mRNA_P-littoralis_Contig1307.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1307.12.1
Unique NamemRNA_P-littoralis_Contig1307.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1307.12.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.820e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:    2 INDPSVLEAGFKTAREEIVLHYLCCIISHVE-VGVVQLLRGRAEKCHRHQARVPESK 169
            IN P VLE GFK   EE  LHYL CII+HVE VGVVQ +  RAE+     A VP  +
Sbjct:  119 INQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSER 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1307.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE9.820e-856.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1307contigP-littoralis_Contig1307:33709..34243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size203
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.650438-CDS-P-littoralis_Contig1307:33708..338061680789594.650438-CDS-P-littoralis_Contig1307:33708..33806Pylaiella littoralis U1_48CDSP-littoralis_Contig1307 33709..33806 +
1680789594.659341-CDS-P-littoralis_Contig1307:34139..342421680789594.659341-CDS-P-littoralis_Contig1307:34139..34242Pylaiella littoralis U1_48CDSP-littoralis_Contig1307 34140..34242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1307.12.1prot_P-littoralis_Contig1307.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1307 33709..34242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1307.12.1

>prot_P-littoralis_Contig1307.12.1 ID=prot_P-littoralis_Contig1307.12.1|Name=mRNA_P-littoralis_Contig1307.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
DKRPQCVGGRVQDSAGGDCIALPMLHHQSRGGGSCTTSSRKSRKMPSPSS
SSTRVKNIWLQILLDYL
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mRNA from alignment at P-littoralis_Contig1307:33709..34243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1307.12.1 ID=mRNA_P-littoralis_Contig1307.12.1|Name=mRNA_P-littoralis_Contig1307.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig1307:33709..34243+ (Pylaiella littoralis U1_48)
GATAAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGG
AGATTGTATTGCACTACCTATGCTGCATCATCAGTCACGTGGAGGTGGGT
TGATGCGGTGTTCAATAGGAAGTGAGGAAGACATACCAGACGAAATTTTC
CCAAGGATTACAATCTCCATTCCGCAGCCGTAGTTGATTAAGACATAAAC
TCCATCCTCCCTCGGTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGG
TACGCTGTCTTTCTGATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGC
GCTTAGTTTTGGAGACAACCATTCTGATTTTTCTCTTCTATAGCTTGGAC
TCGACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCT
CGAACCGCTCCCCGTCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCG
CGGAAGAGCAGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAA
AAATATCTGGTTGCAAATCCTACTCGATTACCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1307:33709..34243+

>mRNA_P-littoralis_Contig1307.12.1 ID=mRNA_P-littoralis_Contig1307.12.1|Name=mRNA_P-littoralis_Contig1307.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1307:33709..34243+ (Pylaiella littoralis U1_48)
GATAAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGG
AGATTGTATTGCACTACCTATGCTGCATCATCAGTCACGTGGAGGTGGGA
GTTGTACAACTTCTTCGCGGAAGAGCAGAAAAATGCCATCGCCATCAAGC
TCGAGTACCCGAGTCAAAAATATCTGGTTGCAAATCCTACTCGATTACCT
C
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