAGAACGCCCAGCGTGCGTCTGATGCGAACAGTGACGTGTCATTCAA
TCGGGCAAACAGTCACCTAGTATAGTGGTGAGAGCAAgtGCGATGTGAGA
GAAAAAAGCGCACCACGTGTTGTACGTCGTCCGTGTCTGACTTGCGTAGT
ATGGGGTATAATTTGTGGGCAAAATCACCCCCCCCCCTGGCCCCAAGGAA
GACAAGGGTGCGACGGTGCCGCGCGACTGTAAGAGTGACGTGTACAAGTT
GTAGTGATACGTTTCCCAACCGCCATTACTTTCGTTCTATCGCCGCGCCT
ACCCTTGCAGGCGCTCGTGTCGGCCACGGAGGGTGTTCACGACTCGTCGA
CAACCACTGCCGTCTGCGGCGGTACGCCAGCGGATGGCATGACGGGGCCA
GCAGCGAGCAATTCAGCGGCCGAAGCTTTTCGCCCGGCTCCGGTCTCGAG
TGTCGTCGGCGGTGCCTTCGCAGCGTTCACGAATGCTGCTTGGAGCGCCG
CTACCCCCCCTTCCACGGCTGTGCCAGCAGGCACCGTTGGTGCCGCTGCG
GTTTCGCAGTCCCCATCGTCGCCGAGTGAAATTGCTGGCGTGTCGGCGTC
GCTTTGTTCGAGTGCCGCCACTTTGCCACATTTGGCTGGAAATACAGGCA
GCACCGGTGGCGCTGCGGCTTTTGCCTCCGTTTCTTCGCCGGGTGCATAC
GGTGGCGCGTCGGCATTGTCCGCATCCGGCGGCACGTCCTCTCCTTGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1316:28910..30459+

>mRNA_P-littoralis_Contig1316.7.1 ID=mRNA_P-littoralis_Contig1316.7.1|Name=mRNA_P-littoralis_Contig1316.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig1316:28910..30459+ (Pylaiella littoralis U1_48)
GTGTTGAAGCTTGCTACGGCAGGCACACGGGAGATCGGCAGCCTCGACTG
CGGCCGCTCTGGAAATGACGGCAATTTCGATGTCGAGCAAGATAACTTCT
CCTCGATTGACGCTCAGGGGCAACAGGCGCTCGTGTCGGCCACGGAGGGT
GTTCACGACTCGTCGACAACCACTGCCGTCTGCGGCGGTACGCCAGCGGA
TGGCATGACGGGGCCAGCAGCGAGCAATTCAGCGGCCGAAGCTTTTCGCC
CGGCTCCGGTCTCGAGTGTCGTCGGCGGTGCCTTCGCAGCGTTCACGAAT
GCTGCTTGGAGCGCCGCTACCCCCCCTTCCACGGCTGTGCCAGCAGGCAG
CACCGGTGGCGCTGCGGCTTTTGCCTCCGTTTCTTCGCCGGGTGCATACG
GTGGCGCGTCGGCATTGTCCGCATCCGGCGGCACGTCCTCTCCTTGT
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