mRNA_P-littoralis_Contig1307.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1307.1.1
Unique NamemRNA_P-littoralis_Contig1307.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 9.290e-50
Identity = 105/218 (48.17%), Postives = 134/218 (61.47%), Query Frame = 2
Query:   50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG---GAQGTLMCRACFMNAASHTAAAVARVQGGK-GTRRRKDMGW 691
             QP MRK+Y   MGGV+TADQQN +HTHDHK+  NHWRRVI+ K E+  TN  + F+K+ S L+ +A  R++ G  E    EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG  + GGR A        +    +VWGS+ VK  R CM+P C  ++  GC+CAE   G   G +G LMC+ACF N   H  A  A+    K G   RKD+ W
Sbjct:  201 QQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYVSLLEDQANKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAV------TGAPDKVWGSISVKTQRKCMHPGCKSKTSKGCACAELCVGKQAGDRGVLMCQACFNNPVKHARAGDAQRNPQKYGVVGRKDLVW 412          
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.640e-46
Identity = 104/218 (47.71%), Postives = 137/218 (62.84%), Query Frame = 2
Query:   50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG---GAQGTLMCRACFMNAASHTAAAVARVQGGK-GTRRRKDMGW 691
             QP MRK+Y   MGGV+TAD+QNG+HTHDH++  NHWR V++ K +Q+ TN F+ F+K+ S L+ +A  R+E G  E    EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG  + GGR A      + +    +VWGS+ VK  R CM+P C  ++  GC+CAE   G   G +G LMC+ACF N   H  A  A+    K G   RKD+ W
Sbjct:  976 QQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANKRIEGGGVELEVVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGGRPA------EVTGAPDKVWGSISVKTQRKCMHPGCKSKTWKGCACAELCVGKQAGDRGVLMCQACFNNPVRHGRAGDAQRNPQKYGVVGRKDLVW 1187          
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JMI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.100e-23
Identity = 60/134 (44.78%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  170 IDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDCSKRSQNGCSCAECTAG 571
            ++ K EQ+ TN F+ F+K+ S L+ +A  R++ G  E    EKL R +VEL RLAK+ERA WD +L+ EL ARCNVG  + GGR A        +    +VWGS+ VK  R CM+P C  ++  GC+CAE   G
Sbjct:    1 MEGKFEQTFTNIFVMFKKYVSLLEDQANKRIKGGGLELEVVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAV------TGAPDKVWGSISVKTQRKCMHPGCKSKTSKGCACAELCVG 128          
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5KIY7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.100e-21
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 2
Query:   50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADW 355
             QP MRK+Y   +GGVDTADQQNG+H HDH+AC N+WRRV++ KIE++ TN F+ F+ + + L+ EA+ R+E  + E   + KL   + EL RLA LER+ W
Sbjct:  119 QQPWMRKDYVANIGGVDTADQQNGSHAHDHEACTNYWRRVMEAKIEETFTNIFVMFKAFVTFLEDEAKDRLEGVDLELDVSMKLEGVVDELARLANLERSAW 220          
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.960e-15
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 2
Query:   50 MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERADWDTVLARELQAR 388
             QP MRK+Y   MGGVDTADQQNG+HTHDHK+  NHWRRV++ K EQ+ TN F+ F+K G                                   K+ERA WD +L+ EL AR
Sbjct: 1030 QQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFKKLG-----------------------------------KMERAVWDEMLSTELMAR 1107          
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Match: A0A6H5JWA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 8.780e-6
Identity = 65/265 (24.53%), Postives = 96/265 (36.23%), Query Frame = 2
Query:  122 AHTHDHKACNNHWRRVIDKKIEQSKTNGFLCFRKWGSELKSEAEGRVES------------------------------------------------------------GEGETA----ANEKLGREIVELDRLAKLERADWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAARYCMNPDC---------SKRSQNGCSCAECTA--GGAQGTLMCRACFMNAASHTAAAVARVQGGKGTRRRKDMGW 691
            AH H HK     WRRV D+ + Q+ +N +L +  W     ++    +E+                                                            GEGE+     + E+L    V L +   +ER  WD  L+  L A+CNVG++++GGRRAG      P   +G        K AR C    C         SKR+   C C  C+   G A+   +C  C    ++H AAA A  +     R+ K + W
Sbjct:    2 AHQHHHKPKTFFWRRVFDQNLAQAISNAYLLYAAWAGIFATQCTAALEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDWEGGDEEEXXXXXXXXXXXXXXXXXGEGESTDAPLSKEELEEFGVLLKKCLAMERVTWDQRLSTHLMAKCNVGTLNSGGRRAGPVV--PPYDSKG-------AKCARVCKGGSCGNKTGGRYRSKRTTGVCWCNVCSGSKGKARALHLCHTCKKIPSAHGAAAEAADK----KRKYKPIDW 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1307.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KCK7_9PHAE9.290e-5048.17DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE1.640e-4647.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI2_9PHAE1.100e-2344.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY7_9PHAE4.100e-2150.98DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE3.960e-1544.25HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JWA2_9PHAE8.780e-624.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1307contigP-littoralis_Contig1307:25..1318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1294
Hectar predicted targeting categoryother localisation
Exons1
Cds size660
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.79957-UTR-P-littoralis_Contig1307:24..731680789594.79957-UTR-P-littoralis_Contig1307:24..73Pylaiella littoralis U1_48UTRP-littoralis_Contig1307 25..73 +
1680789594.818329-UTR-P-littoralis_Contig1307:733..13181680789594.818329-UTR-P-littoralis_Contig1307:733..1318Pylaiella littoralis U1_48UTRP-littoralis_Contig1307 734..1318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.8087626-CDS-P-littoralis_Contig1307:73..7331680789594.8087626-CDS-P-littoralis_Contig1307:73..733Pylaiella littoralis U1_48CDSP-littoralis_Contig1307 74..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1307.1.1prot_P-littoralis_Contig1307.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1307 74..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1307.1.1

>prot_P-littoralis_Contig1307.1.1 ID=prot_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
MQPEMRKEYCQFMGGVDTADQQNGAHTHDHKACNNHWRRVIDKKIEQSKT
NGFLCFRKWGSELKSEAEGRVESGEGETAANEKLGREIVELDRLAKLERA
DWDTVLARELQARCNVGSIHAGGRRAGAKAKAKPSTEEGRVWGSVRVKAA
RYCMNPDCSKRSQNGCSCAECTAGGAQGTLMCRACFMNAASHTAAAVARV
QGGKGTRRRKDMGWIKHSE*
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mRNA from alignment at P-littoralis_Contig1307:25..1318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1307.1.1 ID=mRNA_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-littoralis_Contig1307:25..1318+ (Pylaiella littoralis U1_48)
GAAGAGTAAAGCTGACCGGGAGGATGAGGATGATACGACGGAGAAGTCGA TGCAACCAGAGATGAGAAAGGAATATTGCCAGTTTATGGGGGGCGTAGAC ACGGCCGACCAGCAGAACGGCGCGCACACGCATGATCACAAGGCCTGCAA CAACCACTGGAGGCGCGTGATAGATAAAAAAATAGAGCAATCCAAGACGA ATGGTTTTTTGTGTTTCAGGAAGTGGGGGAGCGAGCTGAAGTCTGAAGCG GAGGGAAGGGTCGAGAGCGGCGAAGGGGAGACGGCAGCAAATGAAAAGTT GGGTCGTGAGATTGTTGAGCTAGACAGGCTGGCCAAACTAGAGCGGGCTG ATTGGGATACGGTTTTGGCGCGGGAATTGCAGGCAAGATGCAACGTCGGT AGCATTCACGCAGGCGGGAGGCGGGCTGGGGCTAAGGCTAAGGCTAAGCC TAGTACCGAAGAGGGTCGTGTTTGGGGTAGTGTACGCGTAAAGGCGGCGC GTTACTGTATGAATCCCGACTGCAGCAAGAGGTCTCAGAATGGGTGCAGT TGCGCAGAGTGTACGGCAGGGGGTGCCCAGGGGACATTGATGTGCCGGGC ATGCTTCATGAACGCTGCTTCACACACGGCAGCGGCAGTAGCTCGGGTGC AAGGCGGAAAGGGGACGCGCAGAAGAAAGGATATGGGGTGGATAAAGCAC TCGGAGTAAATGCTTATTTTCTGTTGAACTTTGCTGTTGTCAGCGTTCAA TTTCATATGAAGGGGTTGACAAAGAGAACATTTTATGAAGTATTATGGAA ATGTGTTCGGCCGCAACGCAAGAGTAGACTGCCAGAAATACAGGCGTTTT TTTCTGTGCATCGTGCAGCAAAGCAATACGTGCTCCGCTCGCCATTGACC ACAGAAGTGTGATTGGATGTGCGTACGTATGACTGCGAACATTTTTTCTA AAAACGATCCGTAGTCTGGATATATATGGGGCAAATATTTAATATTTGGC AGCAGATTTGTCGTTGGGTCTTTTGCAGGCGTTGGTCATGCCCTTGTTAT ATTATGTTTGGGGGAATGCTTGCTTCTTTGGTGTGTGTCGCATGCATGGC GCAGTTAGTAGTAATCAGTGCTGTATCGCCATTTTGAGCTAACTTTGTAG TGTTTTCATGGTGTGTGCGAATGACCACCACCCCCCTCCCCGTGTTGGCG CCTGTGTGGATAAAACTGTTGCCATTTCGAGGCATCGTCGAAGCTCATTG CGGAAGCTGGCAGCAAGCCAACCCTAACCAATGTGATGTTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1307:25..1318+

>mRNA_P-littoralis_Contig1307.1.1 ID=mRNA_P-littoralis_Contig1307.1.1|Name=mRNA_P-littoralis_Contig1307.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig1307:25..1318+ (Pylaiella littoralis U1_48)
ATGCAACCAGAGATGAGAAAGGAATATTGCCAGTTTATGGGGGGCGTAGA
CACGGCCGACCAGCAGAACGGCGCGCACACGCATGATCACAAGGCCTGCA
ACAACCACTGGAGGCGCGTGATAGATAAAAAAATAGAGCAATCCAAGACG
AATGGTTTTTTGTGTTTCAGGAAGTGGGGGAGCGAGCTGAAGTCTGAAGC
GGAGGGAAGGGTCGAGAGCGGCGAAGGGGAGACGGCAGCAAATGAAAAGT
TGGGTCGTGAGATTGTTGAGCTAGACAGGCTGGCCAAACTAGAGCGGGCT
GATTGGGATACGGTTTTGGCGCGGGAATTGCAGGCAAGATGCAACGTCGG
TAGCATTCACGCAGGCGGGAGGCGGGCTGGGGCTAAGGCTAAGGCTAAGC
CTAGTACCGAAGAGGGTCGTGTTTGGGGTAGTGTACGCGTAAAGGCGGCG
CGTTACTGTATGAATCCCGACTGCAGCAAGAGGTCTCAGAATGGGTGCAG
TTGCGCAGAGTGTACGGCAGGGGGTGCCCAGGGGACATTGATGTGCCGGG
CATGCTTCATGAACGCTGCTTCACACACGGCAGCGGCAGTAGCTCGGGTG
CAAGGCGGAAAGGGGACGCGCAGAAGAAAGGATATGGGGTGGATAAAGCA
CTCGGAGTAA
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