mRNA_P-littoralis_Contig1304.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1304.3.1
Unique NamemRNA_P-littoralis_Contig1304.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.220e-43
Identity = 76/178 (42.70%), Postives = 116/178 (65.17%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVS---FSSWVGL------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC+++RP  M    GF+ F+G LSP YV+ T+   T +K LD L + V+T+++  L+     C  +G+ G F G + DLT+  G E+ T TVS++ KG+T++ R+ L  +AFPGTHTA D+ PWI E++   F+ ++G       +++A TVDQGGN+VNA + +GVPV+ C  HR+N
Sbjct:  214 CCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVN 391          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.120e-40
Identity = 73/178 (41.01%), Postives = 107/178 (60.11%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVSFSSWVGL---------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC++ RP  M    GF+ FVG LSP YV  T+  +T  K+LD L   V   ++  L+     C  +G+GG F G + DLT+  G E+ T  VS++ KG+T++ R++L T+AFPG+HTA D+ PWI  ++   +  L         +++A TVDQG N+VNA   +GVPV+ C  HR+N
Sbjct:   25 CCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVN 202          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 9.490e-40
Identity = 72/178 (40.45%), Postives = 108/178 (60.67%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVSFSSWVGL---------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC+++RP  M    GF+ FVG LSP YV  T+  +T  K+LD L   ++  ++  L+     C  +G+GG F G + DLT+  G E+ T  VS++ KG+T++ R++L T+AFPG+HTA D+ PWI  ++      L         +++A TVDQG N+VNA   +GVPV+ C  HR+N
Sbjct:   25 CCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVN 202          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.920e-39
Identity = 74/178 (41.57%), Postives = 112/178 (62.92%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVS---FSSWVGL------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC+D+RP  +    GF+ F+G LSP YV  T+ KST  + LD L   V ++++ +L+        +G+ GPF G + DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI +++   FS ++G       +++A TVDQG N++NA   +GV V+ C  HRLN
Sbjct:   21 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLN 198          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.160e-39
Identity = 74/178 (41.57%), Postives = 112/178 (62.92%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVS---FSSWVGL------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC+D+RP  +    GF+ F+G LSP YV  T+ KST  + LD L   V ++++ +L+        +G+ GPF G + DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI +++   FS ++G       +++A TVDQG N++NA   +GV V+ C  HRLN
Sbjct:  216 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLN 393          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.490e-36
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTE-MERLTLTTKAFPGTHTASDVDPWIREVSFSSWVGLI---------YVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            CC+++RP  M    GF+ FVG LSP YV  T+  +T  K+LDAL   V+  ++  L+        +G+GG F G   DLT+    E+ T TVS++ KG T+ + R+ L T+AFPG+HTA D+ PWI  ++   +  LI         ++  TVDQG N+VNA+  +GVPV+ C  HR+N
Sbjct:   21 CCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVN 199          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.650e-33
Identity = 69/186 (37.10%), Postives = 108/186 (58.06%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVSFSSWVGL-----------------IYVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            C +++RP +M    G++  +G L P YV+ T+  +T   IL  +  +    + T L+ +  SC +LG+ GPF G + DLT+    E+ T +VS+I +  T + R+ L T+AFPG+HTA+D++PWI + SF+++  L                 +++A TVDQGGN+VNA   + V VL C  HRLN
Sbjct:  196 CAINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLN 381          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.410e-28
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    7 CVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            C+++RP  M    GF+ F+G LSP YV+ T+   T +K LD L   V T+++  L+     C  +G+ G F G + DLT+  G E+ T TVS++ KG+T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEEL 457          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.720e-28
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    4 CCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVRTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIRE 384
            CC+D+RP  +    GF+ F+G LSP YV  T+ KST  + LD L   V ++++ +L+        +G+ GPF G + DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI +
Sbjct: 1300 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426          
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.960e-11
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  148 RTNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQG--IEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREVS---FSSWVGLI-----YVAATVDQGGNMVNAFEGMGVPVLICTGHRLN 510
            +T+L+ +LK+     K++G+  P       L ST G  I++    +  +  G++    L+L TK F G HT + +  W+ +++   F S V  +     YVAATVDQG N+VNA + +G+P + C GHR++
Sbjct:    6 KTSLVAQLKEAYEELKKIGYHLP----RPVLLSTAGLDIDWHRRVLHSLGVGDSLPVHLSLATKVFRGQHTQATIKTWLEQLTTGVFQSIVPAVVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIH 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1304.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE6.220e-4342.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE5.120e-4041.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE9.490e-4040.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.920e-3941.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE4.160e-3941.57Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE3.490e-3640.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE3.650e-3337.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFJ9_9PHAE1.410e-2842.52Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KVP4_9PHAE2.720e-2842.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X8_ECTSI5.960e-1133.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1304contigP-littoralis_Contig1304:18892..19776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15707188
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size510
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.78e-07
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size510
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.5627344-CDS-P-littoralis_Contig1304:18891..193021680789594.5627344-CDS-P-littoralis_Contig1304:18891..19302Pylaiella littoralis U1_48CDSP-littoralis_Contig1304 18892..19302 +
1680789594.5742488-CDS-P-littoralis_Contig1304:19677..197761680789594.5742488-CDS-P-littoralis_Contig1304:19677..19776Pylaiella littoralis U1_48CDSP-littoralis_Contig1304 19678..19776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1304.3.1prot_P-littoralis_Contig1304.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1304 18892..19776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1304.3.1

>prot_P-littoralis_Contig1304.3.1 ID=prot_P-littoralis_Contig1304.3.1|Name=mRNA_P-littoralis_Contig1304.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMEKILDALAADVR
TNLITKLKDYNVSCKELGWGGPFFGVESDLTSTQGIEFCTLTVSFIPKGN
TEMERLTLTTKAFPGTHTASDVDPWIREVSFSSWVGLIYVAATVDQGGNM
VNAFEGMGVPVLICTGHRLN
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mRNA from alignment at P-littoralis_Contig1304:18892..19776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1304.3.1 ID=mRNA_P-littoralis_Contig1304.3.1|Name=mRNA_P-littoralis_Contig1304.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=885bp|location=Sequence derived from alignment at P-littoralis_Contig1304:18892..19776+ (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACGTGCGGCCGTTTTCCATGGCTGAGCGGGCCGGGTT CCAGTACTTCGTCGGCGGCTTGAGCCCGTCGTACGTACAGGAGACGATAC ACAAGAGCACGATGGAAAAGATTCTCGATGCCTTGGCCGCCGATGTTCGC ACCAACCTCATCACGAAGCTGAAGGACTACAATGTTTCCTGCAAGGAACT CGGGTGGGGCGGGCCATTCTTTGGCGTGGAGTCGGACCTGACCAGCACGC AAGGCATCGAGTTCTGTACTCTCACGGTCTCCTTCATTCCGAAGGGTAAC ACGGAGATGGAGCGACTGACGCTAACGACAAAGGCGTTCCCGGGTACGCA CACGGCAAGCGATGTGGACCCGTGGATCCGCGAGGTGAGTTTCTCTAGTT GGGTTGGTTTAGTTTATTGATTGTTTACTGCTGGTTGATTATATTTATTC ATTTGTTCCAGCTGATTTTTTCACGCTTGGCCGAACTTCTTGGGGCGACC ATAAAAGCTGCTGGATAGAAGGGATTGTCACATTATGAATTTGTTGGCAA TTCGTTGTATTATAGGATCGATTTGTTTGTGCCCAACGAAACCTCTTGCG TTCGTGGACACCAATTGCCGCGTTGAATGCTGTTCTCTACTGTTCCAAAT CGTGCCTTAATTTCTTATTTCTGAGCAACTCTGCCCCATGCCTGGCATTC GCTGACCGTGTTACTTTTGCTTTGAGCAGGTCACTACCGAGTACTTCGCG CCTATCGTAGGAGAGGCCAACGCCGACCCAGCGAAGATCTACGTTGCTGC CACGGTCGACCAAGGGGGCAACATGGTGAATGCGTTTGAGGGCATGGGCG TGCCCGTCCTGATCTGCACGGGACATCGGCTCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1304:18892..19776+

>mRNA_P-littoralis_Contig1304.3.1 ID=mRNA_P-littoralis_Contig1304.3.1|Name=mRNA_P-littoralis_Contig1304.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig1304:18892..19776+ (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACGTGCGGCCGTTTTCCATGGCTGAGCGGGCCGGGTT
CCAGTACTTCGTCGGCGGCTTGAGCCCGTCGTACGTACAGGAGACGATAC
ACAAGAGCACGATGGAAAAGATTCTCGATGCCTTGGCCGCCGATGTTCGC
ACCAACCTCATCACGAAGCTGAAGGACTACAATGTTTCCTGCAAGGAACT
CGGGTGGGGCGGGCCATTCTTTGGCGTGGAGTCGGACCTGACCAGCACGC
AAGGCATCGAGTTCTGTACTCTCACGGTCTCCTTCATTCCGAAGGGTAAC
ACGGAGATGGAGCGACTGACGCTAACGACAAAGGCGTTCCCGGGTACGCA
CACGGCAAGCGATGTGGACCCGTGGATCCGCGAGGTGAGTTTCTCTAGTT
GGGTTGGTTTAATCTACGTTGCTGCCACGGTCGACCAAGGGGGCAACATG
GTGAATGCGTTTGAGGGCATGGGCGTGCCCGTCCTGATCTGCACGGGACA
TCGGCTCAAC
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