mRNA_P-littoralis_Contig131.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.128.1
Unique NamemRNA_P-littoralis_Contig131.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5J952_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J952_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.710e-25
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV+FLR FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IGK E+YRP +
Sbjct:  180 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNS 248
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5JFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 8.230e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV FLR FFR+K G+ GEE MR+YFA WSPY +R+VHVE IGK EIYRP +
Sbjct:  122 NAMKRRERFGKRIMGADGVVRFLRSFFREKAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNS 190
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BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.080e-23
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+ AN VV+FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE IGK E+YRP +
Sbjct:  196 NAMKRRERFGKRIMVANGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEIIGKKEVYRPNS 264
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.920e-23
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV+FLR FFR+K G+ GEE MR+YFA WSPYR+R+VHVE I K EIYRP +
Sbjct:  502 NAMKRRERFGKRIMGADGVVSFLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEFISKKEIYRPNS 570
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5KAT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.100e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV+FLR FFR++ G+ GEE+MR+YFA WSPYR+R+VHVE IGK   YRP +
Sbjct:  337 NAMKRRERFGKRIMGADGVVSFLRSFFREEAGSEGEENMRRYFAKWSPYRMRRVHVEFIGKKVTYRPNS 405
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.800e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERF KRI+GA+ VV+FLR FFR+K G+ GEE MR++FA WSPYR+R+VHVE +GK EIYRP +
Sbjct:  228 NAMKRRERFVKRIMGADGVVSFLRSFFREKAGSEGEEGMRRFFARWSPYRMRRVHVEFMGKKEIYRPNS 296
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.490e-21
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ V +FLR FF +K G+ GEE MR+YFA WSPYR+R+VH E IGK EIYRP +
Sbjct:  674 NAMKRRERFGKRIMGADGVFSFLRSFFEEKAGSEGEEGMRRYFAKWSPYRMRRVHFEFIGKKEIYRPNS 742
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.370e-21
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV+F R FFR+K G+ GEE MRKYFA WSPYR+R+VHVE IG  EI RP +
Sbjct:  207 NAMKRRERFGKRIMGADGVVSFWRCFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGNKEISRPNS 275
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5KFH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.560e-21
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  ERFGKRI+GA+ VV+  R FFR++ G+ GEE MR+Y A WSPYR+R+V VE IGK EIYRP +
Sbjct:   80 NAMKWRERFGKRIMGADGVVSSSRSFFREEAGSEGEESMRRYLAKWSPYRMRRVQVEFIGKKEIYRPNS 148
[Close]
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.450e-21
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 3 
Query:    6 NAMKNHERFGKRIVGANKVVNFLRKFFRQKGGN-GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGA 209
            NAMK  E F KRI+GA+ VV+FLR FFR+K G+ G E MRKYFA WSPYR+R+VHVE IGK EIYRP +
Sbjct:  468 NAMKRREIFDKRIMGADGVVSFLRSFFREKAGSEGGEGMRKYFAKWSPYRMRRVHVECIGKKEIYRPNS 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5J952_9PHAE8.710e-2571.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFY7_9PHAE8.230e-2469.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG9_9PHAE2.080e-2369.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE8.920e-2369.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAT3_9PHAE5.100e-2266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F4_9PHAE5.800e-2266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE1.490e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE5.370e-2168.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFH7_9PHAE8.560e-2163.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE9.450e-2168.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:502942..503255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size316
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.8250258-UTR-P-littoralis_Contig131:502941..5029521680789600.8250258-UTR-P-littoralis_Contig131:502941..502952Pylaiella littoralis U1_48UTRP-littoralis_Contig131 502942..502952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.8358355-CDS-P-littoralis_Contig131:502952..5032551680789600.8358355-CDS-P-littoralis_Contig131:502952..503255Pylaiella littoralis U1_48CDSP-littoralis_Contig131 502953..503255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.128.1prot_P-littoralis_Contig131.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 502953..503255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.128.1

>prot_P-littoralis_Contig131.128.1 ID=prot_P-littoralis_Contig131.128.1|Name=mRNA_P-littoralis_Contig131.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MKNHERFGKRIVGANKVVNFLRKFFRQKGGNGEEDMRKYFASWSPYRIRK
VHVEHIGKNEIYRPGAGRYRRNACDVPLCGSEHSEPPSGYHNGRTARHRA
S
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mRNA from alignment at P-littoralis_Contig131:502942..503255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.128.1 ID=mRNA_P-littoralis_Contig131.128.1|Name=mRNA_P-littoralis_Contig131.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=314bp|location=Sequence derived from alignment at P-littoralis_Contig131:502942..503255+ (Pylaiella littoralis U1_48)
CAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGG
GCGAACAAGGTGGTGAACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGG
CAACGGTGAAGAGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTACC
GCATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGG
CCCGGAGCTGGACGGTATAGACGGAACGCGTGTGACGTACCACTTTGCGG
GAGCGAACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGACTGCAA
GACATCGAGCTAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:502942..503255+

>mRNA_P-littoralis_Contig131.128.1 ID=mRNA_P-littoralis_Contig131.128.1|Name=mRNA_P-littoralis_Contig131.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig131:502942..503255+ (Pylaiella littoralis U1_48)
ATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGGGCGAACAAGGT
GGTGAACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGGCAACGGTGAAG
AGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTACCGCATCCGCAAG
GTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGGCCCGGAGCTGG
ACGGTATAGACGGAACGCGTGTGACGTACCACTTTGCGGGAGCGAACATT
CCGAGCCACCAAGCGGCTACCACAACGGACGGACTGCAAGACATCGAGCT
AGT
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