mRNA_P-littoralis_Contig1311.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1311.1.1
Unique NamemRNA_P-littoralis_Contig1311.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1311.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1311contigP-littoralis_Contig1311:2..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size364
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.043073-UTR-P-littoralis_Contig1311:1..761680789601.043073-UTR-P-littoralis_Contig1311:1..76Pylaiella littoralis U1_48UTRP-littoralis_Contig1311 2..76 -
1680789601.0743387-UTR-P-littoralis_Contig1311:769..8361680789601.0743387-UTR-P-littoralis_Contig1311:769..836Pylaiella littoralis U1_48UTRP-littoralis_Contig1311 770..836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789601.0525012-CDS-P-littoralis_Contig1311:76..1521680789601.0525012-CDS-P-littoralis_Contig1311:76..152Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 77..152 -
1680789601.061861-CDS-P-littoralis_Contig1311:623..7691680789601.061861-CDS-P-littoralis_Contig1311:623..769Pylaiella littoralis U1_48CDSP-littoralis_Contig1311 624..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1311.1.1prot_P-littoralis_Contig1311.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1311 77..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1311.1.1

>prot_P-littoralis_Contig1311.1.1 ID=prot_P-littoralis_Contig1311.1.1|Name=mRNA_P-littoralis_Contig1311.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MGFQIVNGRQDAVHSKPRFLSYFDTPRNQLKLLRLLQLHSSRSMLRSSRS
IPLLLEATATKTLGYTGGQTDTL*
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mRNA from alignment at P-littoralis_Contig1311:2..836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1311.1.1 ID=mRNA_P-littoralis_Contig1311.1.1|Name=mRNA_P-littoralis_Contig1311.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=835bp|location=Sequence derived from alignment at P-littoralis_Contig1311:2..836- (Pylaiella littoralis U1_48)
GCTCTGCGGGCTGTAATACAACACATCAACCATACGTTCACTGGACAAGT
AAGCGATACGAATACCCATGGGCTTCCAAATTGTCAACGGGAGACAAGAC
GCCGTCCACAGCAAGCCTCGTTTCTTGTCGTACTTTGATACTCCGAGGAA
TCAACTGAAACTGCTTCGCCTCCTTCAACTCCATTCGTCCCGATCCATGC
TTAGGAGCAGCCGGTGAGGGCTCGACTGTGTCTCTCGTACCGCATTTCAT
ACGCTAGAAGATATCAAGCCCCGTTATGTGTGTCAGGCAACAAGGTTTAA
ATCGTTAATCCCGGACGTGCCCCCTGAGGCGATGTTCAGGAAGGAAAGGT
ATATTCTATGACCTGCTGTGATGTTGGATACGACGGTATTGATTATATCT
GATGAATAGTGCGGTAGGTACATGTATAACCGGACAATGTCCAACCTTCA
ATACTTTCAATTCACCACACAGAACACTCCATCATCACACCTGCACGTCG
CATCTGCTCCCGTATGCGCTAGTGCCATGGCGTCTAGAGGTTACTTGAAA
GGTCGCCCCATCTGCGTCGGTACAGTCTCTCGGAATGGAGAGCAAAGACG
CCTTCTTTGCTGAACAGTTCTTACATGTACGCCACCGATCGACACTAACC
CCTTCGCTCCTTTGTCGATGACTCGACCCTGCAGGAGCATCCCCCTTCTC
CTGGAGGCGACGGCAACAAAAACCTTGGGCTACACGGGTGGCCAAACCGA
CACGTTATGAGGCATTGCAAGGTATCCCCAACGACAAGACCTTGTGCGGG
TGGTTGGGAGAGCGCTTTCAACCCCAGATTCCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1311:2..836-

>mRNA_P-littoralis_Contig1311.1.1 ID=mRNA_P-littoralis_Contig1311.1.1|Name=mRNA_P-littoralis_Contig1311.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1311:2..836- (Pylaiella littoralis U1_48)
ATGGGCTTCCAAATTGTCAACGGGAGACAAGACGCCGTCCACAGCAAGCC
TCGTTTCTTGTCGTACTTTGATACTCCGAGGAATCAACTGAAACTGCTTC
GCCTCCTTCAACTCCATTCGTCCCGATCCATGCTTAGGAGCAGCCGGAGC
ATCCCCCTTCTCCTGGAGGCGACGGCAACAAAAACCTTGGGCTACACGGG
TGGCCAAACCGACACGTTATGA
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