mRNA_P-littoralis_Contig1309.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1309.8.1
Unique NamemRNA_P-littoralis_Contig1309.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.340e-24
Identity = 72/164 (43.90%), Postives = 89/164 (54.27%), Query Frame = 1 
Query:    4 KEVFWVDGLQPSGAEERTRAVFCVHVCAIAATAVRAGIGLGRGIYSIKELELALAVGRAPHEST-KESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFAN 492
            K  F VD L+P  AE R RA          A AVR GIG GR +Y++KELEL+LA   APH +T +E KV GY   +HDT Y N+    EG+         +   M +GPD  HE NH   CR  YSG++TC  I GV  T  E  +  K +Y RS+N M F N
Sbjct:  933 KVDFVVDCLKPLTAEVRERA----------AIAVRGGIGFGRDVYALKELELSLARNAAPHATTTEEGKVVGYDAIFHDTRYKNF----EGDP--------IKREMRIGPDGHHENNHGPDCRKLYSGLTTCKDIGGVNLTRHESDHGVKVMYLRSINNMTFPN 1074
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BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Match: A0A6H5KPQ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-15
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  492 FAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFRRVDFVFLTAML 713
            F + LRVINE QN+ +N+KTL T L ++  HP+ + + C  ALW  GR FC KPVMRVFD   RVD V L  +L
Sbjct:  149 FTFALRVINERQNQGFNRKTLRTLLASVTEHPKDSFAGCEAALWRCGRRFCGKPVMRVFDCLGRVDIVMLATVL 222
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BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.520e-15
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  492 FAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFRRVDFVFLTAML 713
            F + LRVINE Q++ +N+KTL T L +I  HP+ + + C   LW  GRCFC KPVMRVFD   RVD V L  +L
Sbjct:  415 FTFALRVINERQDQGFNRKTLRTLLASITEHPKDSFAGCEATLWRCGRCFCRKPVMRVFDCLGRVDIVMLATVL 488
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BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Match: A0A6H5KGV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.690e-14
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  492 FAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFRRVDFVFLTAML 713
            F + LRVINE QN+ +N+KTL T L ++   P+ +   C  ALW  GRCFC K VMRVFD   RVD V L  +L
Sbjct:  236 FTFALRVINERQNQGFNRKTLRTLLASVTELPKDSFDGCEAALWRCGRCFCGKSVMRVFDCLGRVDIVMLATVL 309
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BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.970e-14
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  492 FAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFRRVDFVFLTAML 713
            F + LRV+NE QN+  N+KTL T L ++  H +   + C  ALW  GRCFC KPVMRVFD   RVD V L  ML
Sbjct:  403 FTFALRVLNERQNQGCNRKTLRTHLPSVTEHAKDIFASCEVALWRYGRCFCRKPVMRVFDCLGRVDIVMLATML 476
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1309.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE1.340e-2443.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPQ6_9PHAE1.000e-1552.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCW5_9PHAE4.520e-1552.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV9_9PHAE4.690e-1451.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXC8_9PHAE8.970e-1452.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1309contigP-littoralis_Contig1309:7334..8585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size870
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.1960876-CDS-P-littoralis_Contig1309:7333..73961680789595.1960876-CDS-P-littoralis_Contig1309:7333..7396Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 7334..7396 +
1680789595.2087045-CDS-P-littoralis_Contig1309:7778..82281680789595.2087045-CDS-P-littoralis_Contig1309:7778..8228Pylaiella littoralis U1_48CDSP-littoralis_Contig1309 7779..8228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.2170432-UTR-P-littoralis_Contig1309:8228..85851680789595.2170432-UTR-P-littoralis_Contig1309:8228..8585Pylaiella littoralis U1_48UTRP-littoralis_Contig1309 8229..8585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1309.8.1prot_P-littoralis_Contig1309.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1309 7334..8228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1309.8.1

>prot_P-littoralis_Contig1309.8.1 ID=prot_P-littoralis_Contig1309.8.1|Name=mRNA_P-littoralis_Contig1309.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
DKEVFWVDGLQPSGAEERTRAVFCVHVCAIAATAVRAGIGLGRGIYSIKE
LELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYT
GLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKK
PVYFRSVNTMGFANSPTRFV*
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mRNA from alignment at P-littoralis_Contig1309:7334..8585+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1309.8.1 ID=mRNA_P-littoralis_Contig1309.8.1|Name=mRNA_P-littoralis_Contig1309.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-littoralis_Contig1309:7334..8585+ (Pylaiella littoralis U1_48)
GACAAGGAAGTCTTCTGGGTCGACGGCCTGCAGCCCAGTGGCGCTGAAGA
GAGAACACGAGCAGGTGCGCACATGTTGCGGTCCGTCTTCATATGCAGAC
GGGTGTCCTGTGACTGGGGACGTGGAAATTCGTTGCGTTGTTTTTGTCCT
AGACAGACTGGCTATTTGGTTGATATGTTATGGCGGCGCCCACGGCACCA
AACGCACCATTTGTGAACTCCAACGGGGGTTACGTGTAGAGCAACATTTG
CAGATCGATTTTGGAACTCCGCGTTAAACAAATGTTTGTGTCGTGCTGCA
GAGGTCGCACATCCAGTCCCGAGAAACAAACTACACGAGCAATGTCACTA
TCTCGGCGCAGGACGGGTCAGACCGGACACGGTCAATATTTTCTACCTTC
GCTGCCTGCGCTCACGTCCTTGTATATATGTCTTTTACCTGTGACGTTTT
TTGCGTTCACGTTTGCGCGATTGCAGCAACAGCGGTCCGCGCCGGGATTG
GACTCGGTCGCGGCATCTACTCGATCAAGGAGCTAGAACTCGCGCTGGCG
GTCGGGCGAGCGCCGCACGAGAGTACTAAGGAATCCAAGGTTCCTGGGTA
CGGTGTGACCTGGCACGATACGACGTACGACAACTGGTCGCTGCAAGTTG
AAGGGGAAGGGCCAAATCCCCACCCGTACACAGGTCTATCGGGCGGAATG
CATGTAGGACCGGATGCCATCCATGAGACCAACCACAACGAGCAGTGTAG
GCTTGACTATAGCGGCATATCGACATGTGCACACATTAGCGGTGTTTGTG
CCACCGTGGCAGAGCAGCACAACTCAAAGAAACCGGTGTATTTCCGGTCG
GTCAACACCATGGGCTTTGCTAATTCGCCTACACGCTTCGTGTAATCAAC
GAAGTCCAGAACGAACAGTACAACAAGAAAACCCTTGGCACGTTCCTGGG
GGCTATTGACGGCCACCCACGACACAACCTCTCCATCTGCGTGGAAGCCC
TTTGGGACAGTGGGAGATGCTTTTGCGCGAAGCCTGTCATGCGCGTGTTT
GACCGCTTCCGAAGGGTGGACTTTGTCTTTCTTACCGCTATGCTCCTGGC
CTGAGTGAAAGCTGTCTCCGATAGAAGATTTGTTGACATTTTGATGGGTG
ACAGGGTTGGTAGAGTGGGACAGCACTGCACTACGTTGAGTCGTTGACAC
TGGTGTGTGTGCACACAGTTTGGTGCTGAGGCACGTTTGGGGGGGAACGA
CA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1309:7334..8585+

>mRNA_P-littoralis_Contig1309.8.1 ID=mRNA_P-littoralis_Contig1309.8.1|Name=mRNA_P-littoralis_Contig1309.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig1309:7334..8585+ (Pylaiella littoralis U1_48)
GACAAGGAAGTCTTCTGGGTCGACGGCCTGCAGCCCAGTGGCGCTGAAGA
GAGAACACGAGCAGTTTTTTGCGTTCACGTTTGCGCGATTGCAGCAACAG
CGGTCCGCGCCGGGATTGGACTCGGTCGCGGCATCTACTCGATCAAGGAG
CTAGAACTCGCGCTGGCGGTCGGGCGAGCGCCGCACGAGAGTACTAAGGA
ATCCAAGGTTCCTGGGTACGGTGTGACCTGGCACGATACGACGTACGACA
ACTGGTCGCTGCAAGTTGAAGGGGAAGGGCCAAATCCCCACCCGTACACA
GGTCTATCGGGCGGAATGCATGTAGGACCGGATGCCATCCATGAGACCAA
CCACAACGAGCAGTGTAGGCTTGACTATAGCGGCATATCGACATGTGCAC
ACATTAGCGGTGTTTGTGCCACCGTGGCAGAGCAGCACAACTCAAAGAAA
CCGGTGTATTTCCGGTCGGTCAACACCATGGGCTTTGCTAATTCGCCTAC
ACGCTTCGTGTAA
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