mRNA_P-littoralis_Contig1314.2.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1314.2.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE) HSP 1 Score: 343 bits (880), Expect = 1.750e-107 Identity = 171/305 (56.07%), Postives = 205/305 (67.21%), Query Frame = 1
Query: 931 EEAGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASIQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDV-----------------------------HDAAKRLRVANCYSCTGLRSPLSAPGTEHFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVTFMPGYASRVCRNFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTCCTSDCAGVEEVLEVDEEPRPGNKEQPD 1758
E G+ ++ G V AT ++I+ DGSYRNRNH SH VNV+AS++ M+PDHRG +SV+D VTFGRHI DAPL PVCALSR+ G C +HGK EDW R G+ P+ DAAKRLR NCYS T LRSPLSAP TE G+ +LCLRL+ +GFWV +FAHDQDAG+G IVR LF D LECLDRAHIQKN+KKA+V F GYASR CR FA+VV +A+E+ C D SIT +EAF E F H+++HLQG H C+S CAG EE + EEPR GN EQPD
Sbjct: 26 EGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTFGRHIGKDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPD 330
BLAST of mRNA_P-littoralis_Contig1314.2.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 356 bits (913), Expect = 3.080e-106 Identity = 170/276 (61.59%), Postives = 204/276 (73.91%), Query Frame = 1
Query: 931 EEAGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASIQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDVHDAAKRLRVANCYSCTGLRSPLSAPGTEHFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVTFMPGYASRVCRNFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTCCTSDCAGVEEVLEVDEEPRPGNKEQPD 1758
E G+ ++ G V AT ++I+ DGSYRNRNH SH VNV+AS++ +PDHRG +SV+D VTFGRHI DAPL PVCALSR+ G C +HGK EDW R G+ P+ DAAKRLR NCYS T LRSPLSAP TE G+ +LCLRL+ +GFWV +FAHDQDAG+G IVR LF D LECLDRAHIQKN+KKA+V F GYASR CR FA+VV +A+E+ C D SIT +EAF E F H+++HLQG H C+S CAG EE + EEPR GN EQPD
Sbjct: 722 EGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRGLMDSVLDQVTFGRHIGEDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEEEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPD 997
BLAST of mRNA_P-littoralis_Contig1314.2.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 295 bits (754), Expect = 1.920e-83 Identity = 157/358 (43.85%), Postives = 224/358 (62.57%), Query Frame = 1
Query: 724 STRVDKVFTETIAENKLKCKREPGRGLVKI-------AHSPGR------DDGGWAICGGRSYRQRHSSGNRGMPHDGRQTRGEEAGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASIQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDVHDAAKRLRVANCYSCTGLRSPLSAPGTEHFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVTFMPGYASRVCRNFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTCCTSDCAGVEEVLEVDEEPRPGNKEQPD 1758
S VD VF+ + +++ K+EPGRG++++ AH+ R + G I G + G+ + RGEE G+ V+ V TP+ +A DGSYRNRNH +H++NV+ S++L E ++RG +++V VTFGRH+ + PVC SR G C +HG +D+K R A V +AA+RLR +NCYS T L SP SAPGTE GV+VL L LL+G+ FAHDQD G+GL+VR + D ECLDR+H+QKNL KA+V F+PG+A RV RNFAY V +++ E +C DGS +R+EAF E F H+++HL+G+H C+ +C+G E+++ + EEPR QPD
Sbjct: 591 SVAVDVVFSREMKKHREGLKQEPGRGVIRVPIEKHYFAHNETRLKELAKEQG--PIKEGHISNTTWTDIAVGLLRS-MEDRGEEPGYKVEGDVVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAVFGMVTFGRHVGKSLQIDPVCVTSRQG-RCPVHGDAQDFKERAHPPATASASVREAAQRLRNSNCYSGTCLTSPHSAPGTESVGVQVLLLTQLLEGWLPTMFAHDQDVGLGLLVRQVTNDAWECLDRSHVQKNLVKAIVKFLPGFAPRVSRNFAYCVAASRKEEEKCEDGSTSRAEAFVEGFAHLVFHLKGNHQYCSPECSGAEKIVAL-EEPRKTIAPQPD 943
BLAST of mRNA_P-littoralis_Contig1314.2.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 5.160e-15 Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 2
Query: 113 EFAELQRDVQEQKKCRRCKKRLLRVTSWEYVRRESLASPYILYGPAVMAMSWSCCSCGALHLDESLPARGKLCRLWSETDAVVRVLGSECPILET 397
E AE DVQ+Q KCRRC++ + R+ WEYVR ESLASP++ G A CSCGA+HL E LP R K +WS ++VV VLG +CP+ ET
Sbjct: 299 ETAEFLEDVQKQIKCRRCQESV-RIGDWEYVRLESLASPFLFPGVAPEVGLAFSCSCGAVHLGEPLPERRKQGVVWSSANSVVEVLGHQCPVRET 392 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1314.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1314.2.1 >prot_P-littoralis_Contig1314.2.1 ID=prot_P-littoralis_Contig1314.2.1|Name=mRNA_P-littoralis_Contig1314.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=366bp MPTGLRPNSTTGSTAGSTSSGSTRVDKVFTETIAENKLKCKREPGRGLVKback to top mRNA from alignment at P-littoralis_Contig1314:2086..5529- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1314.2.1 ID=mRNA_P-littoralis_Contig1314.2.1|Name=mRNA_P-littoralis_Contig1314.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3444bp|location=Sequence derived from alignment at P-littoralis_Contig1314:2086..5529- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1314:2086..5529- >mRNA_P-littoralis_Contig1314.2.1 ID=mRNA_P-littoralis_Contig1314.2.1|Name=mRNA_P-littoralis_Contig1314.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1098bp|location=Sequence derived from alignment at P-littoralis_Contig1314:2086..5529- (Pylaiella littoralis U1_48)back to top |