mRNA_P-littoralis_Contig131.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.10.2
Unique NamemRNA_P-littoralis_Contig131.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig131.10.2 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.320e-9
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 3 
Query:  213 WTFAANSKGEVLWYCPSGGSEDERCGNRPHLQDYWKKHYGSTAKFPADQFTFKAEGAPSSFKRVD---PDKGT 422
            WT+ +  K  VLWYCP GG E +RC NR  LQ Y ++ YG+  + P  QFTF  + AP  ++RVD   PD G+
Sbjct: 1011 WTYGSFDKERVLWYCPPGGREADRCTNREQLQAYLRERYGN-GRVPG-QFTFSGKDAPPHWERVDAHCPDNGS 1081
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BLAST of mRNA_P-littoralis_Contig131.10.2 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.450e-8
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  213 WTFAANSKGEVLWYCPSGGSEDERCGNRPHLQDYWKKHYGSTAKFPADQFTFKAEGAPSSFKRVD---PDKGT 422
            WT+ +  K  VLWYCP GG E +RC +   LQ Y ++ YG+  + P  QFTF  + AP  ++RVD   PD G+
Sbjct: 1037 WTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRERYGN-GRVPG-QFTFSGKDAPPQWERVDARRPDNGS 1107
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L313_9PHAE6.320e-946.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA3_ECTSI8.450e-843.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:88950..93418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1027
Hectar predicted targeting categoryother localisation
Exons2
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.516404-UTR-P-littoralis_Contig131:88949..890921680789595.516404-UTR-P-littoralis_Contig131:88949..89092Pylaiella littoralis U1_48UTRP-littoralis_Contig131 88950..89092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.532339-CDS-P-littoralis_Contig131:89092..895691680789595.532339-CDS-P-littoralis_Contig131:89092..89569Pylaiella littoralis U1_48CDSP-littoralis_Contig131 89093..89569 +
1680789595.5430498-CDS-P-littoralis_Contig131:93013..934181680789595.5430498-CDS-P-littoralis_Contig131:93013..93418Pylaiella littoralis U1_48CDSP-littoralis_Contig131 93014..93418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.10.2prot_P-littoralis_Contig131.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 89093..93418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.10.2

>prot_P-littoralis_Contig131.10.2 ID=prot_P-littoralis_Contig131.10.2|Name=mRNA_P-littoralis_Contig131.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=294bp
MSSRSSGRRQGRHSPRCSPSLTTWTFAANSKGEVLWYCPSGGSEDERCGN
RPHLQDYWKKHYGSTAKFPADQFTFKAEGAPSSFKRVDPDKGTEYEEDEG
QESDGSGGVGGGDGGGSSSGGSGGGGGGREGGESTSSSHFTAGQGQNKST
GSSSPPNSKERRGETSQDAGTGAAASDTAASPLGGAEAGESSDDDASCSA
EMPPRCVPGREDDGEGGGLALSNASSPEDQEDGRSIGSSSTAEEAEEAGD
DSDGPEKFSTTQLDDGGGAEEAEPAQLESAGPEPEPVISPGDIG
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mRNA from alignment at P-littoralis_Contig131:88950..93418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.10.2 ID=mRNA_P-littoralis_Contig131.10.2|Name=mRNA_P-littoralis_Contig131.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4469bp|location=Sequence derived from alignment at P-littoralis_Contig131:88950..93418+ (Pylaiella littoralis U1_48)
CGGGAAGGTAACCCTGTGCGAGGCTCAGCTGTGAATCTGTCGAATCACTC
GTGGTGAGGGTAAGGAGCGCGTGGTGGTGAGGTAAAGAAGTAGGCTTCCA
AACTCAGAGGAGGGCTTTTGATGACCGAAAGGGGTGCTGCGTCATGTCAT
CGCGTTCCTCGGGGAGGCGGCAGGGCAGGCACAGCCCTCGTTGTTCTCCA
TCACTAACAACTTGGACGTTTGCTGCTAACAGCAAAGGCGAAGTGCTGTG
GTACTGTCCTTCTGGTGGTAGTGAAGATGAGAGGTGCGGCAACCGGCCAC
ACCTTCAAGACTATTGGAAAAAACACTATGGCAGCACGGCGAAATTCCCT
GCTGACCAGTTCACTTTCAAGGCAGAGGGTGCCCCCTCTAGTTTCAAGAG
AGTCGATCCAGACAAGGGAACGGAGTACGAAGAGGACGAAGGTCAAGAGA
GCGACGGCAGTGGTGGTGTTGGTGGAGGTGATGGCGGCGGAAGTAGTAGT
GGTGGTAGTGGCGGAGGAGGAGGAGGAAGAGAAGGAGGAGAAAGCACCAG
TTCTAGCCATTTCACCGCAGGACAGGGCCAAAACAAGAGCACAGGCAGCT
CATCGCCGCCAAACAGCAAGGTGAGCAACGGCGGACCCAATACAGCAATA
GGACAGTAGTACGAGGTATGAGGTACACAGCAATTGCGCAGGTATTATCA
GTAGGTACTTCAAGCAGAGAGTACCGGTGCTGTTATCGGACCCTGAAACC
ATACTCCATATCTTGTACTTCCGCAGCTCTCCGAAAACGTCTGCCACAAA
GCTACAGCTGTAAGGCTGGATCTTATGGTCCACGATGTTGGGCCAAGAAT
TTTGAAAAATAAAAACATCGTGGAAAAGTCACCTTGTGGACTCGGATGGT
GGCGATTTAGAATTTTAAATATTGTGGACCAACATCGTGGACCGTGTTCC
ACGGATGTTTGGCCCAACATCCGTGCCTCGGCATCCACGAATTTTGAGCC
AAGGATGTTGAGCTATGTTTGTTTAAATCCACAAAGTGGGATTGCGCCGC
ATACCCGAGCTGTTCTATTGTGAGCGCACACAAGCTCGGGCGCACGAACA
ACAGTACCTACCACACCACAAACCCACACCCGCCGCACGATGGAGCCTGC
TTCGAGCGTAGGAGACAGCGAACGACATGCGGAGCTCGTCGCTGTTCTGT
TATCAGCAATGTGGAGACTTTGATTGATATTTTTCATCCTCCTGTTGAGT
ATACTGCTGCTGCGTACCCATTCCGCGGACGGACGTGGTGACCTCTAATT
CAACGATTCCGGCATGGACGCCTGCTACTGCTGAACAGCAGCAGTACTTA
TGTTGTGCGCGGAAGCACCAGTGTATGTGTGTGGCGTTCCGTGCTACGGT
GGTCGTGATGAGAGCGAGTGAGTGTGTCTTGTGCTGCTGTGCGCGGCCCT
CCTCCTCCGCTGTATTATTATGCGCAAAGAAAGCCTGTGTCCCTGTCGCA
GCTGCACGCTTCTCGGAACAATACAAAAAAAACAGGCCTTGCCAAAGTCC
GTGCTCACAATAACCCGTGTTTCCCATAATATGGGCTGTATGTTTTTTCG
GCCCACGGATGTTGCCCTCATATGTTTAAAGATCCTTTGGCCAACATCCG
TGGACCATAAGATCCAGCCTAAGGCGGTGAACATCCATCGTTTGAGTTGG
TTGGCACCCTCCCTTTTTCTCCCTGTGGGGGAATCAAGCTTTTTTTTTCT
CTCGAAAGACATTACTGCTGTACACGGTAAAGTATTTCGTTTGACGGGGA
TCAAAAGCAGACTTGCTTACAACAACAACGCAAGGTGTTTACCACAGGTG
CCGAAGGTAGAATTAACTCTGAGTCAACTCTGATTCATTTGAGGCTATCC
AATGACTCGATGTACCACAAAGAACCAGAGTACCAGAGTACATTACCAAA
ATTTCAGATGACTCGATGTGCCACAGAGAACCAGAGCACGAAAAGTTCAA
ACGACTCGATGTACGACAGAGTACCAGGTACCAGAATACCAAAAGTTCAA
ATGACTCGATGTACCGCAGAGTACCATAGCATCAAAAGCTCAAATGACTC
GATGTACCACAGAATATCATACCAGAGTACCGGAAGTCCAAATGTCTCGA
TGTACCACAGAGTCCCAGGGTACAGTACCAACATTTGACGAAGCGATGCC
GTTCGTGAACTCGGACATGCCTGCGGATGAAACTTGTGTGGGGGGTGTCT
CTCATGACGAACCGGATGATTGTGGATTATTCTGCTGACTGAGTTCCTCT
TTGAAGGTTTACTTATTATCTTATTATCCTGGTATTCAAATGAGCATGTA
TTTCATCGGCCGTGACGAGTTGTAACCTTTTGTGCCGATTAGATGGATCT
ATAACACTACTACGCAGTTTTGGTTTTTGTCTTTTGTGATTTTTTGTGCA
CGCGTTCATGTTGCATCTGCATCTCATACGATACGAAATTCAGTTGAAAT
TGGCGCAGTGCTTTTCCTACATCAAGTCGATTTCGTATGTATGCCGCCGT
GCGTTCAGACTCGTTCCTTGGGCCTGGACTATAGTGCTGAGTGGCACAGG
CGCCGAAAGCAGGGTACAAGTAGGTTCGCTCTGAATTAACTGCGAGTTAT
TTGACTCCTTCCGATAACTCGATGAACCACAGACCAGCCCCTAAGAAATG
ACTCTGCTCTACTTGTACTCTACCCTCGGCACCTGTGGTATTTACTGCTA
TGATAAATCTATTATCATACCATTCTTTTTATTGTGCGTGTTGTCATCCC
ATCTTTTCTGGACGCCAGCCGTATCGGCGTTATCGCGCGCGGGGGGGGAG
ATGCGATGACTCTCTAGGGAACACCTGCGTCGGCCTTGGGATTGCCTGCT
ACCGCGAGTGGTCTAAGGATGTATCGCACCATAGCGCGCCGTGTGTGCGG
GTGCGCGTGTTCGCGCACAAATGTTAGGCGGGCTAAACGTTCGTTTGTCG
CCTTCGCCGGTTGGGGCAGTAAGTATTATTCTGGTATTATTTTCTCGGCA
TTTTTTTGTGGCATTTCACCGCCGGCCTGCGCGAGCACTCTTCGAAGTCT
GCATATGTACCGAGTATGAGACGCACGTAGATCCTGCCTGCCGTGCACAG
CGGTAGCAGTGCCGTAGTAGTCCAAGCTGCTCTGACATTGTCAGCATCGC
ACGCATCGGCGACGGCGACATATACTGGGGGGCGTGTACAACTATTACCG
CCGAGAAAATAATTACCGAGTTTTTTCGATTCCTGCCGCGATCTGTTTAG
ATTTGTTTCGATTTCCGCATGAATCTCTGCGCAAGATTTCTTTCGGTAAG
TATCCGGTACCAGACACGTATTATACTACGTACAGTAGGTCTCGGCGTAA
AAAGTGTAATCGCACGTATCGGCGATATCACACAGGTATCATAGGGGTGC
GCCAAAGAGACCGAAAGACGAAGTTGTTCGAAAACAATTTCACCGTGTGT
GTGCGTTCGCCGCATTCTTCCGGCACCAGATACTGCGAAGGTTAGGGCCT
ATGTTCACGGCCGAATATAAAAAAATGAAGTCTCGATGGCGATTAAGGTC
AAGCCTTGATGCTGCAGACTGGTGTGTTGACAGCACAAGTAGTACTAGTC
ACCCCTCCAAGGCTGCTGATCTTCTTATCGACAGCAGGATCAGAGCTTGA
TACATAAAAAGGCTTCGGCCCTTCGGCTGCAACGGCGTTTTTGCCTCTGG
TCTTTCGCGCTTCAGCGTCCCCGCGTGGTAGTGCTCACATGAGGTGATTC
TCCAGGACTCTTTAGTATGGGTTGTCTCACTCGCGTGGAAGTGCTCACAT
GAGGTGTTTCTCCAGGACTCTTTGGTTTGGGTTGTCTCACTGCACCTTGA
AATGCCTGCCTTCGATGTTGAGAGCAACTCTGCTCACGCTTGTTTCAGTG
CATGCCGGGTGCCGCCTTGGTGCGCCAGTGCTTGCTTGCACTTCATTCCG
CGGTGCCGGGTGCCACCCAGAAAGTCACCCACCCGAAGTCCGTTTCGCCG
TTTGTTGCAAGCAGGAACGTCGAGGAGAAACGTCTCAAGACGCAGGAACC
GGCGCGGCAGCAAGCGACACCGCTGCTTCGCCGCTGGGGGGGGCTGAAGC
TGGCGAGAGCAGTGACGACGACGCCTCTTGTAGCGCCGAAATGCCGCCTC
GGTGTGTTCCTGGCCGCGAAGATGACGGCGAGGGTGGGGGCCTGGCTCTC
AGCAATGCCAGTAGCCCGGAGGACCAAGAGGATGGCAGGAGCATAGGAAG
CTCCAGTACGGCGGAGGAGGCAGAGGAAGCAGGCGATGACTCTGATGGCC
CTGAGAAGTTCTCGACGACGCAGTTGGACGACGGTGGCGGTGCTGAAGAG
GCCGAACCAGCGCAGTTAGAATCGGCAGGGCCAGAGCCGGAACCGGTGAT
TTCTCCTGGAGACATCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:88950..93418+

>mRNA_P-littoralis_Contig131.10.2 ID=mRNA_P-littoralis_Contig131.10.2|Name=mRNA_P-littoralis_Contig131.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=882bp|location=Sequence derived from alignment at P-littoralis_Contig131:88950..93418+ (Pylaiella littoralis U1_48)
ATGTCATCGCGTTCCTCGGGGAGGCGGCAGGGCAGGCACAGCCCTCGTTG
TTCTCCATCACTAACAACTTGGACGTTTGCTGCTAACAGCAAAGGCGAAG
TGCTGTGGTACTGTCCTTCTGGTGGTAGTGAAGATGAGAGGTGCGGCAAC
CGGCCACACCTTCAAGACTATTGGAAAAAACACTATGGCAGCACGGCGAA
ATTCCCTGCTGACCAGTTCACTTTCAAGGCAGAGGGTGCCCCCTCTAGTT
TCAAGAGAGTCGATCCAGACAAGGGAACGGAGTACGAAGAGGACGAAGGT
CAAGAGAGCGACGGCAGTGGTGGTGTTGGTGGAGGTGATGGCGGCGGAAG
TAGTAGTGGTGGTAGTGGCGGAGGAGGAGGAGGAAGAGAAGGAGGAGAAA
GCACCAGTTCTAGCCATTTCACCGCAGGACAGGGCCAAAACAAGAGCACA
GGCAGCTCATCGCCGCCAAACAGCAAGGAACGTCGAGGAGAAACGTCTCA
AGACGCAGGAACCGGCGCGGCAGCAAGCGACACCGCTGCTTCGCCGCTGG
GGGGGGCTGAAGCTGGCGAGAGCAGTGACGACGACGCCTCTTGTAGCGCC
GAAATGCCGCCTCGGTGTGTTCCTGGCCGCGAAGATGACGGCGAGGGTGG
GGGCCTGGCTCTCAGCAATGCCAGTAGCCCGGAGGACCAAGAGGATGGCA
GGAGCATAGGAAGCTCCAGTACGGCGGAGGAGGCAGAGGAAGCAGGCGAT
GACTCTGATGGCCCTGAGAAGTTCTCGACGACGCAGTTGGACGACGGTGG
CGGTGCTGAAGAGGCCGAACCAGCGCAGTTAGAATCGGCAGGGCCAGAGC
CGGAACCGGTGATTTCTCCTGGAGACATCGGG
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