mRNA_P-littoralis_Contig1309.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1309.10.2
Unique NamemRNA_P-littoralis_Contig1309.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 1.090e-102
Identity = 173/242 (71.49%), Postives = 175/242 (72.31%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRXRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKVGVGQEWSSYMCRRYLHSDSRGMLADLYNPRQDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 730
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERR RRTSGPRAVGTDAQQAT D TKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK                        ADLY PRQDEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVK------------------------ADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.400e-55
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRXRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERR RRTSGPRAVGTDAQQAT D TKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 8.590e-30
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  722 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 1000
            DILE RFAHIR GMG HKAPTA+QAA+   HGDTCR+SHG +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  800 DILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.940e-22
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:  722 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 1000
            DILE RFAHIR+G G HK PTA QA +A   GDT R+ HG RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.850e-15
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  515 RQDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 733
            R+DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   62 RRDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1309.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE1.090e-10271.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE5.400e-5594.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE8.590e-3069.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE2.940e-2259.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE7.850e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1309contigP-littoralis_Contig1309:17355..18893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1013
Hectar predicted targeting categoryother localisation
Exons4
Cds size1002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1309.10.2prot_P-littoralis_Contig1309.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1309 17362..18889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.243859-UTR-P-littoralis_Contig1309:17354..173611680789595.243859-UTR-P-littoralis_Contig1309:17354..17361Pylaiella littoralis U1_48UTRP-littoralis_Contig1309 17355..17361 -
1680789595.3020706-UTR-P-littoralis_Contig1309:18889..188931680789595.3020706-UTR-P-littoralis_Contig1309:18889..18893Pylaiella littoralis U1_48UTRP-littoralis_Contig1309 18890..18893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.2634869-CDS-P-littoralis_Contig1309:17361..176461680789595.2634869-CDS-P-littoralis_Contig1309:17361..17646Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 17362..17646 -
1680789595.272715-CDS-P-littoralis_Contig1309:17914..181801680789595.272715-CDS-P-littoralis_Contig1309:17914..18180Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 17915..18180 -
1680789595.2817633-CDS-P-littoralis_Contig1309:18243..185171680789595.2817633-CDS-P-littoralis_Contig1309:18243..18517Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 18244..18517 -
1680789595.2906535-CDS-P-littoralis_Contig1309:18712..188891680789595.2906535-CDS-P-littoralis_Contig1309:18712..18889Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 18713..18889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1309.10.2

>prot_P-littoralis_Contig1309.10.2 ID=prot_P-littoralis_Contig1309.10.2|Name=mRNA_P-littoralis_Contig1309.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=334bp
MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRRRRTSGPRAVGTDA
QQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKVGVGQEWSSY
MCRRYLHSDSRGMLADLYNPRQDEDLACYYGLKKSFSGRSTTWVLSRSSL
ARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDILEMRFAHIR
AGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGAT
LRVALPVNAEERGEVVRAATWRNADHVFETRSV*
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mRNA from alignment at P-littoralis_Contig1309:17355..18893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1309.10.2 ID=mRNA_P-littoralis_Contig1309.10.2|Name=mRNA_P-littoralis_Contig1309.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-littoralis_Contig1309:17355..18893- (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACCAACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAGGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGGCACTCTGTTTGGT
TTCATATGCGCCGTTTGAAGTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCAAGATAACGGGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTCGTCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACCCGTCTCTTGCAACCTT
GCTGCCCCTCCCATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTAT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGATGT
GCGCGGTTGAATTTTGTCTGTGTTGTAGAGATTGCAGATGAGTGGGCTAG
CTGGCGTGATAGGGCGCGCCCGTGCTGGTCAATAATCTGCAAGTGAACTC
GGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTTTTGTTGGCTGGCGC
GACGCTATCGTCGTGTGGTGCTGGTGTCAATTAACTCCTTTATGTCCGTA
CGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCATCTCACCCAGGAC
ATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAATGGGGTGTCACAA
GGCTCCTACGGCGTCTCAGGCGGCTCAAGCTGGAATGCACGGAGATACTT
GTCGGCTGTCCCACGGTGAACGGCGTCGCAATTCGTCGAGATCGGGCGGG
CAGCCGTTCGACATCCAACAGGGAGCAACTTTGCGAGTGGCATTACCTGT
TAACGCGGAAGAGCGAGGAGAAGTAGTGAGAGCCGCCACGTGGCGCAATG
CAGACCATGTGTTTGAGACGCGCTCGGTGTGAAGTACTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1309:17355..18893-

>mRNA_P-littoralis_Contig1309.10.2 ID=mRNA_P-littoralis_Contig1309.10.2|Name=mRNA_P-littoralis_Contig1309.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1002bp|location=Sequence derived from alignment at P-littoralis_Contig1309:17355..18893- (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACCAACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAGGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTCGTCGTAT
ATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTATGTTGGCCGATTT
ATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACTACGGACTCAAGA
AAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTCATTG
GCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAGGATG
GGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGCAAGG
GTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACATAAGG
GCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTCAAGC
TGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCGCA
ATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAACT
TTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTGAG
AGCCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCGGTGT
GA
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