mRNA_P-littoralis_Contig1303.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1303.1.1
Unique NamemRNA_P-littoralis_Contig1303.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1303.1.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.660e-20
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   40 LRERDLGQFEIKLTNVTFTEHCRQTNPRAVDNLVESIRNSGWMPTALPQVLVPGLGPDEALSTETASQLQVHVLDGNHRLKAAK 291
            L++ +LG +EI L N+ FTEHCRQ +P AV  +V SI   GWMPTA+PQV +P +   + ++ E A+ +  +VLDGNHRL AAK
Sbjct:   48 LKDLELGVWEIPLANIRFTEHCRQRSPAAVTAIVASITEMGWMPTAVPQVTLPEVQKGQVMTAELAATMTAYVLDGNHRLLAAK 131
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BLAST of mRNA_P-littoralis_Contig1303.1.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.460e-8
Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   22 KDFGEYLRERDLGQFEIKLTNVTFTEHCRQTNPRAVDNLVESIRNSGWMPTALPQVLVPG--LGPDEALSTETASQLQVHVLDGNHRLKAAK 291
            +D    L +  LG+F+++L N+T TE  R  +   + +L  SI+  GW+ +  P V++    LG    L+ E A     H LDGNHR+   K
Sbjct:    7 QDMSAVLSKHYLGEFKMRLCNITCTEMVRPLSQNGLQHLERSIQEVGWIESFAPSVVIQRDHLGDSRELTAEAALTAPAHTLDGNHRVTTLK 98
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BLAST of mRNA_P-littoralis_Contig1303.1.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.900e-8
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:   22 KDFGEYLRERDLGQFEIKLTNVTFTEHCRQTNPRAVDNLVESIRNSGWMPTALPQVLVPG--LGPDEALSTETASQLQVHVLDGNHRLKAAK 291
            +D    L +  LG+F ++L N+T TE  R  +   + +L  SI+  GW+ +  P V++    LG    L+ E A     H LDGNHR+   K
Sbjct:    7 QDMSAVLSKHYLGEFMMRLCNITCTEMVRPLSQNGLQHLERSIQEVGWIESFAPSVVIQRDHLGDSRELTAEAALTAPAHTLDGNHRVTTLK 98
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BLAST of mRNA_P-littoralis_Contig1303.1.1 vs. uniprot
Match: A0A6H5KMU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.510e-7
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:   22 KDFGEYLRERDLGQFEIKLTNVTFTEHCRQTNPRAVDNLVESIRNSGWMPTALPQVLV---PGLGPDEALSTETASQLQVHVLDGNHRLKAAK 291
            +D    L E  LG+F+++L N+T TE  R  +   + +L  SI+  GW+ +  P  +V     LG  +  + E A     H LD NHR+   K
Sbjct:    7 QDMSAVLSEHYLGEFKMRLGNITCTEMVRPLSQNGLKHLERSIQEVGWLESFAPSSVVIQQDRLGDSDEPAAEAALTTPAHTLDSNHRVATLK 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE2.660e-2051.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC60_9PHAE1.460e-833.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE3.900e-833.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMU9_9PHAE1.510e-732.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1303contigP-littoralis_Contig1303:1576..1869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.4270523-CDS-P-littoralis_Contig1303:1575..18691680789594.4270523-CDS-P-littoralis_Contig1303:1575..1869Pylaiella littoralis U1_48CDSP-littoralis_Contig1303 1576..1869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1303.1.1prot_P-littoralis_Contig1303.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1303 1576..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1303.1.1

>prot_P-littoralis_Contig1303.1.1 ID=prot_P-littoralis_Contig1303.1.1|Name=mRNA_P-littoralis_Contig1303.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
SDGAAAKKDFGEYLRERDLGQFEIKLTNVTFTEHCRQTNPRAVDNLVESI
RNSGWMPTALPQVLVPGLGPDEALSTETASQLQVHVLDGNHRLKAAKI
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mRNA from alignment at P-littoralis_Contig1303:1576..1869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1303.1.1 ID=mRNA_P-littoralis_Contig1303.1.1|Name=mRNA_P-littoralis_Contig1303.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1303:1576..1869+ (Pylaiella littoralis U1_48)
TCGGATGGGGCGGCTGCCAAGAAGGATTTCGGAGAGTACCTTCGTGAACG
CGACCTAGGACAGTTTGAGATTAAGCTAACGAACGTCACTTTCACCGAGC
ACTGCAGGCAAACCAACCCTCGGGCGGTCGATAACTTAGTGGAGTCGATT
CGCAACTCGGGCTGGATGCCTACGGCCCTCCCGCAGGTGTTGGTGCCTGG
CCTCGGGCCTGACGAGGCGTTGAGTACTGAGACAGCGTCGCAGCTTCAGG
TGCATGTCTTAGACGGAAACCATCGCCTCAAGGCGGCCAAGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1303:1576..1869+

>mRNA_P-littoralis_Contig1303.1.1 ID=mRNA_P-littoralis_Contig1303.1.1|Name=mRNA_P-littoralis_Contig1303.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1303:1576..1869+ (Pylaiella littoralis U1_48)
TCGGATGGGGCGGCTGCCAAGAAGGATTTCGGAGAGTACCTTCGTGAACG
CGACCTAGGACAGTTTGAGATTAAGCTAACGAACGTCACTTTCACCGAGC
ACTGCAGGCAAACCAACCCTCGGGCGGTCGATAACTTAGTGGAGTCGATT
CGCAACTCGGGCTGGATGCCTACGGCCCTCCCGCAGGTGTTGGTGCCTGG
CCTCGGGCCTGACGAGGCGTTGAGTACTGAGACAGCGTCGCAGCTTCAGG
TGCATGTCTTAGACGGAAACCATCGCCTCAAGGCGGCCAAGATA
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