mRNA_P-littoralis_Contig1310.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1310.3.1
Unique NamemRNA_P-littoralis_Contig1310.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1310.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1310contigP-littoralis_Contig1310:7854..8463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size610
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.9404616-UTR-P-littoralis_Contig1310:7853..79061680789600.9404616-UTR-P-littoralis_Contig1310:7853..7906Pylaiella littoralis U1_48UTRP-littoralis_Contig1310 7854..7906 +
1680789600.9687915-UTR-P-littoralis_Contig1310:8215..84631680789600.9687915-UTR-P-littoralis_Contig1310:8215..8463Pylaiella littoralis U1_48UTRP-littoralis_Contig1310 8216..8463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.95678-CDS-P-littoralis_Contig1310:7906..82151680789600.95678-CDS-P-littoralis_Contig1310:7906..8215Pylaiella littoralis U1_48CDSP-littoralis_Contig1310 7907..8215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1310.3.1prot_P-littoralis_Contig1310.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1310 7907..8215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1310.3.1

>prot_P-littoralis_Contig1310.3.1 ID=prot_P-littoralis_Contig1310.3.1|Name=mRNA_P-littoralis_Contig1310.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MGENLSTVEPKGRASSEGVEASRIWWGSVPETFVPGGQVAAHAGCEEGAR
VTDPAALLAGAKYGVLGLPRVPDDGLSGVLVTEVVSLDRPHHEAVLAFKE
SV*
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mRNA from alignment at P-littoralis_Contig1310:7854..8463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1310.3.1 ID=mRNA_P-littoralis_Contig1310.3.1|Name=mRNA_P-littoralis_Contig1310.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=610bp|location=Sequence derived from alignment at P-littoralis_Contig1310:7854..8463+ (Pylaiella littoralis U1_48)
TAGTCAACACAGCGGTAGCAGAGGGCGATGAAGTTCGTCGTCCTGTTTCA
GGCATGGGCGAAAATCTGTCAACTGTCGAACCTAAGGGGCGGGCATCATC
TGAGGGGGTAGAAGCAAGCCGAATTTGGTGGGGAAGCGTCCCGGAAACAT
TTGTACCAGGAGGGCAAGTAGCAGCACATGCAGGCTGCGAAGAGGGAGCG
CGGGTGACTGATCCGGCAGCCCTGCTCGCAGGAGCAAAATATGGTGTACT
TGGGCTACCCCGGGTCCCCGACGACGGGTTGAGCGGTGTGTTGGTTACCG
AAGTCGTTTCTCTCGATCGCCCACACCACGAAGCGGTGCTCGCATTCAAA
GAGTCAGTTTGAGTGCGAGGGGCGGCAGCAGTGGGCGAAAGAGAGCGGGT
GTGTGAAACATGCACGGTAGGTATCTGTGAACTCGCTGAAGAAGGCGAGA
CTCGGGCGTCTTGTGGCGCGCGAGGGAGTGCCGAAGAAGCAGATGAGCTG
CAAACAGGGACAATACTAGATACAAACGGTGGCGCGGTGAGTGCTGTTGG
TGAAGGCACCGGCGAGCCTTCACCACCGAGCAGTCAATTTTTGGTGTTGT
GGCGGCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1310:7854..8463+

>mRNA_P-littoralis_Contig1310.3.1 ID=mRNA_P-littoralis_Contig1310.3.1|Name=mRNA_P-littoralis_Contig1310.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1310:7854..8463+ (Pylaiella littoralis U1_48)
ATGGGCGAAAATCTGTCAACTGTCGAACCTAAGGGGCGGGCATCATCTGA
GGGGGTAGAAGCAAGCCGAATTTGGTGGGGAAGCGTCCCGGAAACATTTG
TACCAGGAGGGCAAGTAGCAGCACATGCAGGCTGCGAAGAGGGAGCGCGG
GTGACTGATCCGGCAGCCCTGCTCGCAGGAGCAAAATATGGTGTACTTGG
GCTACCCCGGGTCCCCGACGACGGGTTGAGCGGTGTGTTGGTTACCGAAG
TCGTTTCTCTCGATCGCCCACACCACGAAGCGGTGCTCGCATTCAAAGAG
TCAGTTTGA
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