mRNA_P-littoralis_Contig1311.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1311.8.1
Unique NamemRNA_P-littoralis_Contig1311.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1311.8.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.160e-10
Identity = 44/65 (67.69%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   34 RQAHLRQQEEEAEMLWNESRR--GRDRRRRGYS-SSHVRYD---TLSPPPTRWDHTLSPPHDRRT 210
            RQA LRQQEEEA+M W E+ R  GR R RRGYS SS  RY    TLSPPPTRW HTLSPP D  T
Sbjct:  529 RQACLRQQEEEAQMWWEEAHRERGRGRGRRGYSPSSRARYGYDHTLSPPPTRW-HTLSPPRDHGT 592
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1311.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVK0_9PHAE1.160e-1067.69GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1311contigP-littoralis_Contig1311:15496..16290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.3052835-CDS-P-littoralis_Contig1311:15495..157381680789601.3052835-CDS-P-littoralis_Contig1311:15495..15738Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 15496..15738 -
1680789601.3193328-CDS-P-littoralis_Contig1311:16230..162901680789601.3193328-CDS-P-littoralis_Contig1311:16230..16290Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 16231..16290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1311.8.1prot_P-littoralis_Contig1311.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1311 15496..16290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1311.8.1

>prot_P-littoralis_Contig1311.8.1 ID=prot_P-littoralis_Contig1311.8.1|Name=mRNA_P-littoralis_Contig1311.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
EILKERERHTSRQAHLRQQEEEAEMLWNESRRGRDRRRRGYSSSHVRYDT
LSPPPTRWDHTLSPPHDRRTRYDDTLSPPRDRITRYDDTLSPPRDHRTRC
D
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mRNA from alignment at P-littoralis_Contig1311:15496..16290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1311.8.1 ID=mRNA_P-littoralis_Contig1311.8.1|Name=mRNA_P-littoralis_Contig1311.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig1311:15496..16290- (Pylaiella littoralis U1_48)
GAAATCCTAAAAGAGCGGGAGCGACATACATCAAGGCAGGCACACCTGCG
ACAGCAAGAGGTATCCGAAGGCCTACACAGAGTGCTCAGTAGAAACGACA
CGCTTGGACAAAAGGGAAGAACGAACAAGGGCACACAGGAGGCGAGTGGC
GGGTGGCTCTCGGGCCATCGCCAACGACACACCATTCGTCGTCCGTAGGG
CCATGTTTGTCGAGCTAGGGGCGATTGAAAAATGTCCTCACCCGTGTGTC
CGTGGAGTGTTTTCGGTACATCCTGCCCTTTGGTCGCGTTATTGCCACCA
GATGCGGGCATGTCAGAAACAGTAAACTTGCGACGCATATATAGAACAAC
TCGACAGATTTACAGAGAAGTGAGGCCTATAACGGTATTCGATTCAAAGA
CGAAACAGCTGCTCGTCCACCCAGCGTCTCGTCCATGTATACTCAATTTT
GCTTCCAGACGCAGTGTTTACAGGGTTGCTTCACAGGTGTCACGATTTTC
TCCGACCAATCTCACCCTCATCCGTGCTCGTGCGGACGGCGCCGCGCACC
AGGAGGAAGCAGAGATGTTGTGGAACGAAAGTCGCAGAGGGAGGGACCGG
AGGCGGCGAGGATATTCGTCATCACACGTCCGATACGACACCCTTTCACC
ACCACCCACGCGATGGGACCACACCCTGTCACCACCACACGACCGGAGAA
CAAGATACGACGACACGCTGTCACCACCACGCGACCGGATAACAAGATAC
GACGACACGCTGTCACCACCACGCGACCATAGGACAAGATGCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1311:15496..16290-

>mRNA_P-littoralis_Contig1311.8.1 ID=mRNA_P-littoralis_Contig1311.8.1|Name=mRNA_P-littoralis_Contig1311.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1311:15496..16290- (Pylaiella littoralis U1_48)
GAAATCCTAAAAGAGCGGGAGCGACATACATCAAGGCAGGCACACCTGCG
ACAGCAAGAGGAGGAAGCAGAGATGTTGTGGAACGAAAGTCGCAGAGGGA
GGGACCGGAGGCGGCGAGGATATTCGTCATCACACGTCCGATACGACACC
CTTTCACCACCACCCACGCGATGGGACCACACCCTGTCACCACCACACGA
CCGGAGAACAAGATACGACGACACGCTGTCACCACCACGCGACCGGATAA
CAAGATACGACGACACGCTGTCACCACCACGCGACCATAGGACAAGATGC
GAC
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