mRNA_P-littoralis_Contig131.40.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig131.40.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI) HSP 1 Score: 1049 bits (2713), Expect = 0.000e+0 Identity = 811/1462 (55.47%), Postives = 924/1462 (63.20%), Query Frame = 1
Query: 1 SMAPAHGGVGDTTTTGGCEPGLRKATASAATAATATGRLSGLAGGGVGAGEVLGLGNGRRG-KNRVTMLGSALDDVENRGDGPRGKVGKGGRDRE-EKLSLPGAKRHIKIIRAMTLGDASAAAVAGGTSASESNANTSSKPNGGDNKSPDPASTLRASSPTGGTLAAXXXXSGYTASTATDASAVATXXXXXXXXXXXXXXXXXXXXAPIEATISLRTVGKTVAFLAKLAAPAAGGREGDSGAFGGGGNMTGGGGTGASYGLRQCWYSAAAAKHISEDTLDKEEIPTEEGEAALALERRLHAPPAIQFVSESRRGGFNKARCIFRRHGSTITYGSTITLQAFHGGILCFNGKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDALFLQMGRHEVMGSSLIMYKEPKPQRGSHISKRKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVGNPVAVPFRGKNMDKAKHTGRWLIFHKDDPEATQGLEVCHLDRIVLMQTWLSLASDRPGDACLKQYGSVDEYCYRKQ-QWRSTKPRREHGXXXXXXXXXXXXARKRGDGAGEGRSSRQGTAT-KSIFAVRPECGWVISGVEDSGSGKRPGGAGGRSSAT----LLEGAATRQLRRSKRARLVVATNAILQMRSNGPSIALKAQAR-GRAQRRRLASLGQKFLRTFLRERARNWLPDRGGDRQLSIVYGPSSPWGKREALRLQREQYQHIEKVTAKAKIVGDVRDPTSFEVARAENGAVATEAKVKQEVWDALMKRYGYREVTDMLALIHSASIIRKAVRSMRQRKWTRKLAKIDPEIVEKVERLRKIQEQRKANMRGG-LNASSTARGTDTATTSATTPPLNSVGEAVDEAFAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSDL-AQGLPRPYEAFLAGSLEKFESGEGNAAERGGARP------QTTGGSGKGGSQERRPWSSGYRSQPKSLEARRSGKGTASGEEDGGRKEERWKEKDQQPRAKGRPKTAGAGSGGVQGVLARMGGYEKSLFQEFRSDDGAGGAVDQQLSRDVVLLDDLRGTLSQVMTWDHTQGGS--DPAXXXXXXXXXXXXXXXXXXXXXXXXXKETLVSPPCP-ADGSPHALGLQDSKTSELSGAAPAKSSSGRQRATDLQPPGLSAADEKAG-TGTDGLVESVPVVLGRRAGDNPGRHDNVDGGVEFINGTSRELWSSPGGRPSKT----GRRVSGGGAKSVADDAEWGIVKEVSNDDAGSTXXXXXATTGSDGSCTEWVRKQQKRITATPLTDRQRMSLLQHVRPSVFGEPHICSQQHLSAVAGLATARPRSAAATASGHARRRRGIPGGYHQPTPRATTARRRSRGGDPQGGFELVGRIHGSNGSSKSSSSIGASKHGGVLVHDGWVAAGEDSLSCVLSVSAGA 4311
S+APAHGGVGDT T +P R+ SA TA A G V+ G GR G +RV LGSALD+VE R D RG+ G+G R ++L+LP KRH+KI+RA+T+GDASAAA G +G P P T ++SS GG + + S A XXXXXXXXXXXXXXXXXXXXAPIE +SLRTVGKTVAFLA LA+P+A GR+GD G FGGGG G GTG++YG RQCWYSAAAAK IS++ + ++ EEG+AAL LERRLHAPPAIQFV+E+RRGGFNK GSTITYGSTITLQAFHGGILCFN KGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGD L LQMGRHEVMGSSLIM+KEP+ +H SKR G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PVAVPFRGKNMDKAKHTGRW+IFHKDDPEATQG EVCHLDR+VLMQTWLSLASDRP DACLKQ GSVD++C R+Q Q RS+ RE RGDGAGE R SRQ KS+FAVRPECGWVISGVEDSGSGKR G LLEGAATRQLRRSK ARL+ AT+ ILQMRSNG SI +AQ QRRRLA L QK LRTF RER+RNWLP RGGDRQLSIVYGPSSPWGKREALRLQREQ++ EKVTAKAKIVGD+R+PT FEV RAENGA+ATEAKVKQEVWDAL+KRYGY+EVTDMLAL+HSAS+IR+AVR+MRQRKWTRK+AKIDPE+VEKVERLRKIQEQRKA M GG ++A+S+ RG D+A + N E D+ A XXXXXXXXXXXXXXXX A++D AQ RPYEA LAGSLEKFE + + +GGS G++ RP SSG + + ++ R GK +EE +EK++Q RAK RPKTAG GSGGVQGVLARMGGYEKS+F+EF DG GGAVDQQLSRDVVLL+DLRGTL+QVM WD TQGG+ DPA +E VSP D SP A S LSG A K++ G+ R GL ++ G G + LVE VPV L G H VDG EF+ T + +SP ++ GRRV G XXXXX SC ++R PLTD +RMS+LQH+RPSVFGEP SQ+ +AV ARPRSAAA A H+ RRGIPGG H PRA+TARR SR G+ + G IGA KH G+LVHDGWVA + SC S S GA
Sbjct: 81 SVAPAHGGVGDTATG---QPVSREMKGSAGTAKVA--------------GRVV-TGKGRAGCGSRVARLGSALDNVETRADEARGRSGRGVRASSGQRLNLPCTKRHVKIVRAITVGDASAAAGNGVGXXXXXXXXXXXXXSG-----PYPC-TPKSSS--GG-----KQVNTISPSPALSXXXXXXXXXXXXXXXXXXXXXXXXXXAPIEGAVSLRTVGKTVAFLANLASPSAAGRDGDGGVFGGGGKTAGVSGTGSAYGPRQCWYSAAAAKQISDEAHEGQDSAEEEGQAALELERRLHAPPAIQFVTETRRGGFNK--------GSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLLLQMGRHEVMGSSLIMHKEPETPGSTHSSKRSGGVGSQASAGGVTGEQQTEDATRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------PVAVPFRGKNMDKAKHTGRWVIFHKDDPEATQGSEVCHLDRVVLMQTWLSLASDRPADACLKQCGSVDDHCSRQQHQSRSSTAGRERSDGGVSGRGGGGRTGARGDGAGEQRGSRQDVVVAKSVFAVRPECGWVISGVEDSGSGKRTGXXXXXXXXXXXXXLLEGAATRQLRRSKSARLITATSVILQMRSNGQSIVRRAQEIFDETQRRRLACLRQKLLRTFRRERSRNWLPKRGGDRQLSIVYGPSSPWGKREALRLQREQHKQFEKVTAKAKIVGDIRNPTPFEVTRAENGALATEAKVKQEVWDALLKRYGYQEVTDMLALMHSASVIRRAVRAMRQRKWTRKMAKIDPEMVEKVERLRKIQEQRKAKMNGGGVSATSSGRGVDSAPSV-----TNGEDEPRDDH---AIAATGPASAGTXXXXXXXXXXXXXXXXSVTATADRGAQRPSRPYEALLAGSLEKFEGDHRHXXXXXXXXXXXXXTAKASGGSLTRGARGGRPLSSGGKPRFNTIGGR--GKDAE--------REESCREKERQTRAKARPKTAGEGSGGVQGVLARMGGYEKSVFREFGG-DGRGGAVDQQLSRDVVLLEDLRGTLTQVMAWDLTQGGAGTDPAAAGSVAAGHGTGGNT----------QEKGVSPDSSLVDESPVAKNHH--AASRLSGVAAVKTN-GKDRRASASSSGLEVSERNVGGAGDENLVEHVPVTLA-------GHH--VDGSDEFLRHTGEDPGASPTATRQRSACPRGRRVVGXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXSC-------KRRTPPAPLTDDERMSMLQHIRPSVFGEPTAFSQRRRAAVTA---ARPRSAAAGAVEHSGHRRGIPGGNHHQPPRASTARRTSRRGESDSVYRGSG--------------IGAPKHRGILVHDGWVAGQGEPSSCAFSTSTGA 1413
BLAST of mRNA_P-littoralis_Contig131.40.1 vs. uniprot
Match: A0A6H5KGT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT2_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.860e-40 Identity = 194/526 (36.88%), Postives = 231/526 (43.92%), Query Frame = 1
Query: 2803 AQGLPRPYEAFLAGSLEKFES----GEGNAAERGG--ARPQTTGGSGKGGSQERRPWSSGYRSQPKSLEARRSGKGTASGEEDGGR-----KEERWKEKDQQPRAKGRPKTAGAGSGGVQGVLARMGGYEKSLFQEFRSDDGAGGAVDQQLSRDVVLLDDLRGTLSQVMTWDHTQG--GSDPAXXXXXXXXXXXXXXXXXXXXXXXXXKETLVSP-PCPADGSPHALGLQDSKTSELSGAAPAKSSS-GRQRATDLQPPGLSAADEKAGTGTD-GLVESVPVVLGRRAGDNPGRHDNVDGGVEFINGTSRELWSSPGGRPSKT--------GRRVSGGGAKSVADDAEWGIVKEVSNDDAGSTXXXXXATTGSDGSCTEWVRKQQKRITATPLTDRQRMSLLQHVRPSVFGEPHICSQQHLSAVAGLATARPRSAAATASGHARRRRGIPGGYHQPTPRATTARRRSRGGDPQGGFELVGRIHGSNGSSKSSSSIGASKHGGVLVHDGWVAAGEDSLSCVLSVSAG 4308
AQ RPYEA LAGSLEKFE G+G+ + G A + + GS G++ RP SSG GK T GGR +EE ++K +Q RAK RPKTAGAGSGGVQGV+ARMGGYEK VM WD TQG G+D A +E VSP P D SP A ++ TS LSG A AK++ +Q GL ++ G D L E VPV L G H VDG E + T + PG P+ T GRRV G XXXXX C ++R PLTD +RMS+LQH+RPSVFGEP SQ+ +AV RPRSAAA A H+ + GIPGGYH PRA+TARR SR G+ + G IGA KH GVLVHDGWVA + SC S S G
Sbjct: 93 AQRPSRPYEALLAGSLEKFEDDHRHGDGSRDDGGSGDATEKASAGSRARGARGGRPLSSG-------------GKPTCRFNTIGGRGKDVEREENCRQKKRQTRAKARPKTAGAGSGGVQGVIARMGGYEK------------------------------------VMAWDLTQGAGGTDVAATGPVAAGHGTGGST----------REIGVSPDPSLVDESPVA---KNHATSRLSGVAAAKTNGKDQQERASASSSGLEVSERNVGGARDENLEEHVPVALA-------GHH--VDGSAELLRHTGED----PGASPTATRRLSDCPRGRRVVGXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXC-------KRRTPPAPLTDDERMSMLQHIRPSVFGEPTAFSQRRRAAVTAT---RPRSAAAGAIEHSGHQGGIPGGYHHQPPRASTARRTSRRGESDSVYRGSG--------------IGAPKHRGVLVHDGWVAGQGEPSSCAFSTSTG 514
BLAST of mRNA_P-littoralis_Contig131.40.1 vs. uniprot
Match: A0A7S2HDC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDC1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.160e-15 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 985 ITYGSTITLQAFHGGILCFNGKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDALFLQMGRHEVMGSSLIM 1206
I YGSTI+LQA HG LC N +ASA+ +P+A TVWN+++L G +RYGD+++LQ GR+E++GSS +M
Sbjct: 3 IYYGSTISLQAHHGNFLCMNSSRNCEASAVKNEPHAQFTVWNVKNLSGTGVMRYGDSVWLQCGRYEILGSSFMM 76
BLAST of mRNA_P-littoralis_Contig131.40.1 vs. uniprot
Match: F0YI78_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI78_AURAN) HSP 1 Score: 83.6 bits (205), Expect = 1.720e-12 Identity = 65/232 (28.02%), Postives = 90/232 (38.79%), Query Frame = 1
Query: 976 GSTITYGSTITLQAFHGGILCFNGKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDALFLQMGRHEVMGSSLIMYK---EPKPQRGSHISKRKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVGNPVAVPFRGKNMDKAKHTGRWLIFHKDDPEATQGLEVCHLDRIVLMQTWLSLASDRPGDAC 1662
G+ + YGS I LQA HGG + N G+ A A+ P LLT+WN+ DL G +RYGD ++LQ R+E++G+S + + E G +GA VG VAVP G + A+ + RW+I H+ P AT G + H D IVL Q L ++S R D C
Sbjct: 172 GAVVYYGSAIALQANHGGYMGLNQHGRVDAVAIRPTPPCLLTLWNMMDLGDVGAIRYGDQVWLQCSRYELLGTSAMPHDVGAEWNAIVGDIAEASRGAPNHGGEQQTGPDWEAYSSSFARERRIARRAAETLAQGGRIRE----------------------------TVGRLVAVPCGGASAVGARASARWVILHRKHPHATIGTHIMHEDDIVLQQEELYVSS-RKKDCC 374 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig131.40.1 >prot_P-littoralis_Contig131.40.1 ID=prot_P-littoralis_Contig131.40.1|Name=mRNA_P-littoralis_Contig131.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1440bp MAPAHGGVGDTTTTGGCEPGLRKATASAATAATATGRLSGLAGGGVGAGEback to top mRNA from alignment at P-littoralis_Contig131:258747..270105+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig131.40.1 ID=mRNA_P-littoralis_Contig131.40.1|Name=mRNA_P-littoralis_Contig131.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11359bp|location=Sequence derived from alignment at P-littoralis_Contig131:258747..270105+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig131:258747..270105+ >mRNA_P-littoralis_Contig131.40.1 ID=mRNA_P-littoralis_Contig131.40.1|Name=mRNA_P-littoralis_Contig131.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4320bp|location=Sequence derived from alignment at P-littoralis_Contig131:258747..270105+ (Pylaiella littoralis U1_48)back to top |