mRNA_P-littoralis_Contig1304.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1304.1.1
Unique NamemRNA_P-littoralis_Contig1304.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1304.1.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.890e-26
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    1 LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 306
            +GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F
Sbjct:   94 MGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKF 194
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BLAST of mRNA_P-littoralis_Contig1304.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.460e-23
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTF 306
            +GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F
Sbjct:   17 IGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHF 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1304.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE1.890e-2658.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE8.460e-2347.06Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1304contigP-littoralis_Contig1304:4107..4413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size307
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.5278459-CDS-P-littoralis_Contig1304:4107..44131680789594.5278459-CDS-P-littoralis_Contig1304:4107..4413Pylaiella littoralis U1_48CDSP-littoralis_Contig1304 4108..4413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1304.1.1prot_P-littoralis_Contig1304.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1304 4108..4413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1304.1.1

>prot_P-littoralis_Contig1304.1.1 ID=prot_P-littoralis_Contig1304.1.1|Name=mRNA_P-littoralis_Contig1304.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVL
HCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKV
TF
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mRNA from alignment at P-littoralis_Contig1304:4107..4413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1304.1.1 ID=mRNA_P-littoralis_Contig1304.1.1|Name=mRNA_P-littoralis_Contig1304.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=307bp|location=Sequence derived from alignment at P-littoralis_Contig1304:4107..4413- (Pylaiella littoralis U1_48)
CTGGGAGACACGGGCGCGGTAATTCATGCCGTTTCCAACGATGAACACGT
CTATAATCGGCGTGCGCCGCGCCGCGGAGAGACGCTTCTCATGGTGGGTG
ACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTT
CATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTCCC
GAAATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAGAAGGCAAAGA
TACCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGACGGCAAGGTC
ACCTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1304:4107..4413-

>mRNA_P-littoralis_Contig1304.1.1 ID=mRNA_P-littoralis_Contig1304.1.1|Name=mRNA_P-littoralis_Contig1304.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig1304:4107..4413- (Pylaiella littoralis U1_48)
CTGGGAGACACGGGCGCGGTAATTCATGCCGTTTCCAACGATGAACACGT
CTATAATCGGCGTGCGCCGCGCCGCGGAGAGACGCTTCTCATGGTGGGTG
ACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTT
CATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTCCC
GAAATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAGAAGGCAAAGA
TACCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGACGGCAAGGTC
ACCTTC
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