mRNA_P-littoralis_Contig1311.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1311.12.1
Unique NamemRNA_P-littoralis_Contig1311.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 8.830e-77
Identity = 139/246 (56.50%), Postives = 165/246 (67.07%), Query Frame = 1
Query:    7 QILGRGNCFD-INQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQ--------------ESPVRPTTRRSSATTQPY--RPSGRTNRPFRPPPLLLLCRRVPNQH--WVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            Q+LG+GNCFD + QLS  SKSMA  TFHK+C++FA E+F+EHIYLPTGTY DEVM  + +LG+T A GST VTH GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT               +S V      S  T + Y  R +  T R  R   L+     V N +  WVTL+APSKYP   +D AFS+ LESVRKDVGCF        RILKLR+ YH RE +DNIFFTCCILHN+L
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLI-----VDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNML 274          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 8.280e-75
Identity = 132/233 (56.65%), Postives = 161/233 (69.10%), Query Frame = 1
Query:    4 LQILGRGNCFD-INQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQE----SPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            L++LG+GNCFD + QLS  S+S+A A FHK+C++ A E+F+EHIYLPTGTY DEVM  + +LG T A GST VTH G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT      +  + T R  S   +    S  T R ++   L  +      +    L+  + Y    +D AFS+ LESVRKDV CFFGILK RFRILKLR+ YH RE IDNIFFTCCILHN+L
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYK---LRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 366          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.740e-70
Identity = 129/246 (52.44%), Postives = 161/246 (65.45%), Query Frame = 1
Query:    4 LQILGRGNCF-DINQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVT--------QESPVRPTTRRSSATTQP---------YRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            LQIL RGNCF DI  +S  S   AAATFH++ + FA+E++ EHI+LPTG YQ +VM  Y +LGF+ A GST VTH  WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT         +S +R  T  +     P         Y   G    P++     LL     ++ WVTL+ PSKYP D +D AFSK LESVRKDV CFFGI+K RFRILKL + YH +EDIDN+FFTCCILHN+L
Sbjct:  163 LQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGT---PYQLKGCYLLVDNGYHK-WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNML 404          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 4.120e-67
Identity = 131/239 (54.81%), Postives = 153/239 (64.02%), Query Frame = 1
Query:   85 HKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQ--------------ESPVRPTTRRSSATTQPY--RPSGRTNRPFRPPPLLL---------LC--------RRVPNQH-----WVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            HK+C++FA E+F+EHIYL TGTY DEVM  + +LG T A GST VTH GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT               +S V      S  T + Y  R +  T R  R   L++         LC         ++P+       WVTL+APSKYP   +D AFS+ LESVRKDV CFFGILK RFRILKLR+ YH RE IDNIFFTCCILHN+L
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 484          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.620e-62
Identity = 116/236 (49.15%), Postives = 144/236 (61.02%), Query Frame = 1
Query:    7 QILGRGNCFD-INQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQ--------ESPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            ++LG+G CFD + QLS  SKSMA ATFHK+ ++FA E+F+EHIYLPTGTY DEVM  + +LG T A GST VTH GW MCPFTLGR FTGKEGFPT+A+EVTVDHAGR + V          ++ +R  +  ++  T+     G  +R   P  ++   +RVP                              +  G   GILK RFRILKLR+ YH RE IDNIFFTCCILHN+L
Sbjct:    3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVDHAGRTLAVANGFTGATNDKTTIRYDSGVNNIRTEYKLRQGERHRANAPRMVIDGGQRVP------------------------------RGCGVLLGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 208          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.100e-62
Identity = 119/251 (47.41%), Postives = 149/251 (59.36%), Query Frame = 1
Query:    4 LQILGRGNCF-DINQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPT--GTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQE-----------------SPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQ---HWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            L ILGRGNCF  I Q+S  S       FHK+CK+FA+E+++EHIYLP+      D VM  Y +LGF+ A+GS  VTH GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+                    +R   + +  T   Y   G T         L  C  + +     W  LM P+KYP   +D  FSK LESVRKDV CFFGILK  FRI K+ +AYH +E IDN+FFTCCILHN+L
Sbjct:  103 LTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTT-------TLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNML 346          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.320e-61
Identity = 116/243 (47.74%), Postives = 150/243 (61.73%), Query Frame = 1
Query:    4 LQILGRGNCF-DINQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQ--------------ESPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            LQIL RGN F DI  +S  S    A+TFH++CK FA E+++E++YLPTG    +VM+ Y ++GF  A+GST VTH  WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+              +  V         T Q Y+   +  + F      LL     ++ W TL+ PSK P D  D  FSK LES RKDV C+FGILK RFRI KL + +H +E IDN+FFTCCILHN+L
Sbjct:   88 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK-WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 329          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.150e-60
Identity = 116/243 (47.74%), Postives = 150/243 (61.73%), Query Frame = 1
Query:    4 LQILGRGNCF-DINQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQ--------------ESPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            LQIL RGN F DI  +S  S    A+TFH++CK FA E+++E++YLPTG    +VM+ Y ++GF  A+GST VTH  WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+              +  V         T Q Y+   +  + F      LL     ++ W TL+ PSK P D  D  FSK LES RKDV C+FGILK RFRI KL + +H +E IDN+FFTCCILHN+L
Sbjct:  179 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK-WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 420          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.190e-58
Identity = 118/231 (51.08%), Postives = 141/231 (61.04%), Query Frame = 1
Query:    4 LQILGRGNCFD-INQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQESPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLLLCRRVPNQHWVTLMAPSKYPGD--VDDAAFSKMLESVRKDVGCFFGILKRRFRILKLRLAYHCREDIDNIFFTCCILHNVL 687
            L +LG+GNCFD + QLS  S SMA ATFHK+C++FA E+F+EHI+ PT TY DE M  + +LG T A  ST VTH    MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT        T   +  T  +  SG  +             R  +Q+        K  G        FS +     +DV CFFGILK RFRILKLR+ YH RE IDNIFFTCCI HN+L
Sbjct:  102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGF-----TGAMNDKTVIWYDSGVND------------IRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHEDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNML 315          
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.870e-58
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1
Query:    1 ALQILGRGNCFD-INQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVT 342
            ALQILGRGNCFD I QLSL SK MAAATFHK+CK+FA+E+FEEHIYLPTG+YQDEVM  Y KLG T AIGST VTH GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T
Sbjct:    7 ALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAIT 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1311.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K796_9PHAE8.830e-7756.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE8.280e-7556.65DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE1.740e-7052.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE4.120e-6754.81DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JIW4_9PHAE2.620e-6249.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.100e-6247.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.320e-6147.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.150e-6047.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE1.190e-5851.08DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KH50_9PHAE6.870e-5880.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1311contigP-littoralis_Contig1311:25039..26336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size687
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.51e-48
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size687
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.350251-CDS-P-littoralis_Contig1311:25038..253061680789601.350251-CDS-P-littoralis_Contig1311:25038..25306Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 25039..25306 -
1680789601.3633647-CDS-P-littoralis_Contig1311:25917..263361680789601.3633647-CDS-P-littoralis_Contig1311:25917..26336Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 25918..26336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1311.12.1prot_P-littoralis_Contig1311.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1311 25039..26336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1311.12.1

>prot_P-littoralis_Contig1311.12.1 ID=prot_P-littoralis_Contig1311.12.1|Name=mRNA_P-littoralis_Contig1311.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
ALQILGRGNCFDINQLSLRSKSMAAATFHKYCKNFAKEIFEEHIYLPTGT
YQDEVMDCYRKLGFTTAIGSTGVTHAGWGMCPFTLGRSFTGKEGFPTLAF
EVTVDHAGRAIGVTQESPVRPTTRRSSATTQPYRPSGRTNRPFRPPPLLL
LCRRVPNQHWVTLMAPSKYPGDVDDAAFSKMLESVRKDVGCFFGILKRRF
RILKLRLAYHCREDIDNIFFTCCILHNVL
back to top

mRNA from alignment at P-littoralis_Contig1311:25039..26336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1311.12.1 ID=mRNA_P-littoralis_Contig1311.12.1|Name=mRNA_P-littoralis_Contig1311.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-littoralis_Contig1311:25039..26336- (Pylaiella littoralis U1_48)
GCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACATCAACCAGCTGTC GTTAAGGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTACTGCAAGA ACTTCGCGAAGGAGATATTCGAGGAGCATATCTACCTTCCAACAGGAACG TACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGGTTTTACTACAGC AATCGGTTCTACCGGCGTCACTCACGCCGGCTGGGGCATGTGTCCGTTCA CCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTC GAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCGTCACCCAAGAGTC ACCGGTGCGACCAACGACAAGACGATCGTCCGCTACGACGCAGCCGTACA GACCATCAGGAAGAACAAAGTGTACAAGGATCGAGAATACAAGCTCAGGA AGGCGGATGGCACGTAGTTCACCCGGAAAGGATGCTATTTGATCGTCGAC AACGGCTATCACGAGGTGAGTGTATTGGGGGCGTGGGTAGTATAGAATAT CCCAACGTAGTGCGTGCTCCGTAACGCTTCTGGTTGATGTGAAGTCCGAA AAAAAACACGCCGGTACACCGAAAGCAGACCAAGGCCATGTTTGTCGGTA CTGAATGAGGATCCTTATGGCATGTTGGCCCCGTGCATCGGGCGTCGACC TTACTTACGCAGCGGCACACCAAGGTAACAAACATTTTGCCGCGTTGCGT TCATTCTATTTGTATTTGTTTTTGTGCTGGATCCGTTTGGACGGTTGCGT TCACGTTCTTACATTTCGAGCATACATTACCCCATTTATAATACCAAAGG TTTTAAAAAACAAATCTGCTCAGGGGTGGTCAGATGGTAAATATTGTACT TGGAAGTACAAAGTTGTAGGCATCTGTGTTCCACATGTCCACACGGTTCC TCGTTCCCCCCAAAGAGTTTGATCGTGAAAATATGTGCGTCGGGGCCTGA GGTTTCCAGAGCCTCTCCGTAGCTCACCAGTCGTCCCTTTCGACCCCCTC CCCTGCTGCTGTTGTGCCGTCGTGTGCCAAATCAACACTGGGTCACCCTC ATGGCCCCATCGAAGTACCCGGGTGACGTGGATGACGCGGCCTTCTCCAA GATGCTTGAGAGTGTGCGCAAGGATGTGGGGTGTTTCTTCGGCATTCTGA AAAGGCGCTTCAGAATCCTGAAGCTCCGCCTGGCCTACCACTGCAGGGAA GACATCGATAACATCTTCTTCACGTGCTGCATTCTCCACAACGTGCTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1311:25039..26336-

>mRNA_P-littoralis_Contig1311.12.1 ID=mRNA_P-littoralis_Contig1311.12.1|Name=mRNA_P-littoralis_Contig1311.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig1311:25039..26336- (Pylaiella littoralis U1_48)
GCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACATCAACCAGCTGTC
GTTAAGGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTACTGCAAGA
ACTTCGCGAAGGAGATATTCGAGGAGCATATCTACCTTCCAACAGGAACG
TACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGGTTTTACTACAGC
AATCGGTTCTACCGGCGTCACTCACGCCGGCTGGGGCATGTGTCCGTTCA
CCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTC
GAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCGTCACCCAAGAGTC
ACCGGTGCGACCAACGACAAGACGATCGTCCGCTACGACGCAGCCGTACA
GACCATCAGGAAGAACAAATCGTCCCTTTCGACCCCCTCCCCTGCTGCTG
TTGTGCCGTCGTGTGCCAAATCAACACTGGGTCACCCTCATGGCCCCATC
GAAGTACCCGGGTGACGTGGATGACGCGGCCTTCTCCAAGATGCTTGAGA
GTGTGCGCAAGGATGTGGGGTGTTTCTTCGGCATTCTGAAAAGGCGCTTC
AGAATCCTGAAGCTCCGCCTGGCCTACCACTGCAGGGAAGACATCGATAA
CATCTTCTTCACGTGCTGCATTCTCCACAACGTGCTC
back to top