mRNA_P-littoralis_Contig1308.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1308.6.1
Unique NamemRNA_P-littoralis_Contig1308.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1308.6.1 vs. uniprot
Match: A0A6H5K8T4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.410e-7
Identity = 26/51 (50.98%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 MALVAAIEEKNIAVWEAKDGGGIQLYQNGHETGLFIRNSENIDEFVHLLYS 153
            +ALVAA++  NIAVWEAK GGG+++ + G  TG+F+ +  N DE++HL+Y+
Sbjct:  234 LALVAAVKRCNIAVWEAKTGGGLRIVEIGDITGIFVGDL-NRDEYLHLVYN 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1308.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8T4_9PHAE1.410e-750.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1308contigP-littoralis_Contig1308:10386..10610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size226
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789595.0410213-CDS-P-littoralis_Contig1308:10385..106101680789595.0410213-CDS-P-littoralis_Contig1308:10385..10610Pylaiella littoralis U1_48CDSP-littoralis_Contig1308 10386..10610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1308.6.1prot_P-littoralis_Contig1308.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1308 10386..10610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1308.6.1

>prot_P-littoralis_Contig1308.6.1 ID=prot_P-littoralis_Contig1308.6.1|Name=mRNA_P-littoralis_Contig1308.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MALVAAIEEKNIAVWEAKDGGGIQLYQNGHETGLFIRNSENIDEFVHLLY
SNGNCTISKLQDGTYPVRNSRVTSQ
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mRNA from alignment at P-littoralis_Contig1308:10386..10610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1308.6.1 ID=mRNA_P-littoralis_Contig1308.6.1|Name=mRNA_P-littoralis_Contig1308.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig1308:10386..10610+ (Pylaiella littoralis U1_48)
ATGGCGCTGGTTGCAGCAATCGAAGAGAAAAACATCGCGGTGTGGGAAGC
GAAGGACGGCGGGGGGATCCAGTTGTACCAGAACGGTCACGAGACAGGTT
TGTTCATCAGAAATTCTGAAAACATCGACGAATTTGTGCATTTGTTGTAT
AGCAACGGAAACTGCACCATTTCGAAGCTGCAGGACGGAACGTACCCTGT
GCGCAATTCTCGCGTCACGAGTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1308:10386..10610+

>mRNA_P-littoralis_Contig1308.6.1 ID=mRNA_P-littoralis_Contig1308.6.1|Name=mRNA_P-littoralis_Contig1308.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig1308:10386..10610+ (Pylaiella littoralis U1_48)
ATGGCGCTGGTTGCAGCAATCGAAGAGAAAAACATCGCGGTGTGGGAAGC
GAAGGACGGCGGGGGGATCCAGTTGTACCAGAACGGTCACGAGACAGGTT
TGTTCATCAGAAATTCTGAAAACATCGACGAATTTGTGCATTTGTTGTAT
AGCAACGGAAACTGCACCATTTCGAAGCTGCAGGACGGAACGTACCCTGT
GCGCAATTCTCGCGTCACGAGTCAG
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