mRNA_P-littoralis_Contig1307.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.290e-50 Identity = 105/218 (48.17%), Postives = 134/218 (61.47%), Query Frame = 2
Query: 50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG---GAQGTLMCRACFMNAASHTAAAVARVQGGK-GTRRRKDMGW 691
QP MRK+Y MGGV+TADQQN +HTHDHK+ NHWRRVI+ K E+ TN + F+K+ S L+ +A R++ G E EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG + GGR A + +VWGS+ VK R CM+P C ++ GC+CAE G G +G LMC+ACF N H A A+ K G RKD+ W
Sbjct: 201 QQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYVSLLEDQANKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAV------TGAPDKVWGSISVKTQRKCMHPGCKSKTSKGCACAELCVGKQAGDRGVLMCQACFNNPVKHARAGDAQRNPQKYGVVGRKDLVW 412
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.640e-46 Identity = 104/218 (47.71%), Postives = 137/218 (62.84%), Query Frame = 2
Query: 50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG---GAQGTLMCRACFMNAASHTAAAVARVQGGK-GTRRRKDMGW 691
QP MRK+Y MGGV+TAD+QNG+HTHDH++ NHWR V++ K +Q+ TN F+ F+K+ S L+ +A R+E G E EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG + GGR A + + +VWGS+ VK R CM+P C ++ GC+CAE G G +G LMC+ACF N H A A+ K G RKD+ W
Sbjct: 976 QQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANKRIEGGGVELEVVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGGRPA------EVTGAPDKVWGSISVKTQRKCMHPGCKSKTWKGCACAELCVGKQAGDRGVLMCQACFNNPVRHGRAGDAQRNPQKYGVVGRKDLVW 1187
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JMI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI2_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.100e-23 Identity = 60/134 (44.78%), Postives = 82/134 (61.19%), Query Frame = 2
Query: 170 IDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG 571
++ K EQ+ TN F+ F+K+ S L+ +A R++ G E EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG + GGR A + +VWGS+ VK R CM+P C ++ GC+CAE G
Sbjct: 1 MEGKFEQTFTNIFVMFKKYVSLLEDQANKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAV------TGAPDKVWGSISVKTQRKCMHPGCKSKTSKGCACAELCVG 128
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE) HSP 1 Score: 101 bits (252), Expect = 4.100e-21 Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 2
Query: 50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADW 355
QP MRK+Y +GGVDTADQQNG+H HDH+AC N+WRRV++ KIE++ TN F+ F+ + + L+ EA+ R+E + E + KL + EL RLA LER+ W
Sbjct: 119 QQPWMRKDYVANIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIFVMFKAFVTFLEDEAKDRLEGVDLELDVSMKLEGVVDELARLANLERSAW 220
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 3.960e-15 Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 2
Query: 50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQAR 388
QP MRK+Y MGGVDTADQQNG+HTHDHK+ NHWRRV++ K EQ+ TN F+ F+K G K+ERA WD +L+ EL AR
Sbjct: 1030 QQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFKKLG-----------------------------------KMERAVWDEMLSTELMAR 1107
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JWA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA2_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 8.780e-6 Identity = 65/265 (24.53%), Postives = 96/265 (36.23%), Query Frame = 2
Query: 122 AHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVES------------------------------------------------------------GEGETA----ANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDC---------SKRSQNGCSCAECTA--GGAQGTLMCRACFMNAASHTAAAVARVQGGKGTRRRKDMGW 691
AH H HK WRRV D+ + Q+ +N +L + W ++ +E+ GEGE+ + E+L V L + +ER WD L+ L A+CNVG++++GGRRAG P +G K AR C C SKR+ C C C+ G A+ +C C ++H AAA A + R+ K + W
Sbjct: 2 AHQHHHKPKTFFWRRVFDQNLAQAISNAYLLYAAWAGIFATQCTAALEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDWEGGDEEEXXXXXXXXXXXXXXXXXGEGESTDAPLSKEELEEFGVLLKKCLAMERVTWDQRLSTHLMAKCNVGTLNSGGRRAGPVV--PPYDSKG-------AKCARVCKGGSCGNKTGGRYRSKRTTGVCWCNVCSGSKGKARALHLCHTCKKIPSAHGAAAEAADK----KRKYKPIDW 253 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1307.1.1 >prot_P-littoralis_Contig1307.1.1 ID=prot_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTback to top mRNA from alignment at P-littoralis_Contig1307:25..1318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1307.1.1 ID=mRNA_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-littoralis_Contig1307:25..1318+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1307:25..1318+ >mRNA_P-littoralis_Contig1307.1.1 ID=mRNA_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig1307:25..1318+ (Pylaiella littoralis U1_48)back to top |