mRNA_P-littoralis_Contig131.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.108.1
Unique NamemRNA_P-littoralis_Contig131.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:455005..455231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.7777889-UTR-P-littoralis_Contig131:455004..4550681680789595.7777889-UTR-P-littoralis_Contig131:455004..455068Pylaiella littoralis U1_48UTRP-littoralis_Contig131 455005..455068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.7917004-CDS-P-littoralis_Contig131:455068..4551211680789595.7917004-CDS-P-littoralis_Contig131:455068..455121Pylaiella littoralis U1_48CDSP-littoralis_Contig131 455069..455121 -
1680789595.8006246-CDS-P-littoralis_Contig131:455140..4552311680789595.8006246-CDS-P-littoralis_Contig131:455140..455231Pylaiella littoralis U1_48CDSP-littoralis_Contig131 455141..455231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.108.1prot_P-littoralis_Contig131.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 455069..455231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.108.1

>prot_P-littoralis_Contig131.108.1 ID=prot_P-littoralis_Contig131.108.1|Name=mRNA_P-littoralis_Contig131.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
VNKCELSLAAAPATGGTAAAHKKNSNRIFEKTVVDFIFPMVTLLFDD*
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mRNA from alignment at P-littoralis_Contig131:455005..455231-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.108.1 ID=mRNA_P-littoralis_Contig131.108.1|Name=mRNA_P-littoralis_Contig131.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=227bp|location=Sequence derived from alignment at P-littoralis_Contig131:455005..455231- (Pylaiella littoralis U1_48)
GTAAATAAATGCGAACTCTCACTGGCCGCAGCGCCGGCGACCGGAGGTAC
TGCAGCAGCCCATAAGAAGAATTCCAACAGGATTTTCGAAAGCACCGCTT
TTTAGAAAAGAAACCGTAGTTGATTTTATTTTTCCCATGGTGACTCTGTT
GTTTGATGATTGACAGACAGACGGTGTTGACATCGTTTCAACAGGCTACT
GCTGTAGCGTAATTGTTGATCACTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:455005..455231-

>mRNA_P-littoralis_Contig131.108.1 ID=mRNA_P-littoralis_Contig131.108.1|Name=mRNA_P-littoralis_Contig131.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig131:455005..455231- (Pylaiella littoralis U1_48)
GTAAATAAATGCGAACTCTCACTGGCCGCAGCGCCGGCGACCGGAGGTAC
TGCAGCAGCCCATAAGAAGAATTCCAACAGGATTTTCGAAAAAACCGTAG
TTGATTTTATTTTTCCCATGGTGACTCTGTTGTTTGATGATTGA
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