mRNA_P-littoralis_Contig1304.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1304.5.1
Unique NamemRNA_P-littoralis_Contig1304.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.550e-62
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.640e-56
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISIT+V + +QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
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BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.660e-56
Identity = 88/100 (88.00%), Postives = 91/100 (91.00%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNL 340
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDN    QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QH D LTKAIS+ESF LHRDFVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
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BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.380e-56
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVM 334
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKA S+ESF LHRDFV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 9.740e-56
Identity = 89/101 (88.12%), Postives = 94/101 (93.07%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGA QI HNPITNSNSK IDVRHHFIRELVERK+ISITHV +++QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.820e-55
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
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BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.120e-55
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHV + +QHADFLTKAIS+ES  LHRDFVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.210e-54
Identity = 88/97 (90.72%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFV 331
            DVLKEVLFLRQVWRFMLP  GMPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKAIS+ESF LHRDF 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.950e-54
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFM P A MPCIPVFEDNQGA QIAHNPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.870e-54
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGA QIA+NPITNSNSK IDVRHHFIRELVERK+ISITHVTSE+QHADFLTKAIS+ESF LHRDFVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1304.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE1.550e-6293.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.640e-5689.11Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE1.660e-5688.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE3.380e-5690.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE9.740e-5688.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.820e-5593.07Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JEF2_9PHAE2.120e-5589.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE1.210e-5490.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE1.950e-5491.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE2.870e-5490.10Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1304contigP-littoralis_Contig1304:23614..23959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size346
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue3.97e-14
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size261
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.6113904-CDS-P-littoralis_Contig1304:23613..238741680789594.6113904-CDS-P-littoralis_Contig1304:23613..23874Pylaiella littoralis U1_48CDSP-littoralis_Contig1304 23614..23874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.622173-UTR-P-littoralis_Contig1304:23874..239591680789594.622173-UTR-P-littoralis_Contig1304:23874..23959Pylaiella littoralis U1_48UTRP-littoralis_Contig1304 23875..23959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1304.5.1prot_P-littoralis_Contig1304.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1304 23614..23874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1304.5.1

>prot_P-littoralis_Contig1304.5.1 ID=prot_P-littoralis_Contig1304.5.1|Name=mRNA_P-littoralis_Contig1304.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGATQIAHNPITNSNSKPIDVRHHFIRELVERKQ
ISITHVTSEYQHADFLTKAISRESFELHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig1304:23614..23959-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1304.5.1 ID=mRNA_P-littoralis_Contig1304.5.1|Name=mRNA_P-littoralis_Contig1304.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig1304:23614..23959- (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTATGTTGCCAACAGCG
GGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGACTCAGAT
CGCCCACAATCCAATCACCAACTCGAACTCGAAGCCCATAGACGTACGGC
ATCACTTTATCAGGGAACTGGTAGAGAGGAAGCAGATTTCGATCACACAC
GTGACGTCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAG
GGAGTCTTTTGAACTGCACCGTGATTTTGTGATGAATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1304:23614..23959-

>mRNA_P-littoralis_Contig1304.5.1 ID=mRNA_P-littoralis_Contig1304.5.1|Name=mRNA_P-littoralis_Contig1304.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1304:23614..23959- (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGACTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
CCATAGACGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGCAG
ATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGAACTGCACCGTGATTTTGTGATGA
ATTTGCAGTGA
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