mRNA_P-littoralis_Contig131.112.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.112.1
Unique NamemRNA_P-littoralis_Contig131.112.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.300e-34
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:  418 MPWEDDNALADDQANPRFLKRVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP 621
            MPWEDDNALADDQAN RFL+RVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP
Sbjct:    1 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP 68
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BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.010e-29
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  370 MGLCRKKRVGVGVESGMPWEDDNALADDQANPRFLKRVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP 621
            MGL RKKRVG+G  +GM W+D+NA ADDQAN  FL+ +RE ID +LSSG++EDG+ALGACS+++E+A SFK  LGS DT VILP
Sbjct:    1 MGLSRKKRVGLGTGTGMSWKDNNAFADDQANLLFLESMRERIDAMLSSGTMEDGLALGACSDVVEHALSFKLDLGSGDTVVILP 84
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BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Match: A0A6H5JVX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.450e-16
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2 
Query:   11 GRPGHLTTPIAVPVSYGMQRNFATAPAVGQIQNSSNAIQ 127
            GRPGHLTTP  VP+SYGMQRNFATAPAVGQIQNSSNAIQ
Sbjct:    3 GRPGHLTTPTTVPISYGMQRNFATAPAVGQIQNSSNAIQ 41
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BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.160e-14
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:  439 ALADDQANPRFLKRVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP 621
            A AD QAN RFL+R+RESID VLS GS+ DGV L AC  +I++A+SFK VL S+DTDVILP
Sbjct:    2 AFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVILP 62
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BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.950e-12
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  430 DDNALADDQANPRFLKRVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVIL 618
            +D A+ D QAN  FL+ +RESID VLS  S+ D VALGA   MIE+A+SFK VL S+DTDVIL
Sbjct:    3 NDMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVIL 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE1.300e-3497.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE4.010e-2965.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVX4_9PHAE3.450e-1692.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE5.160e-1467.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI1.950e-1261.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:457718..458929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size622
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.4334238-UTR-P-littoralis_Contig131:457717..4580831680789600.4334238-UTR-P-littoralis_Contig131:457717..458083Pylaiella littoralis U1_48UTRP-littoralis_Contig131 457718..458083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789600.4441648-CDS-P-littoralis_Contig131:458083..4580851680789600.4441648-CDS-P-littoralis_Contig131:458083..458085Pylaiella littoralis U1_48CDSP-littoralis_Contig131 458084..458085 +
1680789600.4535015-CDS-P-littoralis_Contig131:458676..4589291680789600.4535015-CDS-P-littoralis_Contig131:458676..458929Pylaiella littoralis U1_48CDSP-littoralis_Contig131 458677..458929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.112.1prot_P-littoralis_Contig131.112.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 458084..458929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.112.1

>prot_P-littoralis_Contig131.112.1 ID=prot_P-littoralis_Contig131.112.1|Name=mRNA_P-littoralis_Contig131.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MMGLCRKKRVGVGVESGMPWEDDNALADDQANPRFLKRVRESIDVVLSSG
SVEDGVALGACSEMIEYARSFKHVLGSQDTDVILP
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mRNA from alignment at P-littoralis_Contig131:457718..458929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.112.1 ID=mRNA_P-littoralis_Contig131.112.1|Name=mRNA_P-littoralis_Contig131.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1212bp|location=Sequence derived from alignment at P-littoralis_Contig131:457718..458929+ (Pylaiella littoralis U1_48)
AGGGAAATTAGGCCGACCAGGACATCTGACGACGCCAATAGCAGTCCCTG
TTTCCTATGGGATGCAGCGCAACTTTGCAACAGCTCCTGCTGTAGGGCAG
ATCCAAAATTCTAGCAATGCCATTCAGTGAGTTGGACTACCAAGTCGTAC
ACCCACGAAGTTGTGAGGGATCCGGTCAACTCTACGGGTGGTCAACTTGT
GTGAAGTTGAGCTTTGGGGGGGTGGTATATTCCGTCATACATCAGGCGTA
CCGCTCCATTTCGCGAGATATCGACATCCAGGGATTGATCCATTCACTGC
GCACGCTGCAGCCTGGCACATAGATCTTCGGCACTGCGGGCGAGGGAGTG
CTGCACCGGGCTTTGAATGTGAGTGGTCCTTTTGCCATGACTGTCAACGC
CCGCGAGGATGGGCTTTGCTCGATGAAGTGATGTGCGCGCCAAGGAAACC
TGTGTCGACACCCACGCGGGCTGTACAGCGGTACGCTGCTGCGTTGTCGC
AGTGATGTAGTAGAGGATACGCTTGAGTCTATGGGTGACGACCGCCGACA
TAAGTTATGGGTGCTAACGATGATGCTCTATTCAGCACAAATTGCGCAGC
ACATGCGACTGGTTCGTGGTATCGACAGAGATTTCGGAATTTTTTTTTTA
AATTTTGAAAGTCCTTGTCCGCGGTAAACGATGATCCACACCACAGCTCG
CGACAGCACGAACCGAATTCAATATCGCCTCCTCACCTGCTGTGGCCAGT
GGTTCTTATTCTTCGCATCGATGCCTCAATGTGTGCAGTTGTAAGTTTGC
ATTGCGCATGTTTAAGTACCGTGTGTGATGCCCAGCAATGGTTTTCATAT
GCGGAAATGTGTATGTGCGCACTCCTGTTACCGTGTGTTTGTGGCATGCC
GCACCCCGATGTCAACATCGTACAAAAATGGCGGCTGCTGTCGGTGTACT
ATGTAGCAGGATGGGCCTCTGTCGGAAAAAGCGCGTGGGGGTCGGAGTGG
AATCGGGAATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCG
AACCCCCGTTTCTTGAAGCGCGTGAGGGAAAGTATCGATGTCGTGCTCTC
GAGTGGTAGCGTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGA
TCGAATACGCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGAC
GTCATCCTACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:457718..458929+

>mRNA_P-littoralis_Contig131.112.1 ID=mRNA_P-littoralis_Contig131.112.1|Name=mRNA_P-littoralis_Contig131.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig131:457718..458929+ (Pylaiella littoralis U1_48)
ATGATGGGCCTCTGTCGGAAAAAGCGCGTGGGGGTCGGAGTGGAATCGGG
AATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCGAACCCCC
GTTTCTTGAAGCGCGTGAGGGAAAGTATCGATGTCGTGCTCTCGAGTGGT
AGCGTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAATA
CGCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCC
TACCG
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