prot_P-littoralis_Contig131.83.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig131.83.2
Unique Name	prot_P-littoralis_Contig131.83.2
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	260

Homology

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 7.600e-107
Identity = 206/239 (86.19%), Postives = 217/239 (90.79%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRDNARDSRSRSRSPPRRERSRDRR 237
            M+RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYD+DG+RLRVEMSRGKREFGGG  XXXXXXXXXXXXX    XXXXXXX  XXX XXXXXXXXXX           RQTE+RAVVTGLPQSASWQDLKDHMRKAGDVNYADVD+KGGGVVHF+N++GM+YALRKLDGSEFSNRYD ATISVLPHRD+ RDSRSRSRSPPRRERSR+RR
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGXXXXXXXXXXXXXXXXXXXXXXXXYGXXXGXXXXXXXXXXMGPPRGGFGGGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHRDSVRDSRSRSRSPPRRERSRERR 291

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 2.600e-91
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISV 210
            M+RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRARDGYD+DG+RLRVEMSRGKREFGGG  XXXXXXXXXX   G G XXXXXXXXXXXXXXXXXXXXXXXX XXXXXX RQTE+RAVVTGLPQSASWQDLKDHMRKAGDVNYADVD+KGGGVVHF+NR+GM+YALRKLDGSEFSNRYD A ISV
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGXXXXXXXXXXG--GGGXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 4.040e-75
Identity = 139/239 (58.16%), Postives = 167/239 (69.87%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKRE---FGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRD--NARDSRSRSRSPPRRERSR 234
            MAR+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D+RDA+EAVRARDGYD DG RLRVE+SRG+R+    GGG               G+GG          XXXXXX                +QTE+R +VTGLP SASWQDLKDHMRKAG+  Y DVD+KGGG+VHF  RD M+YALRKLDGS+F N ++ + ISVLPHR     RDSRSRSRSP R  R+R
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGG---------------GHGGRMGMPMGGGRXXXXXXGGAGF-----------QQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISVLPHRGVGGGRDSRSRSRSPKRSRRAR 213

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.020e-67
Identity = 125/218 (57.34%), Postives = 151/218 (69.27%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRDNAR 218
            MAR+Y+GNLPM+++EKD+ED+FYKYG+I D+ LK P RPP+F FV FED RDA++AV  RDGY+ DG RLRVE++RG RE                   G+GGXXXXX               XXXXX       RQTE+R +VTGLP SASWQDLKDHMRKAGDV Y DVD++GGG+VH++ R  M+YALRKLD SEF N +D + I VLPHR NAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARE------------------RGFGGXXXXXFDERGGGRGFGAGRGXXXXXGPPMGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRVLPHRANAR 200

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.640e-65
Identity = 122/214 (57.01%), Postives = 148/214 (69.16%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHR 214
            MAR+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV F+D RDA++AVRARDGY+ DG RLRVE++RG R    G  XXXXXXXXX    G G                                 RQTE+R +VTGLP SASWQDLKDHMRKAGDV Y DVD++GGG+VH++ RD M YALRKLD SEF N +D++ I VLPHR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGAR----GPPXXXXXXXXXGQPMGGG---------------------------------RQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRVLPHR 177

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: K7VZN2_MAIZE (Serine/arginine-rich-splicing factor SR34 n=3 Tax=Zea mays TaxID=4577 RepID=K7VZN2_MAIZE)

HSP 1 Score: 178 bits (451), Expect = 2.420e-51
Identity = 101/227 (44.49%), Postives = 133/227 (58.59%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGG---VVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRDNARDSRSRSRSP 227
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FED RDA+EA+  RDGY++DGHRLRVE + G R                    G+GG                                R +E+R +VTGLP SASWQDLKDHMRKAGDV +++V  +GGG   +V ++N D M YA++KLD +EF N +  A I V  +      S SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGR----------GNASSHDRSSGFGGGGGARRGVS-----------------------RHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKRGRSYSRSRSP 202

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: Q64HC3_MAIZE (ASF/SF2-like pre-mRNA splicing factor SRP32 n=10 Tax=Panicoideae TaxID=147369 RepID=Q64HC3_MAIZE)

HSP 1 Score: 178 bits (451), Expect = 2.560e-51
Identity = 101/227 (44.49%), Postives = 133/227 (58.59%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGG---VVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRDNARDSRSRSRSP 227
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FED RDA+EA+  RDGY++DGHRLRVE + G R                    G+GG                                R +E+R +VTGLP SASWQDLKDHMRKAGDV +++V  +GGG   +V ++N D M YA++KLD +EF N +  A I V  +      S SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGR----------GNASSHDRSSGFGGGGGARRGVS-----------------------RHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKRGRSYSRSRSP 202

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A804R7I7_MAIZE (Uncharacterized protein n=6 Tax=Panicoideae TaxID=147369 RepID=A0A804R7I7_MAIZE)

HSP 1 Score: 178 bits (451), Expect = 4.090e-51
Identity = 101/227 (44.49%), Postives = 133/227 (58.59%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGG---VVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRDNARDSRSRSRSP 227
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FED RDA+EA+  RDGY++DGHRLRVE + G R                    G+GG                                R +E+R +VTGLP SASWQDLKDHMRKAGDV +++V  +GGG   +V ++N D M YA++KLD +EF N +  A I V  +      S SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGR----------GNASSHDRSSGFGGGGGARRGVS-----------------------RHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKRGRSYSRSRSP 202

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A7S0I1L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1L9_9CRYP)

HSP 1 Score: 177 bits (448), Expect = 4.720e-51
Identity = 93/223 (41.70%), Postives = 133/223 (59.64%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRG--------KREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRYDNATISVLPHRD 215
            MAR+Y+GNLP+D++E+D++D+FYKYG+I D+++K P RPPAF FV F++  DA++AVR RDG  ++G RLRVEMSRG        KR  GGG                                                   R++++R +++GLP+SASWQDLKD+ R+AG++ Y DVD +GGG+V F+N D  +YA++K D +EFSN +D   I V+  RD
Sbjct:    1 MARIYVGNLPLDIRERDVDDLFYKYGRIRDIEVKTPSRPPAFAFVEFDNLYDAEDAVRGRDGVMFEGARLRVEMSRGTAATYGYDKRGGGGGAGKAPPRNL------------------------------------------RRSDYRVIISGLPKSASWQDLKDYFRQAGEIVYTDVDRQGGGIVEFANEDDRDYAIKKFDDTEFSNPFDRGYIRVMKPRD 181

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BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Match: A0A6U2EED2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2EED2_HEMAN)

HSP 1 Score: 176 bits (445), Expect = 9.430e-51
Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 0

Query:    1 MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGXXXXXXXXXXXXXXXGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFSNRY 203
            MA++Y+GNLP+D + +D+ED+F+KYG+I D+ LK P RPPAF FVTFE + DA++A+R RDG D++G RLRVEMSR     GGG               G  GXXXXXXXXXXXXXX                  R+++FR +++GLP S SWQDLKD MR+AGDV Y DVD +GGGVV FSN+    YA++KLD +EF +R+
Sbjct:    1 MAKVYVGNLPLDCRVRDIEDLFWKYGRIRDIDLKTPSRPPAFAFVTFESTMDAEDAIRGRDGVDFEGQRLRVEMSRAS---GGGF--------------GDRGXXXXXXXXXXXXXXRGGYDDRGPPRGGPARDLRRSDFRVIISGLPTSCSWQDLKDFMRQAGDVIYTDVDRQGGGVVEFSNKSDQEYAVKKLDDTEFKDRF 186

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig131.83.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPT5_ECTSI	7.600e-107	86.19	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KN34_9PHAE	2.600e-91	90.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LB97_ECTSI	4.040e-75	58.16	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CC30_9STRA	2.020e-67	57.34	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YQ88_9STRA	3.640e-65	57.01	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
K7VZN2_MAIZE	2.420e-51	44.49	Serine/arginine-rich-splicing factor SR34 n=3 Tax=...	[more]
Q64HC3_MAIZE	2.560e-51	44.49	ASF/SF2-like pre-mRNA splicing factor SRP32 n=10 T...	[more]
A0A804R7I7_MAIZE	4.090e-51	44.49	Uncharacterized protein n=6 Tax=Panicoideae TaxID=...	[more]
A0A7S0I1L9_9CRYP	4.720e-51	41.70	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A6U2EED2_HEMAN	9.430e-51	52.22	Hypothetical protein n=1 Tax=Hemiselmis andersenii...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..73 e-value: 1.3E-21 score: 87.8 coord: 141..207 e-value: 2.8E-7 score: 40.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 143..202 e-value: 4.5E-11 score: 42.4 coord: 4..71 e-value: 3.6E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 140..215 score: 10.479576
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..77 score: 18.052174
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..141 e-value: 1.6E-24 score: 88.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 142..211 e-value: 3.7E-20 score: 73.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..259
None	No IPR available	PANTHER	PTHR23147:SF153	SERINE/ARGININE-RICH SPLICING FACTOR SR34A ISOFORM X1	coord: 4..241
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..241
None	No IPR available	CDD	cd12339	RRM2_SRSF1_4_like	coord: 140..203 e-value: 1.38866E-26 score: 96.5347
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..203

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig131	contig	P-littoralis_Contig131:363316..371191 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig131.83.2	mRNA_P-littoralis_Contig131.83.2	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig131 361946..371191 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig131.83.2 ID=prot_P-littoralis_Contig131.83.2|Name=mRNA_P-littoralis_Contig131.83.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
MARLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDS
RDADEAVRARDGYDYDGHRLRVEMSRGKREFGGGGGGGGFGGGGYGGGGG
YGGGGGGGGGYGGGYVGYGGGGMGPPRGGGGFGGGRQTEFRAVVTGLPQS
ASWQDLKDHMRKAGDVNYADVDNKGGGVVHFSNRDGMNYALRKLDGSEFS
NRYDNATISVLPHRDNARDSRSRSRSPPRRERSRDRRRSRSRSPPPRDSY
RGRSRSRSR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf