mRNA_P-littoralis_Contig131.97.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.97.2
Unique NamemRNA_P-littoralis_Contig131.97.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig131.97.2 vs. uniprot
Match: A0A6H5KVL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL7_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.910e-34
Identity = 85/137 (62.04%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:  649 PRDGALSPAELSSPVVFNDLVLILDAPALPPPPWKLPNLPEEMDVSASTDNMTLDSDPSLAPNDCDLCPEFHLSAPWSPRARRSCMGNERRRSSPLGNRPRTFSEYSAGPSSGSSPPSPLLSERSSSVGAGLPSVTW 1059
            P DG   P   ++P VFNDLVLILDAPALPP PWKLPNLPEE D S  T   T D  PS     CDL P FHLSAPWSP   R+      RR SP+ NRPRTFSEYSAGP SG  PP  LL ERS+S G GL  VTW
Sbjct:  124 PDDGR--PETPATPAVFNDLVLILDAPALPPAPWKLPNLPEENDASC-TGGTTTDLSPSRG---CDLSPGFHLSAPWSPSKGRARYD---RRRSPVSNRPRTFSEYSAGPVSGPVPPPSLLHERSTSDGPGLSIVTW 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.97.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVL7_9PHAE3.910e-3462.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:438368..444903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1075
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_002490.1
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.7072096-CDS-P-littoralis_Contig131:438367..4386611680789595.7072096-CDS-P-littoralis_Contig131:438367..438661Pylaiella littoralis U1_48CDSP-littoralis_Contig131 438368..438661 -
1680789595.7212486-CDS-P-littoralis_Contig131:442908..4433821680789595.7212486-CDS-P-littoralis_Contig131:442908..443382Pylaiella littoralis U1_48CDSP-littoralis_Contig131 442909..443382 -
1680789595.729462-CDS-P-littoralis_Contig131:444021..4440931680789595.729462-CDS-P-littoralis_Contig131:444021..444093Pylaiella littoralis U1_48CDSP-littoralis_Contig131 444022..444093 -
1680789595.7370138-CDS-P-littoralis_Contig131:444669..4446721680789595.7370138-CDS-P-littoralis_Contig131:444669..444672Pylaiella littoralis U1_48CDSP-littoralis_Contig131 444670..444672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.7491171-UTR-P-littoralis_Contig131:444672..4449031680789595.7491171-UTR-P-littoralis_Contig131:444672..444903Pylaiella littoralis U1_48UTRP-littoralis_Contig131 444673..444903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.97.2prot_P-littoralis_Contig131.97.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 438368..444672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.97.2

>prot_P-littoralis_Contig131.97.2 ID=prot_P-littoralis_Contig131.97.2|Name=mRNA_P-littoralis_Contig131.97.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=281bp
MLAGTLLCAALATCSMIGWNIMVTERECACRPPHRRRRSYRRRRRRSSLD
RRSCHRASCDRSVEAITATTGTIDTNTNTDTPPRSENGDNVEREEEKEKC
CATATTTITATTTTACPPCAIPSTEPPSVGRCPVSPGIEPRDGALSPAEL
SSPVVFNDLVLILDAPALPPPPWKLPNLPEEMDVSASTDNMTLDSDPSLA
PNDCDLCPEFHLSAPWSPRARRSCMGNERRRSSPLGNRPRTFSEYSAGPS
SGSSPPSPLLSERSSSVGAGLPSVTWGMQEG
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mRNA from alignment at P-littoralis_Contig131:438368..444903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.97.2 ID=mRNA_P-littoralis_Contig131.97.2|Name=mRNA_P-littoralis_Contig131.97.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6536bp|location=Sequence derived from alignment at P-littoralis_Contig131:438368..444903- (Pylaiella littoralis U1_48)
TCGAGTTTTTCCAGTTTTTCGGTGGCCTCTTCACTCACGCTCGAATCGCA
AAGCTCCCTGCCCAAGAAGGGTTCGTCCGGTGAGGTGCATTGGCGTTAGC
AATACGCCCCACAACCAAGGACAAGCAGTGGTTGTATTGGCAGAGGCTGG
GCAGCAAACGGAATTAAAAGCACCACGAGGGAGGATCAGAGAGCTTCGCA
TGTCCCTGTGAGACTCACGACTCATACGATAATGGTGAGCAAGAAGACTT
CACTACGGCTGTGTAGTGATGTATGCAAACACCGCCTGATGACGAGTTGA
TAACCAGCGCCTACACGAAGGAGGTCATCTTCACCATGCACTGCTGTTGG
CCAACACCACTGCTGTTCAGCTCGGCGTTTGTCTCTCTGCTTCGGTTGGC
CATGAGAACTTGGTCAGTTTTTCGCTCCTCATGGGCAAGTTCGCCTTTAT
TTACTGGTCCCTCGGAATCGGGCTCAAGAGTTCGCGGTTGCATCTCTGAG
AGTAAGCTCCTGTTTGCCTATTGGCGGCCGTCACTGGGGTCCTTGTGCAC
CCGCAGGGACCGATTTATCGTTGCGGGAGGGAACACCGCGTTGACTGGTT
CGCGTGTCAGCCGGCGGGAAGCCTTGCGGTATTGATTACTGCAATAATCC
TCACATGTAATCGTACCAGACTTTATTTCCAGCGCAATACTTATCTCTCT
CTCACATGTATCGCTTTGCATGCGTTCGCACACAGCTTGCCCTCTCCCCA
ACGCCAACGCCATCCGCCCCTCTCTGTACACCTCTCCTTCTCCCCTGCTT
GCTTCATCAGCTCGCGGGGACACTACTGTGCGCGGCGCTCGCCACCTGTT
CCATGATTGGCTGGAACATCATGGTAACTGAGGTGCGCCGCAACTTTTGT
CCATATCTACGCGAGTGCGTTCGGCGTCTGCCGGCTAGGATCTCAGCCTC
GAAAGCAACATACATCCGGAGTATGAAAATATCTGAATATTTATACTCAA
GAAGTATACTTCGAGAGTACATATCATATCATACGATGAATCCTCGAGCT
GAATCTCCCCGCCAACCATTATTTTGTTTTTCGTTCGAGACATCACGTCG
ATCTCATCCAGAGCCGATTATTTATTGGCAACGAACTCAAGGTGTATCCG
AATATCCGGATAACCTATACCGCCTAGCCCTTTACCTGATCCGAGGTACT
TCGCACCGTATGATACACCCTGTTGTCTGAGATTTGAAATCCGAGAGAGT
ATTATTTACCTTTCGTGCATGGGCTAAAAAGTCCGCAACATGATCGATCA
ATCAGTGTTGGACAAGACTAATTTCCTCACCTTTTTCCCTTTTTCTCCTG
TCGTGCTGCTGCGTACCGTGCGCCCTCTTGCTTGCTTGCTTCACCCTCGA
CACCCCTCACGCTGTTCACTCCTCTGTTCGATTCAATTTATATATTGCTG
TATGACACCGCACTTCTTTTCGTCGGCTTCGAACCGCGAACCAACGGAAA
CAACTGGATTGAACAAATCAGAGAGAATGCGCCTGTAGGCCGCCGCACCG
CCGCCGTCGATCGTACCGGCGTCGTCGGAGAAGGTCCTCGCTCGATCGCC
GGAGCTGTCACCGTGCGTCCTGCGATCGCTCGGTCGAGGCGATAACAGCA
ACTACCGGTACCATCGACACCAACACCAACACCGACACCCCTCCACGTAG
CGAGAATGGAGACAATGTGGAGAGGGAAGAGGAGAAGGAAAAATGCTGCG
CAACTGCAACCACCACTATTACTGCTACTACTACTACTGCATGTCCACCA
TGCGCGATTCCCTCCACGGAACCGCCATCCGTCGGTCGATGTCCTGTTTC
GCCCGGGATCGAACCGAGAGATGGGGCGTTATCGCCGGCGGAGCTTTCGT
CGCCCGTCGTTTTCAACGACCTCGTCTTAATTCTCGACGCCCCCGCGCTG
CCGCCCCCTCCGTGGAAGCTACCCAACCTGCCCGAGGAGATGGACGTAAG
TGCCACGTGCTGCTGATATCGTACACTTTGGAAATAAAAATAGCAATACA
GGCGCCGAGCTCACCATGCTCTGATGTATGTGCGTGTGTGTCGCAGAGTC
CCGAAATTGGAAAGAGTATTATGAAGTGCGTTGCTCCAGTTATACCGCAC
GTACAACGACAAAGTTTCCAATTTCCACGCGCCATTCTCTCCTCTTCTCC
GTCTCTATTATACATGTGATGCTGTTGTACTCGTGTGTATTTTATTTCAC
GTGATGTGTGACCCCGGCTAAAGCGCTGAAGCACCCACATCGTACCGAAA
GGTGTAGACTGGTGCCCAGAATAATGGGATGAAACACACACACTGGCACG
CCACAGAGGGGTTGCTTAACCCGACTGACATTGTAAACCAAAGGCAAGCA
CCGCAGGAGGAAAGGTGTGGTCAATAAAACAAAATAAAAAATGAAAAAGT
TCGTGTGCGACCTTCCTCCTGTGTGACCACGGCTGAAGCATCCACATCAT
ACCGAAAGGCGTACACTGCTGCCCAGAATAAATGGGACGACACACACACA
TCCATGCATGTTACAACAGAGTTTCATACAATGATGCCTCGGTCACAAGA
GGAGTACGAGTACCTTAATCCCAGGGAGAGGCATCAGTGTCCAGCACTTC
CGGCGTATGTTGCTTGTGTGAGGACCGCGGTGTTCGCCGAAGCAGGACAG
AGTACTGCTTTCCAGGATTCAATTGTTACTTCGAAGTATAAAATTCTATC
CCGAATCCCGTGACCGTGGAAATGGGGCGGGTGTTACGAGCCTATCGAAT
ACTTCGTACTTCGCATATCACTTCCACAGAGAATACTACTACTACTGCTG
CTGTACTTCGAAGTACTTTGTTTCAACCACACTTGCCAGACCGCACAGAG
TTGTGGCGCTCAGAGATGAGAAATGTCAAATTAGGTCGAGGCTTGGTTTC
TAATTTAGGGCCGAAAAACAAACCTCAGTTGTAGTATTTATGAAATGAAG
TTTCTTATTTTTCTTAAAGTTTCCCACGAATTATTTTCTGTTTGATCCAC
TGCCGGTTGCTGACAGCCTGTGCAATGATGCCCTCCCAACATGGAGACAG
GAGGATTGTTGCTCAGGAGATAGATGCTTTTCGATCTGCCAGGGCGACCA
ACTTGCTCAAGCCATCGAAAAATGACGTTGGAAAGTGCAGTAGTGCCATC
ACACCCGTTCAGCAGACAGCGGCGTGGTCCGCGATGCGGGCGCGCGAGGC
CGTGGTGTGGTACCGCGCCGGTGGGGGGCGCCGCATAAACATACTCTATG
CACCCCCCCCCCGGACCAAAACGACCATACCTTCGGGGTGGGGTGCAGGC
GGCAGCATGTGATACGGTATCTGCAGTTTTAAAAGGCTGTTTCTTACCGT
CAACGTTATTTTGGCCTGGCGTTTTGACCCCCCTACGAGAATCCAACCAG
AGAACCCCTCTACCCCCCCCACCCGCAAACAGCCCTATTGCACACATCAT
GCGACAGCACCAACCAGAACTCGGCCCCTAGAACACAGATGCCGATCAAA
CTTGATGGATCGTGTGCTCCTATGTTCTCAAGTTGGCCACAGGAAGTTTG
GTGGCAGTGGGTCGGGGCTGTGGCGAGATTTTGGCGGCGGTGTGTGTTGG
AGATGGGAAAACAGATGAAACGAAATAACGGTCTTCGCTCCTGTTTTTCC
GGCCAAAAAACAGGTTCGGACAGCGTCTTTTTCCCACCGGATTTTCCTAC
CTCAACCCACTCCGCCGCCGAAACCTTGCCACAGCCAAAGCCCACACCCA
CCAAATTTACTGTGGCCAACCTGATGACAGCAGTAGAGCGTACCGTCCAA
CAGTTATAGTCTCGATTGGTGTCCCAGGGGTCGAGTTCTGCTTGGTGCTG
TCTCCTGTTGTGCTCAAAAAGTAGATTTTCCAACTGTTAGGGCTCTCTGT
TATTAGGAAGGGGGAGGTACCTCAAGAGGAGAAACGCAGTGCCAAATAAC
GGAGCCGTAAGAAACGGTCTAAACTGCAAATAGCACCGTGTAGTTTAATT
TGACAATAACTCTTTCTGATCTATGCCGCTCCCGACCAACCTAGCCCTAG
CCCTAACCCTAACCCACACGCCCGACCTCGACCTCTGGGGTGATAGAGTG
CGAAAGGGGCCTCTGCGCGGCTTCGCCGCGTGTTCGGTTGGCGTTCTTGA
AAAAAAGCAGCCGTTGGCCTTTGGCCAATCAGACAGTGTTGTCAAGTTAA
ACTGCACGGTGCTGTTTGCAGCTTAAAACTGCAAATAGGGGCTACCCATG
TGATATTGGGAGGTTTCTTGTTCGCGATACACTTCCCCTGTTATCTGTTT
TCAAAGCTTGGGGCATCGATGGCTCCCGTTTCTCATCGGGATGTTTTTCA
TCTCGACGCTCAGATCGAGGCATGTTTCGTGGACAAGTTTTCTTGTACTT
TTGGCGAAAATCTAAGCCTTTTTTCCACGCTTTTTTTTTCACGGTTCGGA
TATTCCCAAGATTGATTACTTTTATCGGTCGCCCACTCCCCCCAAAAAAA
CAGGGAGCTCAAACGGCCGAAAAGGGTACTTTCTTGAGCGCAACAGCAGT
AGACAGCCCCAAGCAGACCTCGCTCTCGAGGATACCAATCGAGACTAAAA
CTGCTGGTCGAGCGTACGCTCTAGTGTTCTGAGGTAAGCCACAGGAAGTT
TTGCTAGTGTGGGCCTGGCTGTGGCGAGATGTTGGCGGTGGTTTGTCTAT
CCGGTGAAGATGAAAGACGTCGTACATATCATACGAGCCTTTTTTTATCA
TTCTCTTACCGAACAACAGTCTCGAACGTCTTTTATCGTTTTCATCGGAT
TCTCTGTGATACCTCAAATCACATCGCCGCCAAAGTCTCGCCACAGCCGG
AGCCCACACATCCCAATCTTCCTGTGAGGGTTCCTTGTTTCAATTTGGGC
AGGGGGTCTAAAATCCGGACGGAACATGAGGAAGCATGTGTGGCCATGGA
AAGCGTCAATACACACACTTCTTTGTTGCATATTGTGATCTGATCTCAGG
GGAAAGCGAACCAATTTCACTGCAAGTTCCTACTGCTGTGTTGTGGAACT
TTTTTTGTCTGCACATATCATACGGATTACCGATTTATATCCGTACAGTA
GCTAGCACCTGACAGGTATGGACGAGGGCGCGGCCACGTTCGTGGTCTGT
TCACGCCACCACGGCCCTCCGTTGGCCGGTCGTTCGGATTCGCGTTAGGT
CAGGATTAGGTTGGGTTGGGTCGGGTCAGGCAGGTGTGTGTGTGTGACGG
TTAGTGTGCGGAGCTAAAGCTTGAACTTCACCAGACCTGAAAATCCTTTT
CCACAGTTTGAACGGACCTCGACCTCGTTGACCCGCATTGTACAGGGTTT
ATGACCCTTTCGATTAAAGCCTTTTTTTGATGAACGTCATGTACCGGAAG
TCCTGGACGATGCAGAGAATGTAAGGGTTTCCAGTCGAGACGAGCGGCAC
ACTTGTGTGTTTCTGTATCTCCTTCGTAGAGGAGACCCAGCAGCCTCTTG
GTGTCTTTAGACGGACCTTTGGCGAGTGAGAACAACGTAGCAACAACAAC
CACAGAGCCAAACAAAAACGACGACAAAACATGCCTTCTCGGACTTCTGC
GGTGTTTTGGCGCGGGGAAAAATGAAAATGTGTGCACGCATCATGTGTTG
ATACTGACGCCCTTTCGGCCCCTCTACATAATTGGTACCCACCCACAGGT
TCCCTGTTGCTTTCTCCCGGCAAGGTGCGTGTTCTCTCTGATTGATTTGT
CTTATGCTGGGGTTGGACGTGCTGGACATTCGTCTGATACGTATGATACC
TGTCATGGTAACAAGGCTGTCGAAAATTCTGCAACCAGTCGAAAAAAAAC
CCTCGATCCGTTCCTTCCCTGTCTACCATATGTTGTGCAGGCAAACCAGT
ACGTTACATGTAGGTACTGAAAAGGAACGCCCAGAGGCCCCAGGGAACAT
TCCCCGCGGTCTCCAGAAATACCGTCTCTTGTGGGGTTTCCCTCTGTCCA
TTTGACTCGTCCTTTAAATGACAATTTTAATGTCCCGACATCCGAACGTG
TCATTCCGTGCCCACAACGCACTGGAGGACGGATCCAGAAGCGCGTAGCC
TAACTCTCTCCTTCCCTCACCAGCGTCCCAGCTCGCCCGGCTGACCGGCC
TTGATTGATTCATGCCCCCCTTTCCCGCGTCATTTCCAGCAGGTGTCCGC
CTCGACGGACAACATGACGCTGGATTCGGATCCGTCGCTGGCCCCGAACG
ATTGCGACCTTTGCCCGGAGTTCCACCTCAGCGCGCCGTGGTCCCCGCGC
GCGAGACGCAGCTGCATGGGGAACGAACGGCGGCGCAGCAGCCCCCTCGG
CAACCGCCCGAGGACGTTCTCCGAGTACTCGGCGGGCCCCTCGAGCGGCA
GTAGCCCGCCTTCGCCTCTCCTCTCCGAGAGGTCCTCGAGCGTGGGCGCC
GGACTGCCGTCGGTGACGTGGGGGATGCAGGAGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:438368..444903-

>mRNA_P-littoralis_Contig131.97.2 ID=mRNA_P-littoralis_Contig131.97.2|Name=mRNA_P-littoralis_Contig131.97.2|organism=Pylaiella littoralis U1_48|type=CDS|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig131:438368..444903- (Pylaiella littoralis U1_48)
ATGCTCGCGGGGACACTACTGTGCGCGGCGCTCGCCACCTGTTCCATGAT
TGGCTGGAACATCATGGTAACTGAGAGAGAATGCGCCTGTAGGCCGCCGC
ACCGCCGCCGTCGATCGTACCGGCGTCGTCGGAGAAGGTCCTCGCTCGAT
CGCCGGAGCTGTCACCGTGCGTCCTGCGATCGCTCGGTCGAGGCGATAAC
AGCAACTACCGGTACCATCGACACCAACACCAACACCGACACCCCTCCAC
GTAGCGAGAATGGAGACAATGTGGAGAGGGAAGAGGAGAAGGAAAAATGC
TGCGCAACTGCAACCACCACTATTACTGCTACTACTACTACTGCATGTCC
ACCATGCGCGATTCCCTCCACGGAACCGCCATCCGTCGGTCGATGTCCTG
TTTCGCCCGGGATCGAACCGAGAGATGGGGCGTTATCGCCGGCGGAGCTT
TCGTCGCCCGTCGTTTTCAACGACCTCGTCTTAATTCTCGACGCCCCCGC
GCTGCCGCCCCCTCCGTGGAAGCTACCCAACCTGCCCGAGGAGATGGACG
TGTCCGCCTCGACGGACAACATGACGCTGGATTCGGATCCGTCGCTGGCC
CCGAACGATTGCGACCTTTGCCCGGAGTTCCACCTCAGCGCGCCGTGGTC
CCCGCGCGCGAGACGCAGCTGCATGGGGAACGAACGGCGGCGCAGCAGCC
CCCTCGGCAACCGCCCGAGGACGTTCTCCGAGTACTCGGCGGGCCCCTCG
AGCGGCAGTAGCCCGCCTTCGCCTCTCCTCTCCGAGAGGTCCTCGAGCGT
GGGCGCCGGACTGCCGTCGGTGACGTGGGGGATGCAGGAGGGG
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