mRNA_P-littoralis_Contig131.114.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE) HSP 1 Score: 277 bits (709), Expect = 2.060e-84 Identity = 153/211 (72.51%), Postives = 163/211 (77.25%), Query Frame = 1
Query: 1 QQAAIPWTAQAFGVKMRCFHPGGSMKDVECGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDVNHWVLMLPPANAGALQIGEELAYWQRAKGAPGRAFVLDVKRAFLVAKKAGAKGA-------TPDAPAVPMEVGKAAAEERTRSLSATPLVMLFSMLSFVGGVATRLPLLLPLA 612
QQAA+PWTAQAFG+KMRCFHPGGSMK VE GASFAGKWSKELIGPL P+GVEPTIYLTM ITSHK AFSSIHEFTETT G L Q RW+P+ NHWVLMLPPANA ALQ+ Q+AKGAP RAFVLDVKRA L+AKKAGA A T ++ AVP EV KA EERTRSLSAT V LFSMLS GGVA RLPLLLPLA
Sbjct: 206 QQAAMPWTAQAFGMKMRCFHPGGSMKHVEGGASFAGKWSKELIGPLKPAGVEPTIYLTMCITSHKQAFSSIHEFTETTV-------GGLRQTRWMPEFNHWVLMLPPANASALQVR------QKAKGAPDRAFVLDVKRAILLAKKAGANAAKVEAEAGTAESTAVPAEVDKAGVEERTRSLSATLFVTLFSMLSAAGGVAIRLPLLLPLA 403
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE) HSP 1 Score: 240 bits (612), Expect = 1.640e-73 Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query: 1 QQAAIPWTAQAFGVKMRCFHPGGSMKDVECGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDVNHWVLMLPPANAGALQ 342
QQAAIPWTAQAFGVKMRCFHPGGSMKDVE GASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRW+PD NHWVLMLPPANAGALQ
Sbjct: 76 QQAAIPWTAQAFGVKMRCFHPGGSMKDVEGGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWMPDFNHWVLMLPPANAGALQ 189
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE) HSP 1 Score: 228 bits (582), Expect = 3.560e-67 Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 1 QQAAIPWTAQAFGVKMRCFHPGGSMKDVECGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDVNHWVLMLPPANAGALQ 342
QQAAIPW AQAFGVKMRCFHPGGSMKDVE GASFAGKWSKEL+ PLNPSGVE TIYLTMSITSHKHAF SIHEFTETTRRWERG DGELHQMRW+PD NHWVLMLPPANAGALQ
Sbjct: 212 QQAAIPWIAQAFGVKMRCFHPGGSMKDVEGGASFAGKWSKELVSPLNPSGVESTIYLTMSITSHKHAFRSIHEFTETTRRWERGVDGELHQMRWMPDFNHWVLMLPPANAGALQ 325
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE) HSP 1 Score: 208 bits (529), Expect = 3.460e-56 Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 3
Query: 1176 FGLDNHTQLVGEWQDFLKNRQHRDGVFSDLCEYIRGKFESIRAKKSNNTAITPWEDCLGNLGLLIDGEPVLSQDFLETLHFKSWHNDEDCLIIGDEGNGIGEGELQALHHAYLVG 1520
FG++ G QDFLKNRQH DGVFS LC+YIRGKFESIRAKKSNNTA+TPWEDCLGNL LLIDGEP+LSQDFLETLHFKSWHND+D LIIGDEGNGIGEGELQALHHAYLVG
Sbjct: 146 FGVEMRCFHPG--QDFLKNRQHHDGVFSVLCQYIRGKFESIRAKKSNNTAMTPWEDCLGNLRLLIDGEPILSQDFLETLHFKSWHNDKDSLIIGDEGNGIGEGELQALHHAYLVG 258
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5KKT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT7_9PHAE) HSP 1 Score: 193 bits (490), Expect = 8.600e-56 Identity = 107/165 (64.85%), Postives = 122/165 (73.94%), Query Frame = 1
Query: 175 MSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWIPDVNHWVLMLPPANAGALQ--IGEELAYWQRAKGAPGRAFVLDVKRAFLVAKKAGAKGATPDAPAVPMEVG-------KAAAEERTRSLSATPLVMLFSMLSFVGGVATRLPLLLPLAAMMMIWMPRL 642
M +TSH+ FSSI EFTETTRR ERG DGEL Q RW+P+ NHWVLMLPPANA LQ EELA+WQR K APGRA +LDVKRA LVA+ A A +A AV EV +AAAEERTRSL+ TP+V LF MLS +GGV TRLPLLLPLA M+M+WMPR+
Sbjct: 1 MCVTSHEQEFSSIDEFTETTRRRERGLDGELRQKRWMPEFNHWVLMLPPANADVLQPQFSEELAFWQRVKEAPGRALMLDVKRALLVAQVARTAAADVEAKAVTAEVXXXXXXXDRAAAEERTRSLTVTPVVRLFFMLSAMGGVTTRLPLLLPLAVMVMMWMPRI 165
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 6.960e-29 Identity = 64/134 (47.76%), Postives = 87/134 (64.93%), Query Frame = 3
Query: 1128 ARKKPH---EPLCKEKQWLFGLDNHTQLVGEWQDFLKNRQHRDGVFSDLCEYIRGKFESIRAKKSNNTAITPWEDCLGNLGLLIDGEPVLSQDFLETLHFKSWHNDEDCLIIGDEGNGIGEGELQALHHAYLVG 1520
++KKP +PL + F + + T EWQ FL++RQHRDGVFS LC++IR ++++IR K S+ + E CL L L +DGEPVL D+ T + SW+N ++ II E NGIGEGELQALHHAY+ G
Sbjct: 739 SKKKPRAPPQPLFTKAPTGFEIGDKTPDAAEWQTFLEDRQHRDGVFSALCKFIRHQYDTIRKKTSDGVGLEYGESCLQRLQLEVDGEPVLFSDYSRTKSYLSWYNTKELDIILLEANGIGEGELQALHHAYMTG 872
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.090e-28 Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 3
Query: 1128 ARKKPHEPLCKEKQWLFGLDNHTQLVGEWQDFLKNRQHRDGVFSDLCEYIRGKFESIRAKKSNNTAITPWEDCLGNLGLLIDGEPVLSQDFLETLHFKSWHNDEDCLIIGDE-GNGIGEGELQALHHAYLV 1517
++KK PL + FGL + T EWQ+FLKNRQ+RDGV S LC+YIR + IR KK+ + E C+ + L IDGEP+LS DF T +KSW+ND D I +E NG+GEGELQALHH Y V
Sbjct: 845 SKKKKSGPLYTRAPYRFGLGDKTPPSSEWQEFLKNRQNRDGVCSVLCQYIRRQLGRIRQKKAAGIQLEWAEHCINEMRLRIDGEPLLSPDFSTTTGYKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQV 975
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.730e-28 Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 3
Query: 1128 ARKKPHEPLCKEKQWLFGLDNHTQLVGEWQDFLKNRQHRDGVFSDLCEYIRGKFESIRAKKSNNTAITPWEDCLGNLGLLIDGEPVLSQDFLETLHFKSWHNDEDCLIIGDE-GNGIGEGELQALHHAYLV 1517
++KK PL + FGL + T EWQ+FLKNRQ+RDGV S LC+YI + IR KK+ + E C+ + L IDGEP+LS DF T +KSW+ND D I +E NG+GEGELQALHH Y V
Sbjct: 351 SKKKKSGPLYTRAPYRFGLGDKTPPSSEWQEFLKNRQNRDGVCSVLCQYIHRQLGRIRQKKAAGIQLEWAEHCINEMRLRIDGEPLLSPDFSTTTGYKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQV 481
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Match: A0A6H5L7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q2_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.840e-19 Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 1176 FGLDNHTQLVGEWQDFLKNRQHRDGVFSDLCEYIRGKFESIRAKKSNNTAITPWEDCLGNLGLLIDGEPVLSQDFLETLHFKSWHNDEDCLIIGDEGNGIGEG 1484
F + + T EWQ FL++RQHRDGVFS LC++IR ++++IR K S+ + E CL L L +DGE VLS D T + SW+N ++ I+ E NGIGEG
Sbjct: 649 FEIRDKTPEAAEWQTFLEDRQHRDGVFSVLCKFIRHQYDTIRKKTSDGVGLEYGESCLQRLQLEVDGESVLSSDCSRTESYLSWYNTKELDIVLLEANGIGEG 751 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig131.114.1 >prot_P-littoralis_Contig131.114.1 ID=prot_P-littoralis_Contig131.114.1|Name=mRNA_P-littoralis_Contig131.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=380bp MRCFHPGGSMKDVECGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKback to top mRNA from alignment at P-littoralis_Contig131:459827..462046+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig131.114.1 ID=mRNA_P-littoralis_Contig131.114.1|Name=mRNA_P-littoralis_Contig131.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2220bp|location=Sequence derived from alignment at P-littoralis_Contig131:459827..462046+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig131:459827..462046+ >mRNA_P-littoralis_Contig131.114.1 ID=mRNA_P-littoralis_Contig131.114.1|Name=mRNA_P-littoralis_Contig131.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig131:459827..462046+ (Pylaiella littoralis U1_48)back to top |