mRNA_P-littoralis_Contig131.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig131.6.1
Unique NamemRNA_P-littoralis_Contig131.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig131.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig131contigP-littoralis_Contig131:56004..58011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size633
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.4439034-UTR-P-littoralis_Contig131:56003..561621680789595.4439034-UTR-P-littoralis_Contig131:56003..56162Pylaiella littoralis U1_48UTRP-littoralis_Contig131 56004..56162 +
1680789595.4861026-UTR-P-littoralis_Contig131:57990..580111680789595.4861026-UTR-P-littoralis_Contig131:57990..58011Pylaiella littoralis U1_48UTRP-littoralis_Contig131 57991..58011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.4525301-CDS-P-littoralis_Contig131:56162..562341680789595.4525301-CDS-P-littoralis_Contig131:56162..56234Pylaiella littoralis U1_48CDSP-littoralis_Contig131 56163..56234 +
1680789595.4770007-CDS-P-littoralis_Contig131:57609..579901680789595.4770007-CDS-P-littoralis_Contig131:57609..57990Pylaiella littoralis U1_48CDSP-littoralis_Contig131 57610..57990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig131.6.1prot_P-littoralis_Contig131.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig131 56163..57990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig131.6.1

>prot_P-littoralis_Contig131.6.1 ID=prot_P-littoralis_Contig131.6.1|Name=mRNA_P-littoralis_Contig131.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MEVCASHKIFGRRDTQPSCKTQMKDKRQPRTFGEHPENIRRGKEGNASAL
GHNSSTRVHGASPIPKGDGGSGRSHRSISLVLRKENRHFCCRYRRHYRRR
AKWRGHRRRFAERRVRQQGEPTEATAERSARSALRRGVVFGTTTPAETVV
*
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mRNA from alignment at P-littoralis_Contig131:56004..58011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig131.6.1 ID=mRNA_P-littoralis_Contig131.6.1|Name=mRNA_P-littoralis_Contig131.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2008bp|location=Sequence derived from alignment at P-littoralis_Contig131:56004..58011+ (Pylaiella littoralis U1_48)
GGGCGTCATGTATCGAACGGCCGGCTACGGCAGCAGCAGTTTACAGCACG
AGAGAGAGGAAGTGTGCGCAGCAGATGGAATCCGCAGCAACAAGCACTCG
GGTCTCCCACACTGTCTTGTACATTACCCTCCTGTTTCAAGGTAGTGTCT
CTGCAACTCATGGAAGTCTGTGCCTCACACAAAATATTCGGTCGGAGGGA
CACACAGCCCAGCTGCAAGACACAGATGAAGGTGAAACGAGGTAGACAGC
GATGGAAAAACACAGAATCTACTACCTCGAAGCGCCAGACGCCCGTACAT
CCTCCGCCACAGGCAGAACGAATAATCCTAGTCAGGCGAAACGAATAATC
CTAATCCTCTTCCCTCACGAGGTTTTTCTGTTTCATGTGGAGATAGACGC
GCCCTTAGACATGCCAGCAGGCTTCCACCCTTCCTACAATGTACGAAGTA
GCTTCCACCCCACAGTACGGGCGCCCTACCCGAAATCCTGACCCCCTAAC
CTTCGAATGGGGCGGGTGCTTGATTGCTGTGCGTCGGGAAGGTTCTGGGT
GGTCATGGCAGCGAAACCGGTGGAGTTTTTTTACGAGTTTTCTCCTGCCC
ACGTTTGGTAGATCGACGGGCGCAATCCGAAGTTGTAGGTTGGCATTGCT
TTTGTTGGAACATTCCGAGGAGGGGTTGCGCCATGGGGTACCAATTTGAT
TTACTTTGAAAACAAGTACCGCCGAATTGAATTTGTCCAGGCGAACGTCT
TTTTCTTCACCGGCCTTGTTTGTAGCGCGAGTAGTTTTCTTCATTCCAAT
GCACAACCACCTTGAAAGTTGACCCTGCCTTTTTCTGGCCCATGCCATTG
ACGCCTTTCACGAACATCATTCTAAGACATCTGAGTCCGACTGAATTCGC
GTCGAATTCGTTTTGTAATTAGAGCTGCATCGTATCCACGCCCACGACGT
GAGGCTCCGTTGGTTGAAGGTGGGCTGATGTTGCGTCAGTTTTACCGCGT
TGTTAACGCTCCAAACTGGCGGGAGGGTCGCCGATATCCGTCTGTTCTGG
CTACTTCCTGCTGCTGCTGCCGTCTGGGGATTGAACGCACCTCACACAAA
CATCAGAAGGCAATATTTCTTTCTTGGGCTGTGGTTGCGTGCGGGGGGCT
AGCCGGCTCGTGCAGCTACTGAACAGCAAGACGTGTCGGTGCTACCCTTG
GCTGAACTTCAAAAGCTCAGAAGTTGGACTCTACAGCAGTCTACACTTCC
GCCTCCTGACCCTCCCTTGAGAAGTCGCGGGGTGCCTGAAAACTGGGGAA
TTTTGCAAGCTGCAGCTGATAAAATATGCTGATGGGCCTCTACTCAAAAG
ACTGATGGATTACGAATCAGAGGGTGATCTTCATCTTTCATAGCTCTTGC
TTAAAAAAATATTCACTAAGTACGGGTGACCGGAGAAGTCACGAAGCCTC
GTCGTCGAAGGTAGCCTACTGCTGTTTCGTGTAGATTTGCGGGCCCGCGA
AGTGGGGGTCCCAACATGAACGGCATCATTTTCTATGCAACTTATATTGA
CCTTTGGTTATCGCGCTGTTGTTGCGCTACCGCCATGATATACTCGAACG
TAACAGGACAAGAGACAGCCGCGAACATTCGGAGAACATCCGGAGAATAT
TCGGAGAGGAAAAGAGGGGAACGCATCGGCATTAGGCCATAACAGTAGTA
CCCGTGTTCATGGGGCCTCGCCGATCCCGAAAGGCGATGGTGGTTCGGGC
CGCAGCCACCGGTCTATTAGCCTTGTGCTGCGCAAGGAAAACAGGCACTT
CTGCTGTCGGTACCGTCGGCACTATCGCCGCCGCGCGAAGTGGAGAGGAC
ACCGCCGTCGCTTTGCGGAGAGAAGGGTCCGACAACAGGGAGAGCCCACA
GAAGCGACAGCGGAGCGTTCCGCGAGAAGCGCTCTTCGCCGAGGAGTCGT
TTTTGGAACGACAACACCTGCTGAAACCGTTGTCTGAGGGTCTGTGGGTG
CGAGAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig131:56004..58011+

>mRNA_P-littoralis_Contig131.6.1 ID=mRNA_P-littoralis_Contig131.6.1|Name=mRNA_P-littoralis_Contig131.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig131:56004..58011+ (Pylaiella littoralis U1_48)
ATGGAAGTCTGTGCCTCACACAAAATATTCGGTCGGAGGGACACACAGCC
CAGCTGCAAGACACAGATGAAGGACAAGAGACAGCCGCGAACATTCGGAG
AACATCCGGAGAATATTCGGAGAGGAAAAGAGGGGAACGCATCGGCATTA
GGCCATAACAGTAGTACCCGTGTTCATGGGGCCTCGCCGATCCCGAAAGG
CGATGGTGGTTCGGGCCGCAGCCACCGGTCTATTAGCCTTGTGCTGCGCA
AGGAAAACAGGCACTTCTGCTGTCGGTACCGTCGGCACTATCGCCGCCGC
GCGAAGTGGAGAGGACACCGCCGTCGCTTTGCGGAGAGAAGGGTCCGACA
ACAGGGAGAGCCCACAGAAGCGACAGCGGAGCGTTCCGCGAGAAGCGCTC
TTCGCCGAGGAGTCGTTTTTGGAACGACAACACCTGCTGAAACCGTTGTC
TGA
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