prot_P-littoralis_Contig131.36.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig131.36.1
Unique Nameprot_P-littoralis_Contig131.36.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length104
Homology
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 3.460e-64
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0
Query:    1 MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPEG 103
            MAEVKKKERET VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDP+DPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPF+APEG
Sbjct:    1 MAEVKKKERET-VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 159 bits (402), Expect = 8.000e-49
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 0
Query:    1 MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPEG 103
            MAE KK+     VLDL KYLDQGVRVK QGGREV GVLKG+D LVN+VLD+C+EFIRDPSDPY++T+ETR LGLVVCRGTQVSLISP DGMEEI NPF+A EG
Sbjct:    1 MAERKKEN----VLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.340e-46
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0
Query:    1 MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPE 102
            MA+  KKE   ++LDL KY+DQGVRVK QGGREV G+LKG+D LVN+VLDEC+E++RDP DPY++T++TR LG+VVCRGTQVSLISP DG EEI NPFVA E
Sbjct:   22 MAQASKKE---SILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.050e-44
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 0
Query:    9 RETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPE 102
            R+ ++LDL KY+DQGVRVK QGGREVHGVLKG+D LVN+VLDE +E++RDP DPY++TE+TR LG+VVCRGTQVSLISP DG EEI NPF+  E
Sbjct:    5 RKESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVE 98          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.180e-44
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0
Query:   13 VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPE 102
            VLDL KY+DQGVRVK QGGREVHG+LKGFD LVN+VLDE +EF+RDP DPY++T ETR LGLVVCRG QVSLISP DGMEEI NPF+  E
Sbjct:   10 VLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQME 99          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.770e-43
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 0
Query:    4 VKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVA 100
            V KKE   ++LD+ KY+DQGVRVK QGGREV G LKGFD LVN+VLD+C EF+RDP DPY++T+E+R LG+VVCRGTQVSLISP DG EEI NPF+A
Sbjct:   15 VSKKE---SILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIA 108          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: UPI00145594BD (U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=Asteroidea TaxID=7588 RepID=UPI00145594BD)

HSP 1 Score: 140 bits (353), Expect = 2.500e-41
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPEG 103
            MA+ KKK+   ++LDL KY+D+  RVK QGGREV G+LKGFDPL+N+VLD   E++RDP DPYKLTE+TR++GLVVCRGT V LI P DGME+I NPFV  EG
Sbjct:    1 MAQEKKKKE--SILDLSKYIDKPTRVKFQGGREVTGILKGFDPLLNLVLDGTSEYLRDPDDPYKLTEDTRDIGLVVCRGTSVVLICPADGMEQIANPFVQQEG 101          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: L1JQ55_GUITC (Sm domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ55_GUITC)

HSP 1 Score: 139 bits (351), Expect = 4.610e-41
Identity = 65/95 (68.42%), Postives = 79/95 (83.16%), Query Frame = 0
Query:    8 ERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPE 102
            +++ AVLDL +++DQ VRVK  GGREV G LKGFD LVN+VLDECIE+IRDP DPYKLT ETR+LGL+VCRGT V+L+ P DGM EI NPF++ E
Sbjct:    4 DKKQAVLDLSRHVDQKVRVKFSGGREVEGRLKGFDTLVNLVLDECIEYIRDPDDPYKLTNETRQLGLIVCRGTAVTLVCPCDGMMEIANPFISAE 98          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: G3HFB8_CRIGR (U6 snRNA-associated Sm-like protein LSm7 n=4 Tax=Cricetinae TaxID=10026 RepID=G3HFB8_CRIGR)

HSP 1 Score: 139 bits (351), Expect = 5.530e-41
Identity = 65/99 (65.66%), Postives = 83/99 (83.84%), Query Frame = 0
Query:    1 MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFV 99
            MA+ K+K+++ ++LDL KY+D+ +RVK QGGRE  G+LKGFDPL+N+VLD  IE++RDP D YKLTE+TR+LGLVVCRGT V LI P+DGME I NPFV
Sbjct:    1 MAQDKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 99          
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Match: K3WSH5_GLOUD (Sm domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSH5_GLOUD)

HSP 1 Score: 139 bits (351), Expect = 6.640e-41
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 0
Query:    9 RETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVAPE 102
            R+  +LDL KY+DQ VRVK  GGREVHG LKG+D LVN+VLD+C+EF+RDP+D Y+LTEETR +GLVVCRGT V LISP DG EEI NPF+  E
Sbjct:   16 RKDPILDLGKYIDQPVRVKFHGGREVHGFLKGYDQLVNLVLDDCVEFLRDPNDEYRLTEETRNVGLVVCRGTSVMLISPVDGTEEIPNPFLQQE 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.36.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI3.460e-6497.09Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA8.000e-4977.67Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2CML5_9STRA4.340e-4670.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2ST35_9STRA1.050e-4472.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XWT1_9STRA1.180e-4477.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BSU7_9STRA3.770e-4371.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00145594BD2.500e-4166.02U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=A... [more]
L1JQ55_GUITC4.610e-4168.42Sm domain-containing protein n=1 Tax=Guillardia th... [more]
G3HFB8_CRIGR5.530e-4165.66U6 snRNA-associated Sm-like protein LSm7 n=4 Tax=C... [more]
K3WSH5_GLOUD6.640e-4169.15Sm domain-containing protein n=1 Tax=Globisporangi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..87
e-value: 1.8E-23
score: 93.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 15..87
e-value: 1.3E-21
score: 76.0
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..103
e-value: 3.0E-42
score: 141.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..96
e-value: 2.5E-32
score: 113.0
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 4..102
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 4..102
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 12..98
e-value: 1.60228E-54
score: 162.755
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 16..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:234241..239186 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.36.1mRNA_P-littoralis_Contig131.36.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig131 234241..240943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig131.36.1 ID=prot_P-littoralis_Contig131.36.1|Name=mRNA_P-littoralis_Contig131.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MAEVKKKERETAVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLD
ECIEFIRDPSDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFVA
PEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044641Lsm7/SmG-like
IPR017132Lsm7
IPR010920LSM_dom_sf